Result of FASTA (omim) for
pFN21AB4753
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4753, 108 aa
1>>>pF1KB4753 108 - 108 aa - 108 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1073+/-0.00027; mu= 11.3817+/- 0.017
mean_var=70.3216+/-14.428, 0's: 0 Z-trim(120.2): 29 B-trim: 0 in 0/56
Lambda= 0.152943
statistics sampled from 35153 (35184) to 35153 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.413), width: 16
Scan time: 4.400
The best scores are: opt bits E(85289)
NP_057394 (OMIM: 606007) DNA-directed RNA polymera ( 108) 805 185.5 1.5e-47
NP_006224 (OMIM: 180662) DNA-directed RNA polymera ( 125) 190 49.8 1.2e-06
XP_016857692 (OMIM: 604128) PREDICTED: transcripti ( 450) 166 44.9 0.00013
XP_016857690 (OMIM: 604128) PREDICTED: transcripti ( 466) 166 44.9 0.00013
XP_016857691 (OMIM: 604128) PREDICTED: transcripti ( 466) 166 44.9 0.00013
XP_016857689 (OMIM: 604128) PREDICTED: transcripti ( 487) 166 44.9 0.00013
XP_006716530 (OMIM: 601425) PREDICTED: transcripti ( 254) 160 43.4 0.0002
XP_011515880 (OMIM: 601425) PREDICTED: transcripti ( 266) 160 43.4 0.00021
NP_958845 (OMIM: 601425) transcription elongation ( 280) 160 43.4 0.00022
NP_006747 (OMIM: 601425) transcription elongation ( 301) 160 43.5 0.00023
XP_016857693 (OMIM: 604128) PREDICTED: transcripti ( 327) 158 43.0 0.00033
NP_003187 (OMIM: 604128) transcription elongation ( 348) 158 43.1 0.00035
XP_006710927 (OMIM: 604128) PREDICTED: transcripti ( 351) 158 43.1 0.00035
XP_011540355 (OMIM: 604128) PREDICTED: transcripti ( 364) 158 43.1 0.00036
NP_942016 (OMIM: 604784) transcription elongation ( 272) 155 42.3 0.00045
XP_016883525 (OMIM: 604784) PREDICTED: transcripti ( 272) 155 42.3 0.00045
XP_016883526 (OMIM: 604784) PREDICTED: transcripti ( 272) 155 42.3 0.00045
XP_011527325 (OMIM: 604784) PREDICTED: transcripti ( 297) 155 42.4 0.00049
XP_011527329 (OMIM: 604784) PREDICTED: transcripti ( 297) 155 42.4 0.00049
XP_011527324 (OMIM: 604784) PREDICTED: transcripti ( 297) 155 42.4 0.00049
NP_003186 (OMIM: 604784) transcription elongation ( 299) 155 42.4 0.00049
XP_005260286 (OMIM: 604784) PREDICTED: transcripti ( 324) 155 42.4 0.00052
NP_001265714 (OMIM: 607525) DNA-directed RNA polym ( 126) 137 38.1 0.0039
NP_055411 (OMIM: 607525) DNA-directed RNA polymera ( 126) 137 38.1 0.0039
NP_001265715 (OMIM: 607525) DNA-directed RNA polym ( 126) 137 38.1 0.0039
NP_740753 (OMIM: 607525) DNA-directed RNA polymera ( 126) 137 38.1 0.0039
>>NP_057394 (OMIM: 606007) DNA-directed RNA polymerase I (108 aa)
initn: 805 init1: 805 opt: 805 Z-score: 974.8 bits: 185.5 E(85289): 1.5e-47
Smith-Waterman score: 805; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108)
10 20 30 40 50 60
pF1KB4 MLLFCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MLLFCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWE
10 20 30 40 50 60
70 80 90 100
pF1KB4 NVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD
::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 NVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD
70 80 90 100
>>NP_006224 (OMIM: 180662) DNA-directed RNA polymerase I (125 aa)
initn: 193 init1: 128 opt: 190 Z-score: 240.5 bits: 49.8 E(85289): 1.2e-06
Smith-Waterman score: 190; 27.3% identity (55.5% similar) in 110 aa overlap (4-108:16-125)
10 20 30 40
pF1KB4 MLLFCPGCGNGLIVEEGQ--RCHRFACNTCPYVHNITRKV--TNRKYP
:: :.: : .: . : .:: .: : .. . .:.
NP_006 MEPDGTYEPGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITH
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB4 KLKEVDDVLGGAAAWENVDSTAES-CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCG
.. :. .... .. .. : . : :: : .: :.: .. :.. : .: : .::
NP_006 EVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCG
70 80 90 100 110 120
pF1KB4 HRWRD
::: .
NP_006 HRWTE
>>XP_016857692 (OMIM: 604128) PREDICTED: transcription e (450 aa)
initn: 169 init1: 112 opt: 166 Z-score: 204.1 bits: 44.9 E(85289): 0.00013
Smith-Waterman score: 166; 55.0% identity (72.5% similar) in 40 aa overlap (69-108:273-310)
40 50 60 70 80 90
pF1KB4 TNRKYPKLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCC
: ::.. . :.:::::::::::: :
XP_016 LRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLC-
250 260 270 280 290 300
100
pF1KB4 NAQCGHRWRD
.::.::.:
XP_016 -NECGNRWKDEQVCHLSTDGIGFLRSTEERKNILHLDHASLESASTDGISFEPGHSQGWE
310 320 330 340 350 360
>>XP_016857690 (OMIM: 604128) PREDICTED: transcription e (466 aa)
initn: 169 init1: 112 opt: 166 Z-score: 203.9 bits: 44.9 E(85289): 0.00013
Smith-Waterman score: 166; 55.0% identity (72.5% similar) in 40 aa overlap (69-108:289-326)
40 50 60 70 80 90
pF1KB4 TNRKYPKLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCC
: ::.. . :.:::::::::::: :
XP_016 LRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLC-
260 270 280 290 300 310
100
pF1KB4 NAQCGHRWRD
.::.::.:
XP_016 -NECGNRWKDEQVCHLSTDGIGFLRSTEERKNILHLDHASLESASTDGISFEPGHSQGWE
320 330 340 350 360 370
>>XP_016857691 (OMIM: 604128) PREDICTED: transcription e (466 aa)
initn: 169 init1: 112 opt: 166 Z-score: 203.9 bits: 44.9 E(85289): 0.00013
Smith-Waterman score: 166; 55.0% identity (72.5% similar) in 40 aa overlap (69-108:289-326)
40 50 60 70 80 90
pF1KB4 TNRKYPKLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCC
: ::.. . :.:::::::::::: :
XP_016 LRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLC-
260 270 280 290 300 310
100
pF1KB4 NAQCGHRWRD
.::.::.:
XP_016 -NECGNRWKDEQVCHLSTDGIGFLRSTEERKNILHLDHASLESASTDGISFEPGHSQGWE
320 330 340 350 360 370
>>XP_016857689 (OMIM: 604128) PREDICTED: transcription e (487 aa)
initn: 169 init1: 112 opt: 166 Z-score: 203.6 bits: 44.9 E(85289): 0.00013
Smith-Waterman score: 166; 55.0% identity (72.5% similar) in 40 aa overlap (69-108:310-347)
40 50 60 70 80 90
pF1KB4 TNRKYPKLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCC
: ::.. . :.:::::::::::: :
XP_016 LRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLC-
280 290 300 310 320 330
100
pF1KB4 NAQCGHRWRD
.::.::.:
XP_016 -NECGNRWKDEQVCHLSTDGIGFLRSTEERKNILHLDHASLESASTDGISFEPGHSQGWE
340 350 360 370 380 390
>>XP_006716530 (OMIM: 601425) PREDICTED: transcription e (254 aa)
initn: 160 init1: 113 opt: 160 Z-score: 200.4 bits: 43.4 E(85289): 0.0002
Smith-Waterman score: 160; 52.5% identity (72.5% similar) in 40 aa overlap (68-107:215-252)
40 50 60 70 80 90
pF1KB4 VTNRKYPKLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKC
.: ::.. . :.:::::::::::: :
XP_006 ELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC
190 200 210 220 230 240
100
pF1KB4 CNAQCGHRWRD
.::.::.
XP_006 --NECGNRWKFC
250
>>XP_011515880 (OMIM: 601425) PREDICTED: transcription e (266 aa)
initn: 160 init1: 113 opt: 160 Z-score: 200.1 bits: 43.4 E(85289): 0.00021
Smith-Waterman score: 160; 52.5% identity (72.5% similar) in 40 aa overlap (68-107:227-264)
40 50 60 70 80 90
pF1KB4 VTNRKYPKLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKC
.: ::.. . :.:::::::::::: :
XP_011 ELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC
200 210 220 230 240 250
100
pF1KB4 CNAQCGHRWRD
.::.::.
XP_011 --NECGNRWKFC
260
>>NP_958845 (OMIM: 601425) transcription elongation fact (280 aa)
initn: 160 init1: 113 opt: 160 Z-score: 199.8 bits: 43.4 E(85289): 0.00022
Smith-Waterman score: 160; 52.5% identity (72.5% similar) in 40 aa overlap (68-107:241-278)
40 50 60 70 80 90
pF1KB4 VTNRKYPKLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKC
.: ::.. . :.:::::::::::: :
NP_958 ELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC
220 230 240 250 260 270
100
pF1KB4 CNAQCGHRWRD
.::.::.
NP_958 --NECGNRWKFC
280
>>NP_006747 (OMIM: 601425) transcription elongation fact (301 aa)
initn: 160 init1: 113 opt: 160 Z-score: 199.4 bits: 43.5 E(85289): 0.00023
Smith-Waterman score: 160; 52.5% identity (72.5% similar) in 40 aa overlap (68-107:262-299)
40 50 60 70 80 90
pF1KB4 VTNRKYPKLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKC
.: ::.. . :.:::::::::::: :
NP_006 ELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC
240 250 260 270 280 290
100
pF1KB4 CNAQCGHRWRD
.::.::.
NP_006 --NECGNRWKFC
300
108 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 21:49:29 2016 done: Sat Nov 5 21:49:29 2016
Total Scan time: 4.400 Total Display time: -0.050
Function used was FASTA [36.3.4 Apr, 2011]