FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1363, 585 aa 1>>>pF1KE1363 585 - 585 aa - 585 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.7460+/-0.000911; mu= 8.8608+/- 0.055 mean_var=148.0087+/-29.609, 0's: 0 Z-trim(110.1): 18 B-trim: 40 in 1/52 Lambda= 0.105422 statistics sampled from 11351 (11359) to 11351 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.349), width: 16 Scan time: 3.680 The best scores are: opt bits E(32554) CCDS46935.1 EIF2A gene_id:83939|Hs108|chr3 ( 585) 3956 613.6 2.2e-175 CCDS82860.1 EIF2A gene_id:83939|Hs108|chr3 ( 580) 3904 605.6 5.3e-173 CCDS82861.1 EIF2A gene_id:83939|Hs108|chr3 ( 560) 3552 552.1 6.7e-157 CCDS82859.1 EIF2A gene_id:83939|Hs108|chr3 ( 524) 2862 447.1 2.5e-125 >>CCDS46935.1 EIF2A gene_id:83939|Hs108|chr3 (585 aa) initn: 3956 init1: 3956 opt: 3956 Z-score: 3262.1 bits: 613.6 E(32554): 2.2e-175 Smith-Waterman score: 3956; 99.8% identity (100.0% similar) in 585 aa overlap (1-585:1-585) 10 20 30 40 50 60 pF1KE1 MAPSTPLLTVRGSEGLYMVNGPPHFTESTVFPRESGKNCKVCIFSKDGTLFAWGNGEKVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 MAPSTPLLTVRGSEGLYMVNGPPHFTESTVFPRESGKNCKVCIFSKDGTLFAWGNGEKVN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IISVTNKGLLHSFDLLKAVCLEFSPKNTVLATWQPYTTSKDGTAGIPNLQLYDVKTGTCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 IISVTNKGLLHSFDLLKAVCLEFSPKNTVLATWQPYTTSKDGTAGIPNLQLYDVKTGTCL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 KSFIQKKMQNWCPSWSEDETLCARNVNNEVHFFENNNFNTIANKLHLQKINDFVLSPGPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 KSFIQKKMQNWCPSWSEDETLCARNVNNEVHFFENNNFNTIANKLHLQKINDFVLSPGPQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 PYKVAVYVPGSKGAPSFVRLYQYPNFAGPHAALANKSFFKADKVTMLWNKKATAVLVIAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 PYKVAVYVPGSKGAPSFVRLYQYPNFAGPHAALANKSFFKADKVTMLWNKKATAVLVIAS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 TDVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 TDVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKAT 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 IFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 IFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDS 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 TYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSILHKYDVPSNAELWQVSWQPFLDGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 TYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSILHKYDVPSNAELWQVSWQPFLDGI 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 FPAKTITYQAVPSEVPNEEPKVATAYRPPALRNKPITNSKLHEEEPPQNMKPQSGNDKPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 FPAKTITYQAVPSEVPNEEPKVATAYRPPALRNKPITNSKLHEEEPPQNMKPQSGNDKPL 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE1 SKTALKNQRKHEAKKAAKQEARSDKSPDLAPTPAPQSTPRNTVSQSISGDPEIDKKIKNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 SKTALKNQRKHEAKKAAKQEARSDKSPDLAPTPAPQSTPRNTVSQSISGDPEIDKKIKNL 490 500 510 520 530 540 550 560 570 580 pF1KE1 KKKLKAIEQLKEQAATGKQLEKNQLEKIQKETALLQELEDLKLGI :::::::::::::::::::::::::::::::::::::::::.::: CCDS46 KKKLKAIEQLKEQAATGKQLEKNQLEKIQKETALLQELEDLELGI 550 560 570 580 >>CCDS82860.1 EIF2A gene_id:83939|Hs108|chr3 (580 aa) initn: 3523 init1: 3523 opt: 3904 Z-score: 3219.4 bits: 605.6 E(32554): 5.3e-173 Smith-Waterman score: 3904; 98.8% identity (99.1% similar) in 585 aa overlap (1-585:1-580) 10 20 30 40 50 60 pF1KE1 MAPSTPLLTVRGSEGLYMVNGPPHFTESTVFPRESGKNCKVCIFSKDGTLFAWGNGEKVN ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 MAPSTPLLTVRGSEGLYMVNGPPHFTESTVFPRESGKNCKVCIFSKDGTLFAWGNGE--- 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 IISVTNKGLLHSFDLLKAVCLEFSPKNTVLATWQPYTTSKDGTAGIPNLQLYDVKTGTCL .::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 --NVTNKGLLHSFDLLKAVCLEFSPKNTVLATWQPYTTSKDGTAGIPNLQLYDVKTGTCL 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 KSFIQKKMQNWCPSWSEDETLCARNVNNEVHFFENNNFNTIANKLHLQKINDFVLSPGPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 KSFIQKKMQNWCPSWSEDETLCARNVNNEVHFFENNNFNTIANKLHLQKINDFVLSPGPQ 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE1 PYKVAVYVPGSKGAPSFVRLYQYPNFAGPHAALANKSFFKADKVTMLWNKKATAVLVIAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 PYKVAVYVPGSKGAPSFVRLYQYPNFAGPHAALANKSFFKADKVTMLWNKKATAVLVIAS 180 190 200 210 220 230 250 260 270 280 290 300 pF1KE1 TDVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 TDVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKAT 240 250 260 270 280 290 310 320 330 340 350 360 pF1KE1 IFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 IFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDS 300 310 320 330 340 350 370 380 390 400 410 420 pF1KE1 TYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSILHKYDVPSNAELWQVSWQPFLDGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 TYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSILHKYDVPSNAELWQVSWQPFLDGI 360 370 380 390 400 410 430 440 450 460 470 480 pF1KE1 FPAKTITYQAVPSEVPNEEPKVATAYRPPALRNKPITNSKLHEEEPPQNMKPQSGNDKPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 FPAKTITYQAVPSEVPNEEPKVATAYRPPALRNKPITNSKLHEEEPPQNMKPQSGNDKPL 420 430 440 450 460 470 490 500 510 520 530 540 pF1KE1 SKTALKNQRKHEAKKAAKQEARSDKSPDLAPTPAPQSTPRNTVSQSISGDPEIDKKIKNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 SKTALKNQRKHEAKKAAKQEARSDKSPDLAPTPAPQSTPRNTVSQSISGDPEIDKKIKNL 480 490 500 510 520 530 550 560 570 580 pF1KE1 KKKLKAIEQLKEQAATGKQLEKNQLEKIQKETALLQELEDLKLGI :::::::::::::::::::::::::::::::::::::::::.::: CCDS82 KKKLKAIEQLKEQAATGKQLEKNQLEKIQKETALLQELEDLELGI 540 550 560 570 580 >>CCDS82861.1 EIF2A gene_id:83939|Hs108|chr3 (560 aa) initn: 3552 init1: 3552 opt: 3552 Z-score: 2930.3 bits: 552.1 E(32554): 6.7e-157 Smith-Waterman score: 3714; 95.6% identity (95.7% similar) in 585 aa overlap (1-585:1-560) 10 20 30 40 50 60 pF1KE1 MAPSTPLLTVRGSEGLYMVNGPPHFTESTVFPRESGKNCKVCIFSKDGTLFAWGNGEKVN ::::::::::::::::::::::::::::::::: :: CCDS82 MAPSTPLLTVRGSEGLYMVNGPPHFTESTVFPR-------------------------VN 10 20 30 70 80 90 100 110 120 pF1KE1 IISVTNKGLLHSFDLLKAVCLEFSPKNTVLATWQPYTTSKDGTAGIPNLQLYDVKTGTCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 IISVTNKGLLHSFDLLKAVCLEFSPKNTVLATWQPYTTSKDGTAGIPNLQLYDVKTGTCL 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE1 KSFIQKKMQNWCPSWSEDETLCARNVNNEVHFFENNNFNTIANKLHLQKINDFVLSPGPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 KSFIQKKMQNWCPSWSEDETLCARNVNNEVHFFENNNFNTIANKLHLQKINDFVLSPGPQ 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE1 PYKVAVYVPGSKGAPSFVRLYQYPNFAGPHAALANKSFFKADKVTMLWNKKATAVLVIAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 PYKVAVYVPGSKGAPSFVRLYQYPNFAGPHAALANKSFFKADKVTMLWNKKATAVLVIAS 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE1 TDVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 TDVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKAT 220 230 240 250 260 270 310 320 330 340 350 360 pF1KE1 IFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 IFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDS 280 290 300 310 320 330 370 380 390 400 410 420 pF1KE1 TYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSILHKYDVPSNAELWQVSWQPFLDGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 TYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSILHKYDVPSNAELWQVSWQPFLDGI 340 350 360 370 380 390 430 440 450 460 470 480 pF1KE1 FPAKTITYQAVPSEVPNEEPKVATAYRPPALRNKPITNSKLHEEEPPQNMKPQSGNDKPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 FPAKTITYQAVPSEVPNEEPKVATAYRPPALRNKPITNSKLHEEEPPQNMKPQSGNDKPL 400 410 420 430 440 450 490 500 510 520 530 540 pF1KE1 SKTALKNQRKHEAKKAAKQEARSDKSPDLAPTPAPQSTPRNTVSQSISGDPEIDKKIKNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 SKTALKNQRKHEAKKAAKQEARSDKSPDLAPTPAPQSTPRNTVSQSISGDPEIDKKIKNL 460 470 480 490 500 510 550 560 570 580 pF1KE1 KKKLKAIEQLKEQAATGKQLEKNQLEKIQKETALLQELEDLKLGI :::::::::::::::::::::::::::::::::::::::::.::: CCDS82 KKKLKAIEQLKEQAATGKQLEKNQLEKIQKETALLQELEDLELGI 520 530 540 550 560 >>CCDS82859.1 EIF2A gene_id:83939|Hs108|chr3 (524 aa) initn: 2862 init1: 2862 opt: 2862 Z-score: 2363.5 bits: 447.1 E(32554): 2.5e-125 Smith-Waterman score: 3392; 89.4% identity (89.6% similar) in 585 aa overlap (1-585:1-524) 10 20 30 40 50 60 pF1KE1 MAPSTPLLTVRGSEGLYMVNGPPHFTESTVFPRESGKNCKVCIFSKDGTLFAWGNGEKVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 MAPSTPLLTVRGSEGLYMVNGPPHFTESTVFPRESGKNCKVCIFSKDGTLFAWGNGEKVN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IISVTNKGLLHSFDLLKAVCLEFSPKNTVLATWQPYTTSKDGTAGIPNLQLYDVKTGTCL ::::::::::::::::::::::::::::::::::::: CCDS82 IISVTNKGLLHSFDLLKAVCLEFSPKNTVLATWQPYT----------------------- 70 80 90 130 140 150 160 170 180 pF1KE1 KSFIQKKMQNWCPSWSEDETLCARNVNNEVHFFENNNFNTIANKLHLQKINDFVLSPGPQ :::::::::::::::::::::: CCDS82 --------------------------------------NTIANKLHLQKINDFVLSPGPQ 100 110 190 200 210 220 230 240 pF1KE1 PYKVAVYVPGSKGAPSFVRLYQYPNFAGPHAALANKSFFKADKVTMLWNKKATAVLVIAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 PYKVAVYVPGSKGAPSFVRLYQYPNFAGPHAALANKSFFKADKVTMLWNKKATAVLVIAS 120 130 140 150 160 170 250 260 270 280 290 300 pF1KE1 TDVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 TDVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKAT 180 190 200 210 220 230 310 320 330 340 350 360 pF1KE1 IFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 IFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDS 240 250 260 270 280 290 370 380 390 400 410 420 pF1KE1 TYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSILHKYDVPSNAELWQVSWQPFLDGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 TYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSILHKYDVPSNAELWQVSWQPFLDGI 300 310 320 330 340 350 430 440 450 460 470 480 pF1KE1 FPAKTITYQAVPSEVPNEEPKVATAYRPPALRNKPITNSKLHEEEPPQNMKPQSGNDKPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 FPAKTITYQAVPSEVPNEEPKVATAYRPPALRNKPITNSKLHEEEPPQNMKPQSGNDKPL 360 370 380 390 400 410 490 500 510 520 530 540 pF1KE1 SKTALKNQRKHEAKKAAKQEARSDKSPDLAPTPAPQSTPRNTVSQSISGDPEIDKKIKNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 SKTALKNQRKHEAKKAAKQEARSDKSPDLAPTPAPQSTPRNTVSQSISGDPEIDKKIKNL 420 430 440 450 460 470 550 560 570 580 pF1KE1 KKKLKAIEQLKEQAATGKQLEKNQLEKIQKETALLQELEDLKLGI :::::::::::::::::::::::::::::::::::::::::.::: CCDS82 KKKLKAIEQLKEQAATGKQLEKNQLEKIQKETALLQELEDLELGI 480 490 500 510 520 585 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:48:07 2016 done: Mon Nov 7 01:48:07 2016 Total Scan time: 3.680 Total Display time: 0.060 Function used was FASTA [36.3.4 Apr, 2011]