FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5227, 194 aa 1>>>pF1KE5227 194 - 194 aa - 194 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8942+/-0.000296; mu= 15.7220+/- 0.018 mean_var=67.4203+/-13.476, 0's: 0 Z-trim(117.9): 17 B-trim: 254 in 1/54 Lambda= 0.156199 statistics sampled from 30216 (30233) to 30216 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.742), E-opt: 0.2 (0.354), width: 16 Scan time: 5.590 The best scores are: opt bits E(85289) NP_258412 (OMIM: 147520,613850,616647) inosine tri ( 194) 1330 307.9 6.6e-84 NP_852470 (OMIM: 147520,613850,616647) inosine tri ( 177) 1201 278.8 3.5e-75 XP_006723627 (OMIM: 147520,613850,616647) PREDICTE ( 238) 937 219.4 3.6e-57 XP_011527536 (OMIM: 147520,613850,616647) PREDICTE ( 147) 932 218.1 5.4e-57 NP_001254552 (OMIM: 147520,613850,616647) inosine ( 153) 926 216.8 1.4e-56 NP_001311169 (OMIM: 147520,613850,616647) inosine ( 138) 922 215.8 2.4e-56 XP_006723628 (OMIM: 147520,613850,616647) PREDICTE ( 197) 533 128.3 7.8e-30 >>NP_258412 (OMIM: 147520,613850,616647) inosine triphos (194 aa) initn: 1330 init1: 1330 opt: 1330 Z-score: 1627.3 bits: 307.9 E(85289): 6.6e-84 Smith-Waterman score: 1330; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194) 10 20 30 40 50 60 pF1KE5 MAASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_258 MAASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_258 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 STGDPSQPVRLFRGRTSGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_258 STGDPSQPVRLFRGRTSGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFR 130 140 150 160 170 180 190 pF1KE5 ALLELQEYFGSLAA :::::::::::::: NP_258 ALLELQEYFGSLAA 190 >>NP_852470 (OMIM: 147520,613850,616647) inosine triphos (177 aa) initn: 1201 init1: 1201 opt: 1201 Z-score: 1470.8 bits: 278.8 E(85289): 3.5e-75 Smith-Waterman score: 1201; 100.0% identity (100.0% similar) in 172 aa overlap (23-194:6-177) 10 20 30 40 50 60 pF1KE5 MAASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA :::::::::::::::::::::::::::::::::::::: NP_852 MAASLVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA 10 20 30 40 70 80 90 100 110 120 pF1KE5 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_852 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE5 STGDPSQPVRLFRGRTSGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_852 STGDPSQPVRLFRGRTSGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFR 110 120 130 140 150 160 190 pF1KE5 ALLELQEYFGSLAA :::::::::::::: NP_852 ALLELQEYFGSLAA 170 >>XP_006723627 (OMIM: 147520,613850,616647) PREDICTED: i (238 aa) initn: 926 init1: 926 opt: 937 Z-score: 1147.5 bits: 219.4 E(85289): 3.6e-57 Smith-Waterman score: 937; 89.3% identity (91.8% similar) in 159 aa overlap (1-153:1-159) 10 20 30 40 50 60 pF1KE5 MAASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MAASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 STGDPSQPVRLFRGRTSGR------IVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNA ::::::::::::::::: : .. ::. .: : XP_006 STGDPSQPVRLFRGRTSERCHSSRHLACPRSSGAGSWHPEAARTLAGTPAFSLMDMSRRT 130 140 150 160 170 180 180 190 pF1KE5 VSHRFRALLELQEYFGSLAA XP_006 QRCLRRRRTLSPIASGPCWSCRSTLAVWQLDFCSWRRPLRPGIWGGLAQNLPHRAGTP 190 200 210 220 230 >>XP_011527536 (OMIM: 147520,613850,616647) PREDICTED: i (147 aa) initn: 930 init1: 930 opt: 932 Z-score: 1144.3 bits: 218.1 E(85289): 5.4e-57 Smith-Waterman score: 932; 96.6% identity (97.9% similar) in 145 aa overlap (1-143:1-145) 10 20 30 40 50 60 pF1KE5 MAASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MAASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 STGDPSQPVRLFRGRTSGR--IVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHR :::::::::::::::::: ..:: XP_011 STGDPSQPVRLFRGRTSGNSWLTAPEA 130 140 >>NP_001254552 (OMIM: 147520,613850,616647) inosine trip (153 aa) initn: 926 init1: 926 opt: 926 Z-score: 1136.7 bits: 216.8 E(85289): 1.4e-56 Smith-Waterman score: 960; 78.9% identity (78.9% similar) in 194 aa overlap (1-194:1-153) 10 20 30 40 50 60 pF1KE5 MAASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA ::::::::::::::::::::::: NP_001 MAASLVGKKIVFVTGNAKKLEEV------------------------------------- 10 20 70 80 90 100 110 120 pF1KE5 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ----QGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL 30 40 50 60 70 130 140 150 160 170 180 pF1KE5 STGDPSQPVRLFRGRTSGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 STGDPSQPVRLFRGRTSGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFR 80 90 100 110 120 130 190 pF1KE5 ALLELQEYFGSLAA :::::::::::::: NP_001 ALLELQEYFGSLAA 140 150 >>NP_001311169 (OMIM: 147520,613850,616647) inosine trip (138 aa) initn: 922 init1: 922 opt: 922 Z-score: 1132.5 bits: 215.8 E(85289): 2.4e-56 Smith-Waterman score: 922; 100.0% identity (100.0% similar) in 137 aa overlap (1-137:1-137) 10 20 30 40 50 60 pF1KE5 MAASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 STGDPSQPVRLFRGRTSGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFR ::::::::::::::::: NP_001 STGDPSQPVRLFRGRTSF 130 >>XP_006723628 (OMIM: 147520,613850,616647) PREDICTED: i (197 aa) initn: 654 init1: 519 opt: 533 Z-score: 656.6 bits: 128.3 E(85289): 7.8e-30 Smith-Waterman score: 567; 63.5% identity (66.0% similar) in 159 aa overlap (1-153:1-118) 10 20 30 40 50 60 pF1KE5 MAASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA ::::::::::::::::::::::: XP_006 MAASLVGKKIVFVTGNAKKLEEV------------------------------------- 10 20 70 80 90 100 110 120 pF1KE5 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 ----QGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL 30 40 50 60 70 130 140 150 160 170 pF1KE5 STGDPSQPVRLFRGRTSGR------IVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNA ::::::::::::::::: : .. ::. .: : XP_006 STGDPSQPVRLFRGRTSERCHSSRHLACPRSSGAGSWHPEAARTLAGTPAFSLMDMSRRT 80 90 100 110 120 130 180 190 pF1KE5 VSHRFRALLELQEYFGSLAA XP_006 QRCLRRRRTLSPIASGPCWSCRSTLAVWQLDFCSWRRPLRPGIWGGLAQNLPHRAGTP 140 150 160 170 180 190 194 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:41:44 2016 done: Mon Nov 7 22:41:44 2016 Total Scan time: 5.590 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]