FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3667, 165 aa 1>>>pF1KE3667 165 - 165 aa - 165 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8004+/-0.000794; mu= 9.3546+/- 0.047 mean_var=68.2318+/-13.697, 0's: 0 Z-trim(106.8): 23 B-trim: 0 in 0/51 Lambda= 0.155268 statistics sampled from 9189 (9211) to 9189 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.283), width: 16 Scan time: 1.940 The best scores are: opt bits E(32554) CCDS4662.1 UBD gene_id:10537|Hs108|chr6 ( 165) 1082 251.0 2.4e-67 CCDS9260.1 UBC gene_id:7316|Hs108|chr12 ( 685) 278 71.1 1.4e-12 >>CCDS4662.1 UBD gene_id:10537|Hs108|chr6 (165 aa) initn: 1082 init1: 1082 opt: 1082 Z-score: 1322.6 bits: 251.0 E(32554): 2.4e-67 Smith-Waterman score: 1082; 100.0% identity (100.0% similar) in 165 aa overlap (1-165:1-165) 10 20 30 40 50 60 pF1KE3 MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 RSLSSYGIDKEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 RSLSSYGIDKEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIE 70 80 90 100 110 120 130 140 150 160 pF1KE3 TKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG ::::::::::::::::::::::::::::::::::::::::::::: CCDS46 TKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 130 140 150 160 >>CCDS9260.1 UBC gene_id:7316|Hs108|chr12 (685 aa) initn: 154 init1: 154 opt: 278 Z-score: 339.2 bits: 71.1 E(32554): 1.4e-12 Smith-Waterman score: 278; 32.5% identity (68.2% similar) in 157 aa overlap (10-165:383-532) 10 20 30 pF1KE3 MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRS . :.. .:....: :.....: .... CCDS92 QLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQD 360 370 380 390 400 410 40 50 60 70 80 90 pF1KE3 KTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLKVVKPSDEELPLFL-VESGDE : .: ..: :....: :. :.::.:.:.::.:.::.:.. . .:. . .: CCDS92 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG----MQIFVKTLTG-- 420 430 440 450 460 100 110 120 130 140 150 pF1KE3 AKRHLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFL : :.:. :... .::: :. : :: :. : . ::.::::. ..::.:.: . : : CCDS92 -KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 470 480 490 500 510 520 160 pF1KE3 ACYCIGG . :: CCDS92 VLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 530 540 550 560 570 580 >-- initn: 154 init1: 154 opt: 278 Z-score: 339.2 bits: 71.1 E(32554): 1.4e-12 Smith-Waterman score: 278; 32.5% identity (68.2% similar) in 157 aa overlap (10-165:231-380) 10 20 30 pF1KE3 MAPNASCLCVHVRSEEWDLMTFDANPYDSVKKIKEHVRS . :.. .:....: :.....: .... CCDS92 QLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQD 210 220 230 240 250 260 40 50 60 70 80 90 pF1KE3 KTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLKVVKPSDEELPLFL-VESGDE : .: ..: :....: :. :.::.:.:.::.:.::.:.. . .:. . .: CCDS92 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG----MQIFVKTLTG-- 270 280 290 300 310 100 110 120 130 140 150 pF1KE3 AKRHLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFL : :.:. :... .::: :. : :: :. : . ::.::::. ..::.:.: . : : CCDS92 -KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 320 330 340 350 360 370 160 pF1KE3 ACYCIGG . :: CCDS92 VLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 380 390 400 410 420 430 165 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:40:59 2016 done: Mon Nov 7 01:41:00 2016 Total Scan time: 1.940 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]