FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5218, 190 aa 1>>>pF1KE5218 190 - 190 aa - 190 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3243+/-0.000798; mu= 12.4494+/- 0.048 mean_var=56.6610+/-11.711, 0's: 0 Z-trim(107.0): 16 B-trim: 67 in 1/49 Lambda= 0.170385 statistics sampled from 9291 (9293) to 9291 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.285), width: 16 Scan time: 1.350 The best scores are: opt bits E(32554) CCDS6789.1 SLC31A1 gene_id:1317|Hs108|chr9 ( 190) 1272 320.5 3.8e-88 >>CCDS6789.1 SLC31A1 gene_id:1317|Hs108|chr9 (190 aa) initn: 1272 init1: 1272 opt: 1272 Z-score: 1696.0 bits: 320.5 E(32554): 3.8e-88 Smith-Waterman score: 1272; 100.0% identity (100.0% similar) in 190 aa overlap (1-190:1-190) 10 20 30 40 50 60 pF1KE5 MDHSHHMGMSYMDSNSTMQPSHHHPTTSASHSHGGGDSSMMMMPMTFYFGFKNVELLFSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS67 MDHSHHMGMSYMDSNSTMQPSHHHPTTSASHSHGGGDSSMMMMPMTFYFGFKNVELLFSG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 LVINTAGEMAGAFVAVFLLAMFYEGLKIARESLLRKSQVSIRYNSMPVPGPNGTILMETH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS67 LVINTAGEMAGAFVAVFLLAMFYEGLKIARESLLRKSQVSIRYNSMPVPGPNGTILMETH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 KTVGQQMLSFPHLLQTVLHIIQVVISYFLMLIFMTYNGYLCIAVAAGAGTGYFLFSWKKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS67 KTVGQQMLSFPHLLQTVLHIIQVVISYFLMLIFMTYNGYLCIAVAAGAGTGYFLFSWKKA 130 140 150 160 170 180 190 pF1KE5 VVVDITEHCH :::::::::: CCDS67 VVVDITEHCH 190 190 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:36:40 2016 done: Mon Nov 7 22:36:41 2016 Total Scan time: 1.350 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]