FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5303, 263 aa 1>>>pF1KE5303 263 - 263 aa - 263 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4334+/-0.000863; mu= 13.3790+/- 0.052 mean_var=55.8587+/-11.367, 0's: 0 Z-trim(104.6): 21 B-trim: 0 in 0/48 Lambda= 0.171605 statistics sampled from 7978 (7983) to 7978 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.639), E-opt: 0.2 (0.245), width: 16 Scan time: 1.500 The best scores are: opt bits E(32554) CCDS14773.1 RPS4Y1 gene_id:6192|Hs108|chrY ( 263) 1756 442.9 1.1e-124 CCDS44028.1 RPS4Y2 gene_id:140032|Hs108|chrY ( 263) 1671 421.8 2.3e-118 CCDS14418.1 RPS4X gene_id:6191|Hs108|chrX ( 263) 1668 421.1 3.9e-118 >>CCDS14773.1 RPS4Y1 gene_id:6192|Hs108|chrY (263 aa) initn: 1756 init1: 1756 opt: 1756 Z-score: 2352.1 bits: 442.9 E(32554): 1.1e-124 Smith-Waterman score: 1756; 100.0% identity (100.0% similar) in 263 aa overlap (1-263:1-263) 10 20 30 40 50 60 pF1KE5 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 VKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 YKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 YKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 CMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 CMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPR 190 200 210 220 230 240 250 260 pF1KE5 GKGIRLTVAEERDKRLATKQSSG ::::::::::::::::::::::: CCDS14 GKGIRLTVAEERDKRLATKQSSG 250 260 >>CCDS44028.1 RPS4Y2 gene_id:140032|Hs108|chrY (263 aa) initn: 1671 init1: 1671 opt: 1671 Z-score: 2238.3 bits: 421.8 E(32554): 2.3e-118 Smith-Waterman score: 1671; 93.9% identity (98.9% similar) in 263 aa overlap (1-263:1-263) 10 20 30 40 50 60 pF1KE5 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK :::::::.:.:::::::::.::::::.::::::::::::::::.::: :::::::::::: CCDS44 VKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 YKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNL ::::::::::::.:::::::::::::::::::.:::::::::::::::: .::::::::. CCDS44 YKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 CMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPR ::::.::::::::::::::::::: ::::::::::::::::.:::::::::::::::::: CCDS44 CMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPR 190 200 210 220 230 240 250 260 pF1KE5 GKGIRLTVAEERDKRLATKQSSG :::::::.:::::::::.::::: CCDS44 GKGIRLTIAEERDKRLAAKQSSG 250 260 >>CCDS14418.1 RPS4X gene_id:6191|Hs108|chrX (263 aa) initn: 1668 init1: 1668 opt: 1668 Z-score: 2234.3 bits: 421.1 E(32554): 3.9e-118 Smith-Waterman score: 1668; 92.8% identity (98.1% similar) in 263 aa overlap (1-263:1-263) 10 20 30 40 50 60 pF1KE5 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: CCDS14 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK :::::::::::::::::.:.::::::::::::.::::.:::.::::::::::::: :::: CCDS14 VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 YKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNL ::::::::: ::.:::::::::::::::::::.::::::.:::: :::: .::::::::: CCDS14 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 CMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPR ::: :::::::.:::::::::::::::::::::::::::::::::::::.:::::::::: CCDS14 CMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR 190 200 210 220 230 240 250 260 pF1KE5 GKGIRLTVAEERDKRLATKQSSG :::::::.:::::::::.::::: CCDS14 GKGIRLTIAEERDKRLAAKQSSG 250 260 263 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 07:29:14 2016 done: Tue Nov 8 07:29:15 2016 Total Scan time: 1.500 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]