FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3588, 786 aa 1>>>pF1KE3588 786 - 786 aa - 786 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.8858+/-0.000881; mu= 13.4579+/- 0.053 mean_var=123.7085+/-24.194, 0's: 0 Z-trim(110.1): 21 B-trim: 0 in 0/54 Lambda= 0.115312 statistics sampled from 11373 (11391) to 11373 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.35), width: 16 Scan time: 3.240 The best scores are: opt bits E(32554) CCDS10467.1 CCNF gene_id:899|Hs108|chr16 ( 786) 5305 894.2 0 CCDS45031.1 CCNA1 gene_id:8900|Hs108|chr13 ( 421) 399 77.9 3.8e-14 CCDS45030.1 CCNA1 gene_id:8900|Hs108|chr13 ( 464) 399 77.9 4.1e-14 CCDS9357.1 CCNA1 gene_id:8900|Hs108|chr13 ( 465) 399 77.9 4.1e-14 CCDS3723.1 CCNA2 gene_id:890|Hs108|chr4 ( 432) 377 74.2 4.9e-13 >>CCDS10467.1 CCNF gene_id:899|Hs108|chr16 (786 aa) initn: 5305 init1: 5305 opt: 5305 Z-score: 4774.5 bits: 894.2 E(32554): 0 Smith-Waterman score: 5305; 100.0% identity (100.0% similar) in 786 aa overlap (1-786:1-786) 10 20 30 40 50 60 pF1KE3 MGSGGVVHCRCAKCFCYPTKRRIRRRPRNLTILSLPEDVLFHILKWLSVEDILAVRAVHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MGSGGVVHCRCAKCFCYPTKRRIRRRPRNLTILSLPEDVLFHILKWLSVEDILAVRAVHS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 QLKDLVDNHASVWACASFQELWPSPGNLKLFERAAEKGNFEAAVKLGIAYLYNEGLSVSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 QLKDLVDNHASVWACASFQELWPSPGNLKLFERAAEKGNFEAAVKLGIAYLYNEGLSVSD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 EARAEVNGLKASRFFSLAERLNVGAAPFIWLFIRPPWSVSGSCCKAVVHESLRAECQLQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 EARAEVNGLKASRFFSLAERLNVGAAPFIWLFIRPPWSVSGSCCKAVVHESLRAECQLQR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 THKASILHCLGRVLSLFEDEEKQQQAHDLFEEAAHQGCLTSSYLLWESDRRTDVSDPGRC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 THKASILHCLGRVLSLFEDEEKQQQAHDLFEEAAHQGCLTSSYLLWESDRRTDVSDPGRC 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 LHSFRKLRDYAAKGCWEAQLSLAKACANANQLGLEVRASSEIVCQLFQASQAVSKQQVFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 LHSFRKLRDYAAKGCWEAQLSLAKACANANQLGLEVRASSEIVCQLFQASQAVSKQQVFS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 VQKGLNDTMRYILIDWLVEVATMKDFTSLCLHLTVECVDRYLRRRLVPRYRLQLLGIACM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 VQKGLNDTMRYILIDWLVEVATMKDFTSLCLHLTVECVDRYLRRRLVPRYRLQLLGIACM 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 VICTRFISKEILTIREAVWLTDNTYKYEDLVRMMGEIVSALEGKIRVPTVVDYKEVLLTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 VICTRFISKEILTIREAVWLTDNTYKYEDLVRMMGEIVSALEGKIRVPTVVDYKEVLLTL 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 VPVELRTQHLCSFLCELSLLHTSLSAYAPARLAAAALLLARLTHGQTQPWTTQLWDLTGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 VPVELRTQHLCSFLCELSLLHTSLSAYAPARLAAAALLLARLTHGQTQPWTTQLWDLTGF 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 SYEDLIPCVLSLHKKCFHDDAPKDYRQVSLTAVKQRFEDKRYGEISQEEVLSYSQLCAAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 SYEDLIPCVLSLHKKCFHDDAPKDYRQVSLTAVKQRFEDKRYGEISQEEVLSYSQLCAAL 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE3 GVTQDSPDPPTFLSTGEIHAFLSSPSGRRTKRKRENSLQEDRGSFVTTPTAELSSQEETL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 GVTQDSPDPPTFLSTGEIHAFLSSPSGRRTKRKRENSLQEDRGSFVTTPTAELSSQEETL 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE3 LGSFLDWSLDCCSGYEGDQESEGEKEGDVTAPSGILDVTVVYLNPEQHCCQESSDEEACP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 LGSFLDWSLDCCSGYEGDQESEGEKEGDVTAPSGILDVTVVYLNPEQHCCQESSDEEACP 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE3 EDKGPQDPQALALDTQIPATPGPKPLVRTSREPGKDVTTSGYSSVSTASPTSSVDGGLGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 EDKGPQDPQALALDTQIPATPGPKPLVRTSREPGKDVTTSGYSSVSTASPTSSVDGGLGA 670 680 690 700 710 720 730 740 750 760 770 780 pF1KE3 LPQPTSVLSLDSDSHTQPCHHQARKSCLQCRPPSPPESSVPQQQVKRINLCIHSEEEDMN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 LPQPTSVLSLDSDSHTQPCHHQARKSCLQCRPPSPPESSVPQQQVKRINLCIHSEEEDMN 730 740 750 760 770 780 pF1KE3 LGLVRL :::::: CCDS10 LGLVRL >>CCDS45031.1 CCNA1 gene_id:8900|Hs108|chr13 (421 aa) initn: 306 init1: 306 opt: 399 Z-score: 367.4 bits: 77.9 E(32554): 3.8e-14 Smith-Waterman score: 399; 28.1% identity (58.8% similar) in 342 aa overlap (200-529:84-413) 170 180 190 200 210 220 pF1KE3 ESLRAECQLQRTHKASILHCLGRVLSLFEDEEKQQQAHDLFEEAAHQG----CLTSSYLL .: .:. :.. . .:: : . . CCDS45 GQGITRIRCYSGSENAFPPAGKKALPDCGVQEPPKQGFDIYMDELEQGDRDSCSVREGMA 60 70 80 90 100 110 230 240 250 260 270 280 pF1KE3 WESDRRTDVSDPGRCLHSFRKLRDYAAKGCWEAQLSLAKACANANQLGLEVRASSEIVCQ .:. ..:.. :: : : :. . . .. :: . . ..:: .: .: . . CCDS45 FEDVYEVDTGTLKSDLH-F--LLDFNTVSPMLVDSSLLSQSEDISSLGTDVINVTEYAEE 120 130 140 150 160 170 290 300 310 320 330 340 pF1KE3 LFQASQAVS-----KQQVFSVQKGLNDTMRYILIDWLVEVATMKDFTSLCLHLTVECVDR ..: . . : . .. : ... :: ::.::::::. . . :.:.:. .:: CCDS45 IYQYLREAEIRHRPKAHYMKKQPDITEGMRTILVDWLVEVGEEYKLRAETLYLAVNFLDR 180 190 200 210 220 230 350 360 370 380 390 pF1KE3 YLRRRLVPRYRLQLLGIACMVICTRFISKEILT--IREAVWLTDNTYKYEDLVRMMGEIV .: : : .:::.: : :.. ... .:: . : :..::.:: ..:..: .. CCDS45 FLSCMSVLRGKLQLVGTAAMLLASKY--EEIYPPEVDEFVYITDDTYTKRQLLKMEHLLL 240 250 260 270 280 400 410 420 430 440 450 pF1KE3 SALEGKIRVPTVVDYKEVLLTLVPVELRTQHLCSFLCELSLLHTS-LSAYAPARLAAAAL ..: . :::. .. : : .::..: ... :::::... . : :. .::::. CCDS45 KVLAFDLTVPTTNQFLLQYLRRQGVCVRTENLAKYVAELSLLEADPFLKYLPSLIAAAAF 290 300 310 320 330 340 460 470 480 490 500 510 pF1KE3 LLARLTHGQTQPWTTQLWDLTGFSYEDLIPCVLSLHKKCFHDDAPKDYRQVSLTAVKQRF :: : .. . : : .::.: ...::. ::: . : :. .: :..... CCDS45 CLANYTVNK-HFWPETLAAFTGYSLSEIVPCLSELHKAYL--DIPHRPQQ----AIREKY 350 360 370 380 390 400 520 530 540 550 560 570 pF1KE3 EDKRYGEISQEEVLSYSQLCAALGVTQDSPDPPTFLSTGEIHAFLSSPSGRRTKRKRENS . ..: .: : CCDS45 KASKYLCVSLMEPPAVLLLQ 410 420 >>CCDS45030.1 CCNA1 gene_id:8900|Hs108|chr13 (464 aa) initn: 306 init1: 306 opt: 399 Z-score: 366.8 bits: 77.9 E(32554): 4.1e-14 Smith-Waterman score: 399; 28.1% identity (58.8% similar) in 342 aa overlap (200-529:127-456) 170 180 190 200 210 220 pF1KE3 ESLRAECQLQRTHKASILHCLGRVLSLFEDEEKQQQAHDLFEEAAHQG----CLTSSYLL .: .:. :.. . .:: : . . CCDS45 GQGITRIRCYSGSENAFPPAGKKALPDCGVQEPPKQGFDIYMDELEQGDRDSCSVREGMA 100 110 120 130 140 150 230 240 250 260 270 280 pF1KE3 WESDRRTDVSDPGRCLHSFRKLRDYAAKGCWEAQLSLAKACANANQLGLEVRASSEIVCQ .:. ..:.. :: : : :. . . .. :: . . ..:: .: .: . . CCDS45 FEDVYEVDTGTLKSDLH-F--LLDFNTVSPMLVDSSLLSQSEDISSLGTDVINVTEYAEE 160 170 180 190 200 210 290 300 310 320 330 340 pF1KE3 LFQASQAVS-----KQQVFSVQKGLNDTMRYILIDWLVEVATMKDFTSLCLHLTVECVDR ..: . . : . .. : ... :: ::.::::::. . . :.:.:. .:: CCDS45 IYQYLREAEIRHRPKAHYMKKQPDITEGMRTILVDWLVEVGEEYKLRAETLYLAVNFLDR 220 230 240 250 260 270 350 360 370 380 390 pF1KE3 YLRRRLVPRYRLQLLGIACMVICTRFISKEILT--IREAVWLTDNTYKYEDLVRMMGEIV .: : : .:::.: : :.. ... .:: . : :..::.:: ..:..: .. CCDS45 FLSCMSVLRGKLQLVGTAAMLLASKY--EEIYPPEVDEFVYITDDTYTKRQLLKMEHLLL 280 290 300 310 320 330 400 410 420 430 440 450 pF1KE3 SALEGKIRVPTVVDYKEVLLTLVPVELRTQHLCSFLCELSLLHTS-LSAYAPARLAAAAL ..: . :::. .. : : .::..: ... :::::... . : :. .::::. CCDS45 KVLAFDLTVPTTNQFLLQYLRRQGVCVRTENLAKYVAELSLLEADPFLKYLPSLIAAAAF 340 350 360 370 380 390 460 470 480 490 500 510 pF1KE3 LLARLTHGQTQPWTTQLWDLTGFSYEDLIPCVLSLHKKCFHDDAPKDYRQVSLTAVKQRF :: : .. . : : .::.: ...::. ::: . : :. .: :..... CCDS45 CLANYTVNK-HFWPETLAAFTGYSLSEIVPCLSELHKAYL--DIPHRPQQ----AIREKY 400 410 420 430 440 520 530 540 550 560 570 pF1KE3 EDKRYGEISQEEVLSYSQLCAALGVTQDSPDPPTFLSTGEIHAFLSSPSGRRTKRKRENS . ..: .: : CCDS45 KASKYLCVSLMEPPAVLLLQ 450 460 >>CCDS9357.1 CCNA1 gene_id:8900|Hs108|chr13 (465 aa) initn: 306 init1: 306 opt: 399 Z-score: 366.8 bits: 77.9 E(32554): 4.1e-14 Smith-Waterman score: 399; 28.1% identity (58.8% similar) in 342 aa overlap (200-529:128-457) 170 180 190 200 210 220 pF1KE3 ESLRAECQLQRTHKASILHCLGRVLSLFEDEEKQQQAHDLFEEAAHQG----CLTSSYLL .: .:. :.. . .:: : . . CCDS93 GQGITRIRCYSGSENAFPPAGKKALPDCGVQEPPKQGFDIYMDELEQGDRDSCSVREGMA 100 110 120 130 140 150 230 240 250 260 270 280 pF1KE3 WESDRRTDVSDPGRCLHSFRKLRDYAAKGCWEAQLSLAKACANANQLGLEVRASSEIVCQ .:. ..:.. :: : : :. . . .. :: . . ..:: .: .: . . CCDS93 FEDVYEVDTGTLKSDLH-F--LLDFNTVSPMLVDSSLLSQSEDISSLGTDVINVTEYAEE 160 170 180 190 200 210 290 300 310 320 330 340 pF1KE3 LFQASQAVS-----KQQVFSVQKGLNDTMRYILIDWLVEVATMKDFTSLCLHLTVECVDR ..: . . : . .. : ... :: ::.::::::. . . :.:.:. .:: CCDS93 IYQYLREAEIRHRPKAHYMKKQPDITEGMRTILVDWLVEVGEEYKLRAETLYLAVNFLDR 220 230 240 250 260 270 350 360 370 380 390 pF1KE3 YLRRRLVPRYRLQLLGIACMVICTRFISKEILT--IREAVWLTDNTYKYEDLVRMMGEIV .: : : .:::.: : :.. ... .:: . : :..::.:: ..:..: .. CCDS93 FLSCMSVLRGKLQLVGTAAMLLASKY--EEIYPPEVDEFVYITDDTYTKRQLLKMEHLLL 280 290 300 310 320 330 400 410 420 430 440 450 pF1KE3 SALEGKIRVPTVVDYKEVLLTLVPVELRTQHLCSFLCELSLLHTS-LSAYAPARLAAAAL ..: . :::. .. : : .::..: ... :::::... . : :. .::::. CCDS93 KVLAFDLTVPTTNQFLLQYLRRQGVCVRTENLAKYVAELSLLEADPFLKYLPSLIAAAAF 340 350 360 370 380 390 460 470 480 490 500 510 pF1KE3 LLARLTHGQTQPWTTQLWDLTGFSYEDLIPCVLSLHKKCFHDDAPKDYRQVSLTAVKQRF :: : .. . : : .::.: ...::. ::: . : :. .: :..... CCDS93 CLANYTVNK-HFWPETLAAFTGYSLSEIVPCLSELHKAYL--DIPHRPQQ----AIREKY 400 410 420 430 440 520 530 540 550 560 570 pF1KE3 EDKRYGEISQEEVLSYSQLCAALGVTQDSPDPPTFLSTGEIHAFLSSPSGRRTKRKRENS . ..: .: : CCDS93 KASKYLCVSLMEPPAVLLLQ 450 460 >>CCDS3723.1 CCNA2 gene_id:890|Hs108|chr4 (432 aa) initn: 301 init1: 219 opt: 377 Z-score: 347.5 bits: 74.2 E(32554): 4.9e-13 Smith-Waterman score: 377; 32.6% identity (64.3% similar) in 230 aa overlap (302-526:203-422) 280 290 300 310 320 330 pF1KE3 LGLEVRASSEIVCQLFQASQAVSKQQVFSVQKGLNDTMRYILIDWLVEVATMKDFTSLCL : ....:: ::.::::::. . . : CCDS37 NEVPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETL 180 190 200 210 220 230 340 350 360 370 380 pF1KE3 HLTVECVDRYLRRRLVPRYRLQLLGIACMVICTRFISKEILT--IREAVWLTDNTYKYED ::.:. .::.: : : .:::.: : :.. ..: .:: . : :..::.:: .. CCDS37 HLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKF--EEIYPPEVAEFVYITDDTYTKKQ 240 250 260 270 280 290 390 400 410 420 430 440 pF1KE3 LVRMMGEIVSALEGKIRVPTVVDY-KEVLLTLVPVELRTQHLCSFLCELSLLHTS-LSAY ..:: ....: . .::: .. . .: :.. ... : :: ::::. .. : CCDS37 VLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKY 300 310 320 330 340 350 450 460 470 480 490 500 pF1KE3 APARLAAAALLLARLT-HGQTQPWTTQLWDLTGFSYEDLIPCVLSLHKKCFHDDAPKDYR :. .:.::. :: : ::. : .: ::.. :.: ::...::. .. ::. . CCDS37 LPSVIAGAAFHLALYTVTGQS--WPESLIRKTGYTLESLKPCLMDLHQTYLK--APQHAQ 360 370 380 390 400 510 520 530 540 550 560 pF1KE3 QVSLTAVKQRFEDKRYGEISQEEVLSYSQLCAALGVTQDSPDPPTFLSTGEIHAFLSSPS : ..........: .: CCDS37 Q----SIREKYKNSKYHGVSLLNPPETLNL 410 420 430 786 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:42:12 2016 done: Mon Nov 7 01:42:12 2016 Total Scan time: 3.240 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]