Result of FASTA (omim) for pFN21AE1343
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1343, 261 aa
  1>>>pF1KE1343 261 - 261 aa - 261 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1082+/-0.000332; mu= 16.4982+/- 0.021
 mean_var=77.5751+/-15.812, 0's: 0 Z-trim(115.3): 53  B-trim: 0 in 0/57
 Lambda= 0.145617
 statistics sampled from 25666 (25729) to 25666 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.676), E-opt: 0.2 (0.302), width:  16
 Scan time:  6.600

The best scores are:                                      opt bits E(85289)
NP_006111 (OMIM: 142855) HLA class II histocompati ( 261) 1844 396.6 2.4e-110
NP_064440 (OMIM: 613503) HLA class II histocompati ( 255)  371 87.1 3.4e-17
NP_002110 (OMIM: 142930) HLA class II histocompati ( 250)  363 85.4 1.1e-16
NP_002113 (OMIM: 146880,212750) HLA class II histo ( 255)  360 84.8 1.7e-16
NP_291032 (OMIM: 142880) HLA class II histocompati ( 260)  348 82.3 9.8e-16
NP_001229454 (OMIM: 142880) HLA class II histocomp ( 260)  348 82.3 9.8e-16
NP_001229453 (OMIM: 142880) HLA class II histocomp ( 260)  348 82.3 9.8e-16
NP_061984 (OMIM: 142860) HLA class II histocompati ( 254)  339 80.4 3.6e-15
XP_006715142 (OMIM: 146880,212750) PREDICTED: HLA  ( 206)  270 65.8 7.1e-11
XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254)  174 45.7 9.7e-05
NP_620573 (OMIM: 104300,176100,176200,235200,61263 ( 256)  170 44.9 0.00018
NP_001522 (OMIM: 600764) major histocompatibility  ( 341)  168 44.6 0.00029
XP_011546040 (OMIM: 126200,142857,180300,181000) P ( 266)  162 43.2 0.00058
NP_001185787 (OMIM: 615161) HLA class II histocomp ( 227)  157 42.1  0.0011
NP_001230891 (OMIM: 123400,126200,212750,604305) H ( 261)  157 42.2  0.0012
NP_004039 (OMIM: 105200,109700,241600) beta-2-micr ( 119)  151 40.6  0.0016
XP_005254606 (OMIM: 105200,109700,241600) PREDICTE ( 122)  151 40.6  0.0016
NP_072049 (OMIM: 612735) major histocompatibility  ( 266)  153 41.3  0.0021
XP_011512862 (OMIM: 615161) PREDICTED: HLA class I ( 256)  150 40.7  0.0032
NP_001287719 (OMIM: 615161) HLA class II histocomp ( 264)  150 40.7  0.0033
NP_001230894 (OMIM: 126200,142857,180300,181000) m ( 266)  150 40.7  0.0033
XP_005249108 (OMIM: 615161) PREDICTED: HLA class I ( 275)  150 40.7  0.0034
NP_002112 (OMIM: 142858) HLA class II histocompati ( 258)  148 40.3  0.0043
NP_002111 (OMIM: 600629) HLA class II histocompati ( 273)  148 40.3  0.0045
NP_002115 (OMIM: 126200,142857,180300,181000) majo ( 266)  145 39.6  0.0069
NP_002114 (OMIM: 123400,126200,212750,604305) HLA  ( 261)  144 39.4  0.0078
NP_001230890 (OMIM: 123400,126200,212750,604305) H ( 269)  144 39.4   0.008


>>NP_006111 (OMIM: 142855) HLA class II histocompatibili  (261 aa)
 initn: 1844 init1: 1844 opt: 1844  Z-score: 2102.0  bits: 396.6 E(85289): 2.4e-110
Smith-Waterman score: 1844; 100.0% identity (100.0% similar) in 261 aa overlap (1-261:1-261)

               10        20        30        40        50        60
pF1KE1 MGHEQNQGAALLQMLPLLWLLPHSWAVPEAPTPMWPDDLQNHTFLHTVYCQDGSPSVGLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MGHEQNQGAALLQMLPLLWLLPHSWAVPEAPTPMWPDDLQNHTFLHTVYCQDGSPSVGLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 EAYDEDQLFFFDFSQNTRVPRLPEFADWAQEQGDAPAILFDKEFCEWMIQQIGPKLDGKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EAYDEDQLFFFDFSQNTRVPRLPEFADWAQEQGDAPAILFDKEFCEWMIQQIGPKLDGKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 PVSRGFPIAEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNWQHHSVPVEGFGPTFVSAVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PVSRGFPIAEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNWQHHSVPVEGFGPTFVSAVD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 GLSFQAFSYLNFTPEPSDIFSCIVTHEIDRYTAIAYWVPRNALPSDLLENVLCGVAFGLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GLSFQAFSYLNFTPEPSDIFSCIVTHEIDRYTAIAYWVPRNALPSDLLENVLCGVAFGLG
              190       200       210       220       230       240

              250       260 
pF1KE1 VLGIIVGIVLIIYFRKPCSGD
       :::::::::::::::::::::
NP_006 VLGIIVGIVLIIYFRKPCSGD
              250       260 

>>NP_064440 (OMIM: 613503) HLA class II histocompatibili  (255 aa)
 initn: 281 init1: 137 opt: 371  Z-score: 429.7  bits: 87.1 E(85289): 3.4e-17
Smith-Waterman score: 371; 30.7% identity (61.8% similar) in 241 aa overlap (20-252:7-240)

               10        20        30         40         50        
pF1KE1 MGHEQNQGAALLQMLPLLWLLPHSWAVPEAPTPMWPDDL-QNHTFLHTV-YCQDGSPSVG
                          ::  . :.  . .:   .:.  .:.  . : . :. .::  
NP_064              MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQ
                            10        20        30        40       

       60        70        80        90         100       110      
pF1KE1 LSEAYDEDQLFFFDFSQNTRVPRLPEFADWAQ--EQGDAPAILFDKEFCEWMIQQIGPKL
        .. .: :. :. :.  .  : .:: :. . .   :.    .   :.  :.:..:     
NP_064 YTHEFDGDEEFYVDLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQ-----
        50        60        70        80        90       100       

        120       130       140       150       160         170    
pF1KE1 DGKIPVSRGFPIAEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNW--QHHSVPVEGFGPT
       ...  ..   : . ::.  :. .:.::::.:.:.:.:::.....:  . ::: .:: . :
NP_064 SNSTAATNEVPEVTVFSKFPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSV-TEGVSET
            110       120       130       140       150        160 

           180       190       200       210       220        230  
pF1KE1 -FVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEIDRYTAIAYWVPRNALP-SDLLENVL
        :.:  :  ::  .:::.: :  ..:..: : :       . .: :.   : :.: :...
NP_064 SFLSKSDH-SFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLV
              170       180       190       200       210       220

            240       250       260       
pF1KE1 CGVAFGLGVLGIIVGIVLIIYFRKPCSGD      
       :......:..::.:: :.::               
NP_064 CALGLSVGLMGIVVGTVFIIQGLRSVGASRHQGLL
              230       240       250     

>>NP_002110 (OMIM: 142930) HLA class II histocompatibili  (250 aa)
 initn: 262 init1: 102 opt: 363  Z-score: 420.7  bits: 85.4 E(85289): 1.1e-16
Smith-Waterman score: 363; 32.2% identity (63.0% similar) in 211 aa overlap (49-252:38-240)

       20        30        40        50        60        70        
pF1KE1 WLLPHSWAVPEAPTPMWPDDLQNHTFLHTVYCQDGSPSVGLSEAYDEDQLFFFDFSQNTR
                                     . :. . :  ... .::.:::  :....  
NP_002 VLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSVDLKKSEA
        10        20        30        40        50        60       

       80        90         100       110       120       130      
pF1KE1 VPRLPEFADWAQ--EQGDAPAILFDKEFCEWMIQQIGPKLDGKIPVSRGFPIAEVFTLKP
       : :::::.:.:.   ::   .:   :   . .... . .   ..:     : . :.  . 
NP_002 VWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVP-----PRVTVLPKSR
        70        80        90       100       110            120  

        140       150       160        170        180       190    
pF1KE1 LEFGKPNTLVCFVSNLFPPMLTVNWQHHSVPV-EGFGPT-FVSAVDGLSFQAFSYLNFTP
       .:.:.:: :.:.:.:.:::.....: ...  : :: . : : :  : : :. : :: :.:
NP_002 VELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHL-FRKFHYLPFVP
            130       140       150       160       170        180 

          200       210          220       230       240       250 
pF1KE1 EPSDIFSCIVTHEIDRYTAIAYW---VPRNALPSDLLENVLCGVAFGLGVLGIIVGIVLI
          :...: : :       . .:   ::    : : .:...:......:..:..:: :::
NP_002 SAEDVYDCQVEHWGLDAPLLRHWELQVP--IPPPDAMETLVCALGLAIGLVGFLVGTVLI
             190       200         210       220       230         

             260  
pF1KE1 IYFRKPCSGD 
       :          
NP_002 IMGTYVSSVPR
     240       250

>>NP_002113 (OMIM: 146880,212750) HLA class II histocomp  (255 aa)
 initn: 345 init1: 141 opt: 360  Z-score: 417.2  bits: 84.8 E(85289): 1.7e-16
Smith-Waterman score: 360; 32.0% identity (63.1% similar) in 203 aa overlap (55-252:44-240)

           30        40        50        60        70        80    
pF1KE1 WAVPEAPTPMWPDDLQNHTFLHTVYCQDGSPSVGLSEAYDEDQLFFFDFSQNTRVPRLPE
                                     ::   .. .: :. :. :. ..  . : ::
NP_002 LTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYVDLERKETAWRWPE
            20        30        40        50        60        70   

             90       100       110       120       130       140  
pF1KE1 FADWA--QEQGDAPAILFDKEFCEWMIQQIGPKLDGKIPVSRGFPIAEVFTLKPLEFGKP
       :. ..  . ::    .   :.  . ::.. .     .  ..   : . ::. .:. .:.:
NP_002 FSKFGGFDPQGALRNMAVAKHNLNIMIKRYN-----STAATNEVPEVTVFSKSPVTLGQP
            80        90       100            110       120        

            150       160        170        180       190       200
pF1KE1 NTLVCFVSNLFPPMLTVNWQHHSVPV-EGFGPT-FVSAVDGLSFQAFSYLNFTPEPSDIF
       :::.:.:.:.:::.....:  ..  : :: . : :.:  :  ::  .:::.: :  ..:.
NP_002 NTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDH-SFFKISYLTFLPSADEIY
      130       140       150       160        170       180       

              210       220        230       240       250         
pF1KE1 SCIVTHEIDRYTAIAYWVPRNALP-SDLLENVLCGVAFGLGVLGIIVGIVLIIYFRKPCS
       .: : :       . .: :.   : :.: :.:.:......:..::.:: :.::       
NP_002 DCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFIIQGLRSVG
       190       200       210       220       230       240       

     260       
pF1KE1 GD      
               
NP_002 ASRHQGPL
       250     

>>NP_291032 (OMIM: 142880) HLA class II histocompatibili  (260 aa)
 initn: 347 init1: 140 opt: 348  Z-score: 403.5  bits: 82.3 E(85289): 9.8e-16
Smith-Waterman score: 348; 29.6% identity (61.1% similar) in 216 aa overlap (41-252:35-245)

               20        30        40        50        60        70
pF1KE1 LLQMLPLLWLLPHSWAVPEAPTPMWPDDLQNHTFLHTVYCQDGSPSVGLSEAYDEDQLFF
                                     .:.  .... :   :.  .   .:::..:.
NP_291 DRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQTHRPTGEFMFEFDEDEMFY
           10        20        30        40        50        60    

               80          90       100       110       120        
pF1KE1 FDFSQNTRVPRLPEFADWA--QEQGDAPAILFDKEFCEWMIQQIGPKLDGKIPVSRGFPI
        :....  : .: ::..    . ::    : . ..  . .::.     ...  ..   : 
NP_291 VDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQR-----SNHTQATNDPPE
           70        80        90       100            110         

      130       140       150       160        170       180       
pF1KE1 AEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNWQHHSVPV-EGFGPTFVSAVDGLSFQAF
       . ::  .:.:.:.::::.: ....:::.:.:.:  ..  : :: . ..       ::. :
NP_291 VTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKF
     120       130       140       150       160       170         

       190       200       210       220        230       240      
pF1KE1 SYLNFTPEPSDIFSCIVTHEIDRYTAIAYWVPRNALP-SDLLENVLCGVAFGLGVLGIIV
        ::.:.:   :...: : :       . .:  .. .   .  :.:::.... ::..::::
NP_291 HYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIV
     180       190       200       210       220       230         

        250       260       
pF1KE1 GIVLIIYFRKPCSGD      
       : ::::               
NP_291 GTVLIIKSLRSGHDPRAQGTL
     240       250       260

>>NP_001229454 (OMIM: 142880) HLA class II histocompatib  (260 aa)
 initn: 347 init1: 140 opt: 348  Z-score: 403.5  bits: 82.3 E(85289): 9.8e-16
Smith-Waterman score: 348; 29.6% identity (61.1% similar) in 216 aa overlap (41-252:35-245)

               20        30        40        50        60        70
pF1KE1 LLQMLPLLWLLPHSWAVPEAPTPMWPDDLQNHTFLHTVYCQDGSPSVGLSEAYDEDQLFF
                                     .:.  .... :   :.  .   .:::..:.
NP_001 DRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQTHRPTGEFMFEFDEDEMFY
           10        20        30        40        50        60    

               80          90       100       110       120        
pF1KE1 FDFSQNTRVPRLPEFADWA--QEQGDAPAILFDKEFCEWMIQQIGPKLDGKIPVSRGFPI
        :....  : .: ::..    . ::    : . ..  . .::.     ...  ..   : 
NP_001 VDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQR-----SNHTQATNDPPE
           70        80        90       100            110         

      130       140       150       160        170       180       
pF1KE1 AEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNWQHHSVPV-EGFGPTFVSAVDGLSFQAF
       . ::  .:.:.:.::::.: ....:::.:.:.:  ..  : :: . ..       ::. :
NP_001 VTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKF
     120       130       140       150       160       170         

       190       200       210       220        230       240      
pF1KE1 SYLNFTPEPSDIFSCIVTHEIDRYTAIAYWVPRNALP-SDLLENVLCGVAFGLGVLGIIV
        ::.:.:   :...: : :       . .:  .. .   .  :.:::.... ::..::::
NP_001 HYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIV
     180       190       200       210       220       230         

        250       260       
pF1KE1 GIVLIIYFRKPCSGD      
       : ::::               
NP_001 GTVLIIKSLRSGHDPRAQGTL
     240       250       260

>>NP_001229453 (OMIM: 142880) HLA class II histocompatib  (260 aa)
 initn: 347 init1: 140 opt: 348  Z-score: 403.5  bits: 82.3 E(85289): 9.8e-16
Smith-Waterman score: 348; 29.6% identity (61.1% similar) in 216 aa overlap (41-252:35-245)

               20        30        40        50        60        70
pF1KE1 LLQMLPLLWLLPHSWAVPEAPTPMWPDDLQNHTFLHTVYCQDGSPSVGLSEAYDEDQLFF
                                     .:.  .... :   :.  .   .:::..:.
NP_001 DRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQTHRPTGEFMFEFDEDEMFY
           10        20        30        40        50        60    

               80          90       100       110       120        
pF1KE1 FDFSQNTRVPRLPEFADWA--QEQGDAPAILFDKEFCEWMIQQIGPKLDGKIPVSRGFPI
        :....  : .: ::..    . ::    : . ..  . .::.     ...  ..   : 
NP_001 VDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQR-----SNHTQATNDPPE
           70        80        90       100            110         

      130       140       150       160        170       180       
pF1KE1 AEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNWQHHSVPV-EGFGPTFVSAVDGLSFQAF
       . ::  .:.:.:.::::.: ....:::.:.:.:  ..  : :: . ..       ::. :
NP_001 VTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKF
     120       130       140       150       160       170         

       190       200       210       220        230       240      
pF1KE1 SYLNFTPEPSDIFSCIVTHEIDRYTAIAYWVPRNALP-SDLLENVLCGVAFGLGVLGIIV
        ::.:.:   :...: : :       . .:  .. .   .  :.:::.... ::..::::
NP_001 HYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIV
     180       190       200       210       220       230         

        250       260       
pF1KE1 GIVLIIYFRKPCSGD      
       : ::::               
NP_001 GTVLIIKSLRSGHDPRAQGTL
     240       250       260

>>NP_061984 (OMIM: 142860) HLA class II histocompatibili  (254 aa)
 initn: 199 init1: 126 opt: 339  Z-score: 393.4  bits: 80.4 E(85289): 3.6e-15
Smith-Waterman score: 341; 28.9% identity (58.1% similar) in 246 aa overlap (14-252:13-239)

               10        20        30        40        50        60
pF1KE1 MGHEQNQGAALLQMLPLLWLLPHSWAVPEAPTPMWPDDLQNHTFLHTVYCQDGSPSVGLS
                    .. .:    .:::. :           .:..... .  . . :  . 
NP_061  MAISGVPVLGFFIIAVLMSAQESWAIKE-----------EHVIIQAEFYLNPDQSGEFM
                10        20                   30        40        

               70        80          90       100       110        
pF1KE1 EAYDEDQLFFFDFSQNTRVPRLPEFADWA--QEQGDAPAILFDKEFCEWMIQQIGPKLDG
         .: :..:  :....  : :: ::. .:  . ::    :  ::   : : ..     ..
NP_061 FDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKR-----SN
       50        60        70        80        90       100        

      120       130       140       150       160        170       
pF1KE1 KIPVSRGFPIAEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNWQHHSVPVE-GFGPT-FV
         :..   : . :.: .:.:. .::.:.::.... ::...:.: ... ::  : . : :.
NP_061 YTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFL
           110       120       130       140       150       160   

        180       190       200       210          220       230   
pF1KE1 SAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEIDRYTAIAYW---VPRNALPSDLLENVLC
          : : :. : :: : :   :...: : :       . .:   .: . :: .  :::.:
NP_061 PREDHL-FRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDAP-SPLP-ETTENVVC
            170       180       190       200        210        220

           240       250       260       
pF1KE1 GVAFGLGVLGIIVGIVLIIYFRKPCSGD      
       .... .:..:::.: ..::               
NP_061 ALGLTVGLVGIIIGTIFIIKGLRKSNAAERRGPL
              230       240       250    

>>XP_006715142 (OMIM: 146880,212750) PREDICTED: HLA clas  (206 aa)
 initn: 269 init1: 141 opt: 270  Z-score: 316.3  bits: 65.8 E(85289): 7.1e-11
Smith-Waterman score: 270; 30.4% identity (59.5% similar) in 168 aa overlap (55-218:44-205)

           30        40        50        60        70        80    
pF1KE1 WAVPEAPTPMWPDDLQNHTFLHTVYCQDGSPSVGLSEAYDEDQLFFFDFSQNTRVPRLPE
                                     ::   .. .: :. :. :. ..  . : ::
XP_006 LTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYVDLERKETAWRWPE
            20        30        40        50        60        70   

             90       100       110       120       130       140  
pF1KE1 FADWA--QEQGDAPAILFDKEFCEWMIQQIGPKLDGKIPVSRGFPIAEVFTLKPLEFGKP
       :. ..  . ::    .   :.  . ::.. .     .  ..   : . ::. .:. .:.:
XP_006 FSKFGGFDPQGALRNMAVAKHNLNIMIKRYN-----STAATNEVPEVTVFSKSPVTLGQP
            80        90       100            110       120        

            150       160        170        180       190       200
pF1KE1 NTLVCFVSNLFPPMLTVNWQHHSVPV-EGFGPT-FVSAVDGLSFQAFSYLNFTPEPSDIF
       :::.:.:.:.:::.....:  ..  : :: . : :.:  :  ::  .:::.: :  ..:.
XP_006 NTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDH-SFFKISYLTFLPSADEIY
      130       140       150       160        170       180       

              210       220       230       240       250       260
pF1KE1 SCIVTHEIDRYTAIAYWVPRNALPSDLLENVLCGVAFGLGVLGIIVGIVLIIYFRKPCSG
       .: : :       . .::                                          
XP_006 DCKVEHWGLDQPLLKHWVE                                         
       190       200                                               

>>XP_011507765 (OMIM: 600764) PREDICTED: major histocomp  (254 aa)
 initn: 138 init1:  66 opt: 174  Z-score: 206.1  bits: 45.7 E(85289): 9.7e-05
Smith-Waterman score: 174; 22.6% identity (57.4% similar) in 230 aa overlap (38-257:21-240)

        10        20        30        40        50           60    
pF1KE1 GAALLQMLPLLWLLPHSWAVPEAPTPMWPDDLQNHTFLHTVYCQ---DGSPSVGLSEAYD
                                     : ..::. . . :.   ::: .  :. :::
XP_011           MGELMAFLLPLIIVLMVKHSDSRSHTYQRMIGCELLEDGSTTGFLQYAYD
                         10        20        30        40        50

           70          80        90       100        110        120
pF1KE1 EDQLFFF--DFSQNTRVPRLPEFADWAQEQGDAPAILFDKEFCEWM-IQQIGPKLD-GKI
        .....:  :  .   :  . .    : : ..   .:..:.. :   :  .   :. :: 
XP_011 GQDFLIFNKDTLSWLAVDNVAHTIKQAWE-ANQHELLYQKNWLEEECIAWLKRFLEYGKD
               60        70         80        90       100         

              130       140       150       160          170       
pF1KE1 PVSRGFPIAEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNWQHHSVPVE---GFGPTFVS
        ..:  :   : . .   :   ..: : . ...:: . ..:....  .     .:  . :
XP_011 TLQRTEP-PLVRVNRKETFPGVTALFCKAHGFYPPEIYMTWMKNGEEIVQEIDYGDILPS
     110        120       130       140       150       160        

       180       190       200       210       220       230       
pF1KE1 AVDGLSFQAFSYLNFTPEPSDIFSCIVTHEIDRYTAIAYWVPRNALPSDLLENVLCGVAF
       . :: ..::.. ... :. :...:: : :     . ..  ::..   :. .  :. .:. 
XP_011 G-DG-TYQAWASIELDPQSSNLYSCHVEHC---GVHMVLQVPQE---SETIPLVMKAVSG
       170        180       190          200          210       220

       240       250       260           
pF1KE1 GLGVLGIIVGIVLIIYFRKPCSGD          
       .. .. ...:. .... :.:              
XP_011 SIVLVIVLAGVGVLVWRRRPREQNGAIYLPTPDR
              230       240       250    




261 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:50:43 2016 done: Mon Nov  7 01:50:44 2016
 Total Scan time:  6.600 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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