FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3667, 165 aa 1>>>pF1KE3667 165 - 165 aa - 165 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6320+/-0.000371; mu= 10.6285+/- 0.023 mean_var=73.9672+/-14.921, 0's: 0 Z-trim(113.6): 71 B-trim: 171 in 1/52 Lambda= 0.149126 statistics sampled from 22980 (23051) to 22980 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.27), width: 16 Scan time: 5.620 The best scores are: opt bits E(85289) NP_006389 (OMIM: 606050) ubiquitin D [Homo sapiens ( 165) 1082 241.8 3.9e-64 NP_066289 (OMIM: 191340) polyubiquitin-C [Homo sap ( 685) 278 69.1 1.5e-11 NP_001307950 (OMIM: 191321) ubiquitin-60S ribosoma ( 135) 163 44.0 0.00011 XP_016882687 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 203) 163 44.1 0.00015 NP_001307947 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 154 42.1 0.00039 NP_003324 (OMIM: 191321) ubiquitin-60S ribosomal p ( 128) 154 42.1 0.00039 NP_001029102 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 154 42.1 0.00039 NP_001307946 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 154 42.1 0.00039 NP_001307949 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 154 42.1 0.00039 NP_001307948 (OMIM: 191321) ubiquitin-60S ribosoma ( 128) 154 42.1 0.00039 XP_005260109 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 156) 154 42.1 0.00047 XP_005260110 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 156) 154 42.1 0.00047 NP_002945 (OMIM: 191343) ubiquitin-40S ribosomal p ( 156) 154 42.1 0.00047 XP_005260111 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 156) 154 42.1 0.00047 XP_006722934 (OMIM: 191321) PREDICTED: ubiquitin-6 ( 156) 154 42.1 0.00047 NP_001129064 (OMIM: 191343) ubiquitin-40S ribosoma ( 156) 154 42.1 0.00047 NP_001170884 (OMIM: 191343) ubiquitin-40S ribosoma ( 156) 154 42.1 0.00047 NP_001268645 (OMIM: 119540,191339) polyubiquitin-B ( 229) 154 42.2 0.00064 NP_001268647 (OMIM: 119540,191339) polyubiquitin-B ( 229) 154 42.2 0.00064 NP_061828 (OMIM: 119540,191339) polyubiquitin-B pr ( 229) 154 42.2 0.00064 NP_001268648 (OMIM: 119540,191339) polyubiquitin-B ( 229) 154 42.2 0.00064 NP_001268646 (OMIM: 119540,191339) polyubiquitin-B ( 229) 154 42.2 0.00064 NP_001268649 (OMIM: 119540,191339) polyubiquitin-B ( 229) 154 42.2 0.00064 NP_001248754 (OMIM: 603281) 2'-5'-oligoadenylate s ( 384) 154 42.3 0.00099 NP_005092 (OMIM: 147571,616126) ubiquitin-like pro ( 165) 149 41.0 0.001 NP_003724 (OMIM: 603281) 2'-5'-oligoadenylate synt ( 514) 154 42.4 0.0013 >>NP_006389 (OMIM: 606050) ubiquitin D [Homo sapiens] (165 aa) initn: 1082 init1: 1082 opt: 1082 Z-score: 1272.5 bits: 241.8 E(85289): 3.9e-64 Smith-Waterman score: 1082; 100.0% identity (100.0% similar) in 165 aa overlap (1-165:1-165) 10 20 30 40 50 60 pF1KE3 MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 RSLSSYGIDKEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 RSLSSYGIDKEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIE 70 80 90 100 110 120 130 140 150 160 pF1KE3 TKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG ::::::::::::::::::::::::::::::::::::::::::::: NP_006 TKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 130 140 150 160 >>NP_066289 (OMIM: 191340) polyubiquitin-C [Homo sapiens (685 aa) initn: 154 init1: 154 opt: 278 Z-score: 328.3 bits: 69.1 E(85289): 1.5e-11 Smith-Waterman score: 278; 32.5% identity (68.2% similar) in 157 aa overlap (10-165:383-532) 10 20 30 pF1KE3 MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRS . :.. .:....: :.....: .... NP_066 QLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQD 360 370 380 390 400 410 40 50 60 70 80 90 pF1KE3 KTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLKVVKPSDEELPLFL-VESGDE : .: ..: :....: :. :.::.:.:.::.:.::.:.. . .:. . .: NP_066 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG----MQIFVKTLTG-- 420 430 440 450 460 100 110 120 130 140 150 pF1KE3 AKRHLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFL : :.:. :... .::: :. : :: :. : . ::.::::. ..::.:.: . : : NP_066 -KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 470 480 490 500 510 520 160 pF1KE3 ACYCIGG . :: NP_066 VLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 530 540 550 560 570 580 >-- initn: 154 init1: 154 opt: 278 Z-score: 328.3 bits: 69.1 E(85289): 1.5e-11 Smith-Waterman score: 278; 32.5% identity (68.2% similar) in 157 aa overlap (10-165:231-380) 10 20 30 pF1KE3 MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRS . :.. .:....: :.....: .... NP_066 QLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQD 210 220 230 240 250 260 40 50 60 70 80 90 pF1KE3 KTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLKVVKPSDEELPLFL-VESGDE : .: ..: :....: :. :.::.:.:.::.:.::.:.. . .:. . .: NP_066 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG----MQIFVKTLTG-- 270 280 290 300 310 100 110 120 130 140 150 pF1KE3 AKRHLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFL : :.:. :... .::: :. : :: :. : . ::.::::. ..::.:.: . : : NP_066 -KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 320 330 340 350 360 370 160 pF1KE3 ACYCIGG . :: NP_066 VLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 380 390 400 410 420 430 >>NP_001307950 (OMIM: 191321) ubiquitin-60S ribosomal pr (135 aa) initn: 154 init1: 154 opt: 163 Z-score: 205.2 bits: 44.0 E(85289): 0.00011 Smith-Waterman score: 178; 29.3% identity (73.9% similar) in 92 aa overlap (1-88:1-92) 10 20 30 40 50 60 pF1KE3 MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPR : :. . . . :.. .:....: :.....: ....: .: ..: :....: :. NP_001 MMPKDANMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 RSLSSYGIDKEKTIHLTLK----VVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVK :.::.:.:.::.:.::.:. ...:: ..: NP_001 RTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKK 70 80 90 100 110 120 120 130 140 150 160 pF1KE3 AMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG NP_001 KCGHTNNLRPKKKVK 130 >>XP_016882687 (OMIM: 191321) PREDICTED: ubiquitin-60S r (203 aa) initn: 154 init1: 154 opt: 163 Z-score: 202.6 bits: 44.1 E(85289): 0.00015 Smith-Waterman score: 178; 29.3% identity (73.9% similar) in 92 aa overlap (1-88:41-132) 10 20 30 pF1KE3 MAPNASCLCVHVRSEEWDLMTFDANPYDSV : :. . . . :.. .:....: :.. XP_016 RLAAGAACADQDLAAVEEGGTAFREDGSSKMMPKDANMQIFVKTLTGKTITLEVEPSDTI 20 30 40 50 60 70 40 50 60 70 80 pF1KE3 KKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLK----VVKPSDE ...: ....: .: ..: :....: :. :.::.:.:.::.:.::.:. ...:: . XP_016 ENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLR 80 90 100 110 120 130 90 100 110 120 130 140 pF1KE3 ELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMA .: XP_016 QLAQKYNCDKMICRKYVCSDAWGAVGAAGVGVCPHPPLLSLCRCYARLHPRAVNCRKKKC 140 150 160 170 180 190 >>NP_001307947 (OMIM: 191321) ubiquitin-60S ribosomal pr (128 aa) initn: 154 init1: 154 opt: 154 Z-score: 195.1 bits: 42.1 E(85289): 0.00039 Smith-Waterman score: 165; 30.1% identity (75.9% similar) in 83 aa overlap (10-88:3-85) 10 20 30 40 50 60 pF1KE3 MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPR . :.. .:....: :.....: ....: .: ..: :....: :. NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 10 20 30 40 50 70 80 90 100 110 pF1KE3 RSLSSYGIDKEKTIHLTLK----VVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVK :.::.:.:.::.:.::.:. ...:: ..: NP_001 RTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKK 60 70 80 90 100 110 120 130 140 150 160 pF1KE3 AMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG NP_001 KCGHTNNLRPKKKVK 120 >>NP_003324 (OMIM: 191321) ubiquitin-60S ribosomal prote (128 aa) initn: 154 init1: 154 opt: 154 Z-score: 195.1 bits: 42.1 E(85289): 0.00039 Smith-Waterman score: 165; 30.1% identity (75.9% similar) in 83 aa overlap (10-88:3-85) 10 20 30 40 50 60 pF1KE3 MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPR . :.. .:....: :.....: ....: .: ..: :....: :. NP_003 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 10 20 30 40 50 70 80 90 100 110 pF1KE3 RSLSSYGIDKEKTIHLTLK----VVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVK :.::.:.:.::.:.::.:. ...:: ..: NP_003 RTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKK 60 70 80 90 100 110 120 130 140 150 160 pF1KE3 AMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG NP_003 KCGHTNNLRPKKKVK 120 >>NP_001029102 (OMIM: 191321) ubiquitin-60S ribosomal pr (128 aa) initn: 154 init1: 154 opt: 154 Z-score: 195.1 bits: 42.1 E(85289): 0.00039 Smith-Waterman score: 165; 30.1% identity (75.9% similar) in 83 aa overlap (10-88:3-85) 10 20 30 40 50 60 pF1KE3 MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPR . :.. .:....: :.....: ....: .: ..: :....: :. NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 10 20 30 40 50 70 80 90 100 110 pF1KE3 RSLSSYGIDKEKTIHLTLK----VVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVK :.::.:.:.::.:.::.:. ...:: ..: NP_001 RTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKK 60 70 80 90 100 110 120 130 140 150 160 pF1KE3 AMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG NP_001 KCGHTNNLRPKKKVK 120 >>NP_001307946 (OMIM: 191321) ubiquitin-60S ribosomal pr (128 aa) initn: 154 init1: 154 opt: 154 Z-score: 195.1 bits: 42.1 E(85289): 0.00039 Smith-Waterman score: 165; 30.1% identity (75.9% similar) in 83 aa overlap (10-88:3-85) 10 20 30 40 50 60 pF1KE3 MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPR . :.. .:....: :.....: ....: .: ..: :....: :. NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 10 20 30 40 50 70 80 90 100 110 pF1KE3 RSLSSYGIDKEKTIHLTLK----VVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVK :.::.:.:.::.:.::.:. ...:: ..: NP_001 RTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKK 60 70 80 90 100 110 120 130 140 150 160 pF1KE3 AMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG NP_001 KCGHTNNLRPKKKVK 120 >>NP_001307949 (OMIM: 191321) ubiquitin-60S ribosomal pr (128 aa) initn: 154 init1: 154 opt: 154 Z-score: 195.1 bits: 42.1 E(85289): 0.00039 Smith-Waterman score: 165; 30.1% identity (75.9% similar) in 83 aa overlap (10-88:3-85) 10 20 30 40 50 60 pF1KE3 MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPR . :.. .:....: :.....: ....: .: ..: :....: :. NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 10 20 30 40 50 70 80 90 100 110 pF1KE3 RSLSSYGIDKEKTIHLTLK----VVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVK :.::.:.:.::.:.::.:. ...:: ..: NP_001 RTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKK 60 70 80 90 100 110 120 130 140 150 160 pF1KE3 AMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG NP_001 KCGHTNNLRPKKKVK 120 >>NP_001307948 (OMIM: 191321) ubiquitin-60S ribosomal pr (128 aa) initn: 154 init1: 154 opt: 154 Z-score: 195.1 bits: 42.1 E(85289): 0.00039 Smith-Waterman score: 165; 30.1% identity (75.9% similar) in 83 aa overlap (10-88:3-85) 10 20 30 40 50 60 pF1KE3 MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPR . :.. .:....: :.....: ....: .: ..: :....: :. NP_001 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 10 20 30 40 50 70 80 90 100 110 pF1KE3 RSLSSYGIDKEKTIHLTLK----VVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVK :.::.:.:.::.:.::.:. ...:: ..: NP_001 RTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKK 60 70 80 90 100 110 120 130 140 150 160 pF1KE3 AMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG NP_001 KCGHTNNLRPKKKVK 120 165 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:41:00 2016 done: Mon Nov 7 01:41:01 2016 Total Scan time: 5.620 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]