FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1409, 468 aa 1>>>pF1KE1409 468 - 468 aa - 468 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.7169+/-0.000835; mu= 13.6354+/- 0.050 mean_var=148.6885+/-28.652, 0's: 0 Z-trim(113.0): 25 B-trim: 0 in 0/51 Lambda= 0.105181 statistics sampled from 13683 (13706) to 13683 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.421), width: 16 Scan time: 3.370 The best scores are: opt bits E(32554) CCDS6039.1 TNFRSF10A gene_id:8797|Hs108|chr8 ( 468) 3235 502.4 4.2e-142 CCDS6036.1 TNFRSF10B gene_id:8795|Hs108|chr8 ( 411) 1333 213.7 2.9e-55 CCDS6035.1 TNFRSF10B gene_id:8795|Hs108|chr8 ( 440) 713 119.7 6.4e-27 CCDS6037.1 TNFRSF10C gene_id:8794|Hs108|chr8 ( 259) 644 109.0 6.3e-24 CCDS6038.1 TNFRSF10D gene_id:8793|Hs108|chr8 ( 386) 632 107.3 2.9e-23 >>CCDS6039.1 TNFRSF10A gene_id:8797|Hs108|chr8 (468 aa) initn: 3235 init1: 3235 opt: 3235 Z-score: 2664.7 bits: 502.4 E(32554): 4.2e-142 Smith-Waterman score: 3235; 99.8% identity (100.0% similar) in 468 aa overlap (1-468:1-468) 10 20 30 40 50 60 pF1KE1 MAPPPARVHLGAFLAVTPNPGSAASGTEAAAATPSKVWGSSAGRIEPRGGGRGALPTSMG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 MAPPPARVHLGAFLAVTPNPGSAASGTEAAAATPSKVWGSSAGRIEPRGGGRGALPTSMG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 QHGPSARARAGRAPGPRPAREASPRLRVHKTFKFVVVGVLLQVVPSSAATIKLHDQSIGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 QHGPSARARAGRAPGPRPAREASPRLRVHKTFKFVVVGVLLQVVPSSAATIKLHDQSIGT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 QQWEHSPLGELCPPGSHRSEHPGACNRCTEGVGYTNASNNLFACLPCTACKSDEEERSPC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 QQWEHSPLGELCPPGSHRSEHPGACNRCTEGVGYTNASNNLFACLPCTACKSDEEERSPC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 TTTRNTACQCKPGTFRNDNSAEMCRKCSRGCPRGMVKVKDCTPWSDIECVHKESGNGHNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 TTTRNTACQCKPGTFRNDNSAEMCRKCSRGCPRGMVKVKDCTPWSDIECVHKESGNGHNI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 WVILVVTLVVPLLLVAVLIVCCCIGSGCGGDPKCMDRVCFWRLGLLRGPGAEDNAHNEIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 WVILVVTLVVPLLLVAVLIVCCCIGSGCGGDPKCMDRVCFWRLGLLRGPGAEDNAHNEIL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 SNADSLSTFVSEQQMESQEPADLTGVTVQSPGEAQCLLGPAEAEGSQRRRLLVPANGADP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 SNADSLSTFVSEQQMESQEPADLTGVTVQSPGEAQCLLGPAEAEGSQRRRLLVPANGADP 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 TETLMLFFDKFANIVPFDSWDQLMRQLDLTKNEIDVVRAGTAGPGDALYAMLMKWVNKTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 TETLMLFFDKFANIVPFDSWDQLMRQLDLTKNEIDVVRAGTAGPGDALYAMLMKWVNKTG 370 380 390 400 410 420 430 440 450 460 pF1KE1 RNASIHTLLDALERMEERHAKEKIQDLLVDSGKFIYLEDGTGSAVSLE ::::::::::::::::::::.::::::::::::::::::::::::::: CCDS60 RNASIHTLLDALERMEERHAREKIQDLLVDSGKFIYLEDGTGSAVSLE 430 440 450 460 >>CCDS6036.1 TNFRSF10B gene_id:8795|Hs108|chr8 (411 aa) initn: 1334 init1: 648 opt: 1333 Z-score: 1105.6 bits: 213.7 E(32554): 2.9e-55 Smith-Waterman score: 1374; 56.1% identity (71.5% similar) in 417 aa overlap (60-466:5-411) 30 40 50 60 70 80 pF1KE1 AAATPSKVWGSSAGRIEPRGGGRGALPTSMGQHGPSAR-ARAGRAPGPRPAREASPRLRV ::..:.: :: ..:::: :: : : :: CCDS60 MEQRGQNAPAASGARKRHGPGPREARGARPGPRV 10 20 30 90 100 110 120 130 140 pF1KE1 HKTFKFVVVGVLLQVVPSSAATIKLHD----QSIGTQQWEHSPLGELCPPGSHRSEHPGA ::. .::..::: .: . .: : .: : . :: . :: ::::: : :: CCDS60 PKTLVLVVAAVLL-LVSAESALITQQDLAPQQRAAPQQKRSSPSEGLCPPGHHISEDGRD 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE1 CNRCTEGVGYTNASNNLFACLPCTACKSDEEERSPCTTTRNTACQCKPGTFRNDNSAEMC : : : :.. :.:. :: :: : : : : :::::::::.:::. ::::...: ::: CCDS60 CISCKYGQDYSTHWNDLLFCLRCTRCDSGEVELSPCTTTRNTVCQCEEGTFREEDSPEMC 100 110 120 130 140 150 210 220 230 240 250 pF1KE1 RKCSRGCPRGMVKVKDCTPWSDIECVHKESGN--GHNIW-VILVVTLVV--PLLLVAVLI ::: ::::::::: :::::::::::::::: : .. :.:.:.. : :: :: CCDS60 RKCRTGCPRGMVKVGDCTPWSDIECVHKESGIIIGVTVAAVVLIVAVFVCKSLLWKKVLP 160 170 180 190 200 210 260 270 280 290 300 310 pF1KE1 VCCCIGSGCGGDPKCMDRVCFWRLGLLRGPGAEDNAHNEILSNADSLSTFVSEQQMESQE : :: ::::. .:: . ::::::. :::.: . : : ::.:: :: CCDS60 YLKGICSGGGGDPERVDRSS-------QRPGAEDNVLNEIVSILQ--PTQVPEQEMEVQE 220 230 240 250 260 320 330 340 350 360 370 pF1KE1 PADLTGVTVQSPGEAQCLLGPAEAEGSQRRRLLVPANGADPTETLMLFFDKFANIVPFDS ::. :::.. ::::.. :: ::::: ::::::::::: .:::::: :: ::..::::: CCDS60 PAEPTGVNMLSPGESEHLLEPAEAERSQRRRLLVPANEGDPTETLRQCFDDFADLVPFDS 270 280 290 300 310 320 380 390 400 410 420 430 pF1KE1 WDQLMRQLDLTKNEIDVVRAGTAGPGDALYAMLMKWVNKTGRNASIHTLLDALERMEERH :. :::.: : ::: :..: .:: :.::.::.::::::::.::.:::::::: . :: CCDS60 WEPLMRKLGLMDNEIKVAKAEAAGHRDTLYTMLIKWVNKTGRDASVHTLLDALETLGERL 330 340 350 360 370 380 440 450 460 pF1KE1 AKEKIQDLLVDSGKFIYLEDGTGSAVSLE ::.::.: :..::::.::: .. ::.: CCDS60 AKQKIEDHLLSSGKFMYLEGNADSAMS 390 400 410 >>CCDS6035.1 TNFRSF10B gene_id:8795|Hs108|chr8 (440 aa) initn: 1381 init1: 648 opt: 713 Z-score: 596.8 bits: 119.7 E(32554): 6.4e-27 Smith-Waterman score: 1338; 52.0% identity (67.9% similar) in 446 aa overlap (60-466:5-440) 30 40 50 60 70 80 pF1KE1 AAATPSKVWGSSAGRIEPRGGGRGALPTSMGQHGPSAR-ARAGRAPGPRPAREASPRLRV ::..:.: :: ..:::: :: : : :: CCDS60 MEQRGQNAPAASGARKRHGPGPREARGARPGPRV 10 20 30 90 100 110 120 130 140 pF1KE1 HKTFKFVVVGVLLQVVPSSAATIKLHD----QSIGTQQWEHSPLGELCPPGSHRSEHPGA ::. .::..::: .: . .: : .: : . :: . :: ::::: : :: CCDS60 PKTLVLVVAAVLL-LVSAESALITQQDLAPQQRAAPQQKRSSPSEGLCPPGHHISEDGRD 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE1 CNRCTEGVGYTNASNNLFACLPCTACKSDEEERSPCTTTRNTACQCKPGTFRNDNSAEMC : : : :.. :.:. :: :: : : : : :::::::::.:::. ::::...: ::: CCDS60 CISCKYGQDYSTHWNDLLFCLRCTRCDSGEVELSPCTTTRNTVCQCEEGTFREEDSPEMC 100 110 120 130 140 150 210 220 230 240 pF1KE1 RKCSRGCPRGMVKVKDCTPWSDIECVHKESGNGHNIWV---------------------- ::: ::::::::: ::::::::::::::::. :. : CCDS60 RKCRTGCPRGMVKVGDCTPWSDIECVHKESGTKHSGEVPAVEETVTSSPGTPASPCSLSG 160 170 180 190 200 210 250 260 270 280 290 pF1KE1 ILVVTLVVPLLLVAVLIVCCC------------IGSGCGGDPKCMDRVCFWRLGLLRGPG :.. . :. ..:.....:: : :: ::::. .:: . :: CCDS60 IIIGVTVAAVVLIVAVFVCKSLLWKKVLPYLKGICSGGGGDPERVDRSS-------QRPG 220 230 240 250 260 300 310 320 330 340 350 pF1KE1 AEDNAHNEILSNADSLSTFVSEQQMESQEPADLTGVTVQSPGEAQCLLGPAEAEGSQRRR ::::. :::.: . : : ::.:: ::::. :::.. ::::.. :: ::::: ::::: CCDS60 AEDNVLNEIVSILQ--PTQVPEQEMEVQEPAEPTGVNMLSPGESEHLLEPAEAERSQRRR 270 280 290 300 310 320 360 370 380 390 400 410 pF1KE1 LLVPANGADPTETLMLFFDKFANIVPFDSWDQLMRQLDLTKNEIDVVRAGTAGPGDALYA :::::: .:::::: :: ::..::::::. :::.: : ::: :..: .:: :.::. CCDS60 LLVPANEGDPTETLRQCFDDFADLVPFDSWEPLMRKLGLMDNEIKVAKAEAAGHRDTLYT 330 340 350 360 370 380 420 430 440 450 460 pF1KE1 MLMKWVNKTGRNASIHTLLDALERMEERHAKEKIQDLLVDSGKFIYLEDGTGSAVSLE ::.::::::::.::.:::::::: . :: ::.::.: :..::::.::: .. ::.: CCDS60 MLIKWVNKTGRDASVHTLLDALETLGERLAKQKIEDHLLSSGKFMYLEGNADSAMS 390 400 410 420 430 440 >>CCDS6037.1 TNFRSF10C gene_id:8794|Hs108|chr8 (259 aa) initn: 616 init1: 490 opt: 644 Z-score: 543.1 bits: 109.0 E(32554): 6.3e-24 Smith-Waterman score: 644; 60.0% identity (80.0% similar) in 155 aa overlap (87-236:3-156) 60 70 80 90 100 110 pF1KE1 TSMGQHGPSARARAGRAPGPRPAREASPRLRVHKTFKFVVV--GVLLQVVPSSAATIKLH :. ::.::::: .::: :. ::.: . . CCDS60 MARIPKTLKFVVVIVAVLLPVLAYSATTARQE 10 20 30 120 130 140 150 160 170 pF1KE1 D---QSIGTQQWEHSPLGELCPPGSHRSEHPGACNRCTEGVGYTNASNNLFACLPCTACK . :... :: .:: :: :: ::::::: :::: ::::: ::::::: .:.:::.:: CCDS60 EVPQQTVAPQQQRHSFKGEECPAGSHRSEHTGACNPCTEGVDYTNASNNEPSCFPCTVCK 40 50 60 70 80 90 180 190 200 210 220 230 pF1KE1 SDEEERSPCTTTRNTACQCKPGTFRNDNSAEMCRKCSRGCPRGMVKVKDCTPWSDIECVH ::....: :: ::.:.:::: :::::.:: :::::::: :: : :.:..:: :.::.::. CCDS60 SDQKHKSSCTMTRDTVCQCKEGTFRNENSPEMCRKCSR-CPSGEVQVSNCTSWDDIQCVE 100 110 120 130 140 150 240 250 260 270 280 290 pF1KE1 KESGNGHNIWVILVVTLVVPLLLVAVLIVCCCIGSGCGGDPKCMDRVCFWRLGLLRGPGA . ..: CCDS60 EFGANATVETPAAEETMNTSPGTPAPAAEETMNTSPGTPAPAAEETMTTSPGTPAPAAEE 160 170 180 190 200 210 >>CCDS6038.1 TNFRSF10D gene_id:8793|Hs108|chr8 (386 aa) initn: 1038 init1: 517 opt: 632 Z-score: 531.1 bits: 107.3 E(32554): 2.9e-23 Smith-Waterman score: 913; 44.2% identity (57.6% similar) in 443 aa overlap (60-466:5-384) 30 40 50 60 70 80 pF1KE1 AAATPSKVWGSSAGRIEPRGGGRGALPTSMGQHGPSAR-ARAGRAPGPRPAREASPRLRV :: :.: ::::: :: : : . : : CCDS60 MGLWGQSVPTASSARAGRYPGARTASGTRPWLLD 10 20 30 90 100 110 120 130 140 pF1KE1 HKTFKFVV--VGVLLQVVPSSAATIKLHD----QSIGTQQWEHSPLGELCPPGSHRSEHP : .:::: :.::: : .:: :: .: :... :: ..: : :: ::::::. CCDS60 PKILKFVVFIVAVLLPVRVDSA-TIPRQDEVPQQTVAPQQQRRSLKEEECPAGSHRSEYT 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE1 GACNRCTEGVGYTNASNNLFACLPCTACKSDEEERSPCTTTRNTACQCKPGTFRNDNSAE :::: ::::: :: ::::: .:: ::.::: . ..: :::::.:.:::. :.:.. :: : CCDS60 GACNPCTEGVDYTIASNNLPSCLLCTVCKSGQTNKSSCTTTRDTVCQCEKGSFQDKNSPE 100 110 120 130 140 150 210 220 230 240 pF1KE1 MCRKCSRGCPRGMVKVKDCTPWSDIECVHKE--SGNGHNI------------------WV ::: : :::::::::..::: :::.: .. :..:.. .. CCDS60 MCRTCRTGCPRGMVKVSNCTPRSDIKCKNESAASSTGKTPAAEETVTTILGMLASPYHYL 160 170 180 190 200 210 250 260 270 280 290 pF1KE1 ILVVTLVVPLLLVAVLIVC--------CCIGSGCGGDPKCMDRVCFWRLGL-LRGPGAED :..:.::. : .:.: . : : :: :: :. . :: : : . : ::::: CCDS60 IIIVVLVIILAVVVVGFSCRKKFISYLKGICSGGGGGPERVHRVLFRRRSCPSRVPGAED 220 230 240 250 260 270 300 310 320 330 340 350 pF1KE1 NAHNEILSNADSLSTFVSEQQMESQEPADLTGVTVQSPGEAQCLLGPAEAEGSQRRRLLV ::.:: ::: : ::::....:: :.::::::. : : : :: ::::: ::::::: CCDS60 NARNETLSNRYLQPTQVSEQEIQGQELAELTGVTVELPEEPQRLLEQAEAEGCQRRRLLV 280 290 300 310 320 330 360 370 380 390 400 410 pF1KE1 PANGADPTETLMLFFDKFANIVPFDSWDQLMRQLDLTKNEIDVVRAGTAGPGDALYAMLM :.: :: CCDS60 PVNDAD------------------------------------------------------ 420 430 440 450 460 pF1KE1 KWVNKTGRNASIHTLLDALERMEERHAKEKIQDLLVDSGKFIYLEDGTGSAVSLE .:.: ::::: .:: :::: ::: :: : :..: :: .:::.: CCDS60 --------SADISTLLDASATLEEGHAKETIQDQLVGSEKLFYEEDEAGSATSCL 340 350 360 370 380 468 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:39:11 2016 done: Mon Nov 7 01:39:12 2016 Total Scan time: 3.370 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]