FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5227, 194 aa 1>>>pF1KE5227 194 - 194 aa - 194 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1111+/-0.000672; mu= 14.5154+/- 0.040 mean_var=65.8807+/-13.342, 0's: 0 Z-trim(111.0): 9 B-trim: 350 in 1/50 Lambda= 0.158014 statistics sampled from 12064 (12071) to 12064 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.371), width: 16 Scan time: 1.960 The best scores are: opt bits E(32554) CCDS13051.1 ITPA gene_id:3704|Hs108|chr20 ( 194) 1330 311.2 2.5e-85 CCDS46576.1 ITPA gene_id:3704|Hs108|chr20 ( 177) 1201 281.8 1.7e-76 CCDS58762.1 ITPA gene_id:3704|Hs108|chr20 ( 153) 926 219.0 1.1e-57 >>CCDS13051.1 ITPA gene_id:3704|Hs108|chr20 (194 aa) initn: 1330 init1: 1330 opt: 1330 Z-score: 1645.3 bits: 311.2 E(32554): 2.5e-85 Smith-Waterman score: 1330; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194) 10 20 30 40 50 60 pF1KE5 MAASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MAASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 STGDPSQPVRLFRGRTSGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 STGDPSQPVRLFRGRTSGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFR 130 140 150 160 170 180 190 pF1KE5 ALLELQEYFGSLAA :::::::::::::: CCDS13 ALLELQEYFGSLAA 190 >>CCDS46576.1 ITPA gene_id:3704|Hs108|chr20 (177 aa) initn: 1201 init1: 1201 opt: 1201 Z-score: 1486.9 bits: 281.8 E(32554): 1.7e-76 Smith-Waterman score: 1201; 100.0% identity (100.0% similar) in 172 aa overlap (23-194:6-177) 10 20 30 40 50 60 pF1KE5 MAASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA :::::::::::::::::::::::::::::::::::::: CCDS46 MAASLVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA 10 20 30 40 70 80 90 100 110 120 pF1KE5 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE5 STGDPSQPVRLFRGRTSGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 STGDPSQPVRLFRGRTSGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFR 110 120 130 140 150 160 190 pF1KE5 ALLELQEYFGSLAA :::::::::::::: CCDS46 ALLELQEYFGSLAA 170 >>CCDS58762.1 ITPA gene_id:3704|Hs108|chr20 (153 aa) initn: 926 init1: 926 opt: 926 Z-score: 1149.0 bits: 219.0 E(32554): 1.1e-57 Smith-Waterman score: 960; 78.9% identity (78.9% similar) in 194 aa overlap (1-194:1-153) 10 20 30 40 50 60 pF1KE5 MAASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA ::::::::::::::::::::::: CCDS58 MAASLVGKKIVFVTGNAKKLEEV------------------------------------- 10 20 70 80 90 100 110 120 pF1KE5 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 ----QGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL 30 40 50 60 70 130 140 150 160 170 180 pF1KE5 STGDPSQPVRLFRGRTSGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 STGDPSQPVRLFRGRTSGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFR 80 90 100 110 120 130 190 pF1KE5 ALLELQEYFGSLAA :::::::::::::: CCDS58 ALLELQEYFGSLAA 140 150 194 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:41:43 2016 done: Mon Nov 7 22:41:43 2016 Total Scan time: 1.960 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]