FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6210, 250 aa 1>>>pF1KE6210 250 - 250 aa - 250 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7754+/-0.000341; mu= 11.9977+/- 0.021 mean_var=80.5371+/-16.637, 0's: 0 Z-trim(116.3): 91 B-trim: 595 in 1/57 Lambda= 0.142915 statistics sampled from 27196 (27312) to 27196 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.32), width: 16 Scan time: 6.910 The best scores are: opt bits E(85289) NP_002110 (OMIM: 142930) HLA class II histocompati ( 250) 1695 358.8 5.1e-99 NP_002113 (OMIM: 146880,212750) HLA class II histo ( 255) 955 206.3 4.4e-53 NP_061984 (OMIM: 142860) HLA class II histocompati ( 254) 943 203.8 2.4e-52 NP_291032 (OMIM: 142880) HLA class II histocompati ( 260) 940 203.2 3.8e-52 NP_001229454 (OMIM: 142880) HLA class II histocomp ( 260) 940 203.2 3.8e-52 NP_001229453 (OMIM: 142880) HLA class II histocomp ( 260) 940 203.2 3.8e-52 NP_064440 (OMIM: 613503) HLA class II histocompati ( 255) 932 201.5 1.2e-51 XP_006715142 (OMIM: 146880,212750) PREDICTED: HLA ( 206) 810 176.3 3.7e-44 NP_006111 (OMIM: 142855) HLA class II histocompati ( 261) 363 84.2 2.5e-16 NP_002112 (OMIM: 142858) HLA class II histocompati ( 258) 273 65.7 9.5e-11 XP_011512862 (OMIM: 615161) PREDICTED: HLA class I ( 256) 262 63.4 4.5e-10 NP_001287719 (OMIM: 615161) HLA class II histocomp ( 264) 262 63.4 4.7e-10 XP_005249108 (OMIM: 615161) PREDICTED: HLA class I ( 275) 262 63.4 4.8e-10 NP_001185787 (OMIM: 615161) HLA class II histocomp ( 227) 258 62.5 7.3e-10 NP_001230894 (OMIM: 126200,142857,180300,181000) m ( 266) 253 61.5 1.7e-09 XP_011512863 (OMIM: 615161) PREDICTED: HLA class I ( 219) 251 61.1 1.9e-09 NP_002116 (OMIM: 604776) major histocompatibility ( 266) 249 60.7 3e-09 XP_011512864 (OMIM: 604776) PREDICTED: major histo ( 276) 249 60.7 3.1e-09 NP_001230891 (OMIM: 123400,126200,212750,604305) H ( 261) 247 60.3 3.9e-09 NP_002114 (OMIM: 123400,126200,212750,604305) HLA ( 261) 244 59.7 6e-09 NP_002109 (OMIM: 142856) HLA class II histocompati ( 263) 244 59.7 6.1e-09 NP_001230890 (OMIM: 123400,126200,212750,604305) H ( 269) 244 59.7 6.2e-09 XP_011546040 (OMIM: 126200,142857,180300,181000) P ( 266) 242 59.3 8.2e-09 NP_002115 (OMIM: 126200,142857,180300,181000) majo ( 266) 233 57.4 3e-08 NP_072049 (OMIM: 612735) major histocompatibility ( 266) 232 57.2 3.4e-08 NP_002111 (OMIM: 600629) HLA class II histocompati ( 273) 208 52.3 1.1e-06 NP_620576 (OMIM: 104300,176100,176200,235200,61263 ( 260) 194 49.4 7.6e-06 NP_620578 (OMIM: 104300,176100,176200,235200,61263 ( 325) 194 49.4 9.2e-06 NP_001287678 (OMIM: 104300,176100,176200,235200,61 ( 337) 194 49.4 9.5e-06 NP_000401 (OMIM: 104300,176100,176200,235200,61263 ( 348) 194 49.4 9.7e-06 XP_011512845 (OMIM: 104300,176100,176200,235200,61 ( 348) 194 49.4 9.7e-06 NP_620573 (OMIM: 104300,176100,176200,235200,61263 ( 256) 190 48.5 1.3e-05 NP_620579 (OMIM: 104300,176100,176200,235200,61263 ( 168) 180 46.4 3.9e-05 XP_016866307 (OMIM: 142871,600807) PREDICTED: HLA ( 246) 181 46.7 4.7e-05 XP_016866306 (OMIM: 142871,600807) PREDICTED: HLA ( 246) 181 46.7 4.7e-05 NP_620577 (OMIM: 104300,176100,176200,235200,61263 ( 246) 181 46.7 4.7e-05 NP_620575 (OMIM: 104300,176100,176200,235200,61263 ( 334) 181 46.8 6e-05 NP_064455 (OMIM: 146770,613500) immunoglobulin lam ( 213) 178 46.0 6.4e-05 XP_011528471 (OMIM: 146770,613500) PREDICTED: immu ( 214) 178 46.0 6.4e-05 NP_620572 (OMIM: 104300,176100,176200,235200,61263 ( 242) 178 46.1 7.1e-05 XP_016866304 (OMIM: 143110) PREDICTED: HLA class I ( 228) 172 44.8 0.00016 NP_001316086 (OMIM: 603889) signal-regulatory prot ( 398) 174 45.4 0.00019 NP_001129316 (OMIM: 603889) signal-regulatory prot ( 398) 174 45.4 0.00019 XP_016866303 (OMIM: 143110) PREDICTED: HLA class I ( 324) 172 44.9 0.00021 XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343) 172 44.9 0.00022 NP_061823 (OMIM: 143110) HLA class I histocompatib ( 346) 172 44.9 0.00022 XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254) 170 44.4 0.00023 XP_016866302 (OMIM: 143110) PREDICTED: HLA class I ( 388) 172 44.9 0.00025 NP_001181928 (OMIM: 600764) major histocompatibili ( 296) 170 44.5 0.00026 XP_016866301 (OMIM: 143110) PREDICTED: HLA class I ( 420) 172 45.0 0.00026 >>NP_002110 (OMIM: 142930) HLA class II histocompatibili (250 aa) initn: 1695 init1: 1695 opt: 1695 Z-score: 1898.7 bits: 358.8 E(85289): 5.1e-99 Smith-Waterman score: 1695; 100.0% identity (100.0% similar) in 250 aa overlap (1-250:1-250) 10 20 30 40 50 60 pF1KE6 MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII 190 200 210 220 230 240 250 pF1KE6 MGTYVSSVPR :::::::::: NP_002 MGTYVSSVPR 250 >>NP_002113 (OMIM: 146880,212750) HLA class II histocomp (255 aa) initn: 962 init1: 940 opt: 955 Z-score: 1074.0 bits: 206.3 E(85289): 4.4e-53 Smith-Waterman score: 955; 56.6% identity (79.3% similar) in 242 aa overlap (1-242:1-242) 10 20 30 40 50 60 pF1KE6 MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV : : .:.:: .: :..:: . :::..: : .:: :: :::.::::: .. : : NP_002 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK ::...:..:: :::. :. :::::.: ..:. : .:.:...: : . : : :.:::. : NP_002 DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV : : ::::: :::.::::::::.::::: :::.:::::..::: :. :: : :. :: :. NP_002 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII :::...:::.::::::: :::.::: ..: : . ::.::::::..::.:..::::.:: NP_002 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFII 190 200 210 220 230 240 250 pF1KE6 MGTYVSSVPR .: NP_002 QGLRSVGASRHQGPL 250 >>NP_061984 (OMIM: 142860) HLA class II histocompatibili (254 aa) initn: 1000 init1: 887 opt: 943 Z-score: 1060.7 bits: 203.8 E(85289): 2.4e-52 Smith-Waterman score: 943; 54.7% identity (78.9% similar) in 247 aa overlap (1-247:1-246) 10 20 30 40 50 60 pF1KE6 MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV ::. . :::: . .:.: ::. : : .:. :: . ::.: .:: ...: : NP_061 MAISGVPVLGFFIIAVLMSAQESWAIKEEHV-IIQAEFYLNPDQSGEFMFDFDGDEIFHV 10 20 30 40 50 70 80 90 100 110 120 pF1KE6 DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK :. :.:.:::: ::: :: :. ::.::.::. ::.:.:...::: . ::::.:::: . NP_061 DMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTN 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE6 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV : ::: .::.:::..:.. :::.:.::::::. :: ::..: : . ::::::::::::. NP_061 SPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFL 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE6 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII ::.::::::.::::::: :::.:::...: : :.. :..::::::..::::...::..:: NP_061 PSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTIFII 180 190 200 210 220 230 250 pF1KE6 MGTYVSSVPR : :. NP_061 KGLRKSNAAERRGPL 240 250 >>NP_291032 (OMIM: 142880) HLA class II histocompatibili (260 aa) initn: 935 init1: 879 opt: 940 Z-score: 1057.2 bits: 203.2 E(85289): 3.8e-52 Smith-Waterman score: 940; 56.5% identity (79.0% similar) in 248 aa overlap (3-250:10-255) 10 20 30 40 50 pF1KE6 MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFD .:: ..: .: ::: . ::: ::::...:. :: :.. .:.: ::: NP_291 MRPEDRMFHIRA-VILRALSLAFLLSLRGAGAIKADHVSTYA-AFVQTHRPTGEFMFEFD 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 EEQLFSVDLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPP :...: ::: :.:.::.: :::. :. :::::.:: .. .:. :..:::...: : :: NP_291 EDEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPP 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 RVTVLPKSRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRK .:::.:: ::::::: ::: .:..::::.:.::: ::. ::::::.. : . :. :.: NP_291 EVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHK 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE6 FHYLPFVPSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFL :::: ::::::: :::.::::::: :::.::: : :: :.. ::..:::::..::::.. NP_291 FHYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGII 180 190 200 210 220 230 240 250 pF1KE6 VGTVLIIMGTYVSSVPR ::::::: . . :: NP_291 VGTVLIIKSLRSGHDPRAQGTL 240 250 260 >>NP_001229454 (OMIM: 142880) HLA class II histocompatib (260 aa) initn: 935 init1: 879 opt: 940 Z-score: 1057.2 bits: 203.2 E(85289): 3.8e-52 Smith-Waterman score: 940; 56.5% identity (79.0% similar) in 248 aa overlap (3-250:10-255) 10 20 30 40 50 pF1KE6 MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFD .:: ..: .: ::: . ::: ::::...:. :: :.. .:.: ::: NP_001 MRPEDRMFHIRA-VILRALSLAFLLSLRGAGAIKADHVSTYA-AFVQTHRPTGEFMFEFD 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 EEQLFSVDLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPP :...: ::: :.:.::.: :::. :. :::::.:: .. .:. :..:::...: : :: NP_001 EDEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPP 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 RVTVLPKSRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRK .:::.:: ::::::: ::: .:..::::.:.::: ::. ::::::.. : . :. :.: NP_001 EVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHK 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE6 FHYLPFVPSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFL :::: ::::::: :::.::::::: :::.::: : :: :.. ::..:::::..::::.. NP_001 FHYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGII 180 190 200 210 220 230 240 250 pF1KE6 VGTVLIIMGTYVSSVPR ::::::: . . :: NP_001 VGTVLIIKSLRSGHDPRAQGTL 240 250 260 >>NP_001229453 (OMIM: 142880) HLA class II histocompatib (260 aa) initn: 935 init1: 879 opt: 940 Z-score: 1057.2 bits: 203.2 E(85289): 3.8e-52 Smith-Waterman score: 940; 56.5% identity (79.0% similar) in 248 aa overlap (3-250:10-255) 10 20 30 40 50 pF1KE6 MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFD .:: ..: .: ::: . ::: ::::...:. :: :.. .:.: ::: NP_001 MRPEDRMFHIRA-VILRALSLAFLLSLRGAGAIKADHVSTYA-AFVQTHRPTGEFMFEFD 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 EEQLFSVDLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPP :...: ::: :.:.::.: :::. :. :::::.:: .. .:. :..:::...: : :: NP_001 EDEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPP 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 RVTVLPKSRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRK .:::.:: ::::::: ::: .:..::::.:.::: ::. ::::::.. : . :. :.: NP_001 EVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHK 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE6 FHYLPFVPSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFL :::: ::::::: :::.::::::: :::.::: : :: :.. ::..:::::..::::.. NP_001 FHYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGII 180 190 200 210 220 230 240 250 pF1KE6 VGTVLIIMGTYVSSVPR ::::::: . . :: NP_001 VGTVLIIKSLRSGHDPRAQGTL 240 250 260 >>NP_064440 (OMIM: 613503) HLA class II histocompatibili (255 aa) initn: 940 init1: 917 opt: 932 Z-score: 1048.4 bits: 201.5 E(85289): 1.2e-51 Smith-Waterman score: 932; 55.8% identity (78.9% similar) in 242 aa overlap (1-242:1-242) 10 20 30 40 50 60 pF1KE6 MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV : : .:.:: .: ...:: . :::..::: ::::.: :::.::::: .. : : NP_064 MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK ::. .:.::.:: :. : ::::..: ..:. : :......:: . : : :.:::. : NP_064 DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV : ::::: :::.::::::::.::::: ::..:::::..::: :. :: : :. :: :. NP_064 FPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII :::...:::.::::::: :::.::: ..: : . :::::::::..::.:..::::.:: NP_064 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFII 190 200 210 220 230 240 250 pF1KE6 MGTYVSSVPR .: NP_064 QGLRSVGASRHQGLL 250 >>XP_006715142 (OMIM: 146880,212750) PREDICTED: HLA clas (206 aa) initn: 810 init1: 810 opt: 810 Z-score: 913.8 bits: 176.3 E(85289): 3.7e-44 Smith-Waterman score: 810; 56.9% identity (78.4% similar) in 204 aa overlap (1-204:1-204) 10 20 30 40 50 60 pF1KE6 MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV : : .:.:: .: :..:: . :::..: : .:: :: :::.::::: .. : : XP_006 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK ::...:..:: :::. :. :::::.: ..:. : .:.:...: : . : : :.:::. : XP_006 DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV : : ::::: :::.::::::::.::::: :::.:::::..::: :. :: : :. :: :. XP_006 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII :::...:::.::::::: :::.:: XP_006 PSADEIYDCKVEHWGLDQPLLKHWVE 190 200 >>NP_006111 (OMIM: 142855) HLA class II histocompatibili (261 aa) initn: 262 init1: 102 opt: 363 Z-score: 414.2 bits: 84.2 E(85289): 2.5e-16 Smith-Waterman score: 363; 32.2% identity (63.0% similar) in 211 aa overlap (38-240:49-252) 10 20 30 40 50 60 pF1KE6 VLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSVDLKKSEA . :. . : ... .::.::: :.... NP_006 WLLPHSWAVPEAPTPMWPDDLQNHTFLHTVYCQDGSPSVGLSEAYDEDQLFFFDFSQNTR 20 30 40 50 60 70 70 80 90 100 110 120 pF1KE6 VWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVP-----PRVTVLPKSR : :::::.:.:. :: .: : . .... . . ..: : . :. . NP_006 VPRLPEFADWAQ--EQGDAPAILFDKEFCEWMIQQIGPKLDGKIPVSRGFPIAEVFTLKP 80 90 100 110 120 130 130 140 150 160 170 180 pF1KE6 VELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHL-FRKFHYLPFVP .:.:.:: :.:.:.:.:::.....: ... : :: . : : : : : :. : :: :.: NP_006 LEFGKPNTLVCFVSNLFPPMLTVNWQHHSVPV-EGFGPT-FVSAVDGLSFQAFSYLNFTP 140 150 160 170 180 190 190 200 210 220 230 pF1KE6 SAEDVYDCQVEHWGLDAPLLRHWELQVP--IPPPDAMETLVCALGLAIGLVGFLVGTVLI :...: : : . .: :: : : .:...:......:..:..:: ::: NP_006 EPSDIFSCIVTHEIDRYTAIAYW---VPRNALPSDLLENVLCGVAFGLGVLGIIVGIVLI 200 210 220 230 240 250 240 250 pF1KE6 IMGTYVSSVPR : NP_006 IYFRKPCSGD 260 >>NP_002112 (OMIM: 142858) HLA class II histocompatibili (258 aa) initn: 323 init1: 253 opt: 273 Z-score: 314.0 bits: 65.7 E(85289): 9.5e-11 Smith-Waterman score: 273; 35.9% identity (64.1% similar) in 128 aa overlap (111-238:122-246) 90 100 110 120 130 140 pF1KE6 DPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPKSRVELGQPNILICIVDNIFP : :::.: :... : . :.:.: : ...: NP_002 KDILEEKRAVPDRMCRHNYELGGPMTLQRRVQPRVNVSPSKKGPLQHHNLLVCHVTDFYP 100 110 120 130 140 150 150 160 170 180 190 200 pF1KE6 PVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFVPSAEDVYDCQVEHWGLDAPL :.. :. ::: : ::..:.. . : :. . .: ..:. ::: ::::: .::.:. NP_002 GSIQVRWFLNGQEETAGVVSTNLIRNGDWTFQILVMLEMTPQQGDVYTCQVEHTSLDSPV 160 170 180 190 200 210 210 220 230 240 250 pF1KE6 LRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLIIMGTYVSSVPR .:. : .::. : :...::. :: . NP_002 TVEWKAQ---SDSARSKTLTGAGGFVLGLIICGVGIFMHRRSKKVQRGSA 220 230 240 250 250 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:06:58 2016 done: Tue Nov 8 11:06:59 2016 Total Scan time: 6.910 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]