FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6343, 311 aa 1>>>pF1KE6343 311 - 311 aa - 311 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.3437+/-0.000393; mu= 20.7205+/- 0.024 mean_var=63.0673+/-12.858, 0's: 0 Z-trim(112.4): 12 B-trim: 0 in 0/53 Lambda= 0.161500 statistics sampled from 21305 (21311) to 21305 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.619), E-opt: 0.2 (0.25), width: 16 Scan time: 5.200 The best scores are: opt bits E(85289) NP_060352 (OMIM: 204300,601780,606725) ceroid-lipo ( 311) 2123 503.4 2.4e-142 >>NP_060352 (OMIM: 204300,601780,606725) ceroid-lipofusc (311 aa) initn: 2123 init1: 2123 opt: 2123 Z-score: 2676.6 bits: 503.4 E(85289): 2.4e-142 Smith-Waterman score: 2123; 100.0% identity (100.0% similar) in 311 aa overlap (1-311:1-311) 10 20 30 40 50 60 pF1KE6 MEATRRRQHLGATGGPGAQLGASFLQARHGSVSADEAARTAPFHLDLWFYFTLQNWVLDF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 MEATRRRQHLGATGGPGAQLGASFLQARHGSVSADEAARTAPFHLDLWFYFTLQNWVLDF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 GRPIAMLVFPLEWFPLNKPSVGDYFHMAYNVITPFLLLKLIERSPRTLPRSITYVSIIIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 GRPIAMLVFPLEWFPLNKPSVGDYFHMAYNVITPFLLLKLIERSPRTLPRSITYVSIIIF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 IMGASIHLVGDSVNHRLLFSGYQHHLSVRENPIIKNLKPETLIDSFELLYYYDEYLGHCM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 IMGASIHLVGDSVNHRLLFSGYQHHLSVRENPIIKNLKPETLIDSFELLYYYDEYLGHCM 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 WYIPFFLILFMYFSGCFTASKAESLIPGPALLLVAPSGLYYWYLVTEGQIFILFIFTFFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 WYIPFFLILFMYFSGCFTASKAESLIPGPALLLVAPSGLYYWYLVTEGQIFILFIFTFFA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 MLALVLHQKRKRLFLDSNGLFLFSSFALTLLLVALWVAWLWNDPVLRKKYPGVIYVPEPW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 MLALVLHQKRKRLFLDSNGLFLFSSFALTLLLVALWVAWLWNDPVLRKKYPGVIYVPEPW 250 260 270 280 290 300 310 pF1KE6 AFYTLHVSSRH ::::::::::: NP_060 AFYTLHVSSRH 310 311 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 12:17:49 2016 done: Tue Nov 8 12:17:49 2016 Total Scan time: 5.200 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]