FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3946, 291 aa 1>>>pF1KE3946 291 - 291 aa - 291 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.3765+/-0.000382; mu= 10.4779+/- 0.024 mean_var=92.6163+/-18.355, 0's: 0 Z-trim(114.5): 8 B-trim: 248 in 1/49 Lambda= 0.133269 statistics sampled from 24364 (24372) to 24364 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.286), width: 16 Scan time: 7.210 The best scores are: opt bits E(85289) NP_219484 (OMIM: 612981) U3 small nucleolar ribonu ( 291) 1939 382.8 4.1e-106 NP_001307233 (OMIM: 612981) U3 small nucleolar rib ( 289) 1911 377.5 1.7e-104 NP_001307235 (OMIM: 612981) U3 small nucleolar rib ( 236) 1533 304.7 1.1e-82 NP_001307236 (OMIM: 612981) U3 small nucleolar rib ( 236) 1533 304.7 1.1e-82 NP_001307238 (OMIM: 612981) U3 small nucleolar rib ( 206) 1388 276.8 2.4e-74 NP_001307239 (OMIM: 612981) U3 small nucleolar rib ( 206) 1388 276.8 2.4e-74 NP_001307240 (OMIM: 612981) U3 small nucleolar rib ( 203) 1355 270.5 1.9e-72 NP_001307234 (OMIM: 612981) U3 small nucleolar rib ( 273) 1303 260.5 2.5e-69 >>NP_219484 (OMIM: 612981) U3 small nucleolar ribonucleo (291 aa) initn: 1939 init1: 1939 opt: 1939 Z-score: 2026.1 bits: 382.8 E(85289): 4.1e-106 Smith-Waterman score: 1939; 100.0% identity (100.0% similar) in 291 aa overlap (1-291:1-291) 10 20 30 40 50 60 pF1KE3 MLRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_219 MLRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 DAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_219 DAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_219 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 EAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_219 EAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDHR 190 200 210 220 230 240 250 260 270 280 290 pF1KE3 NVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE ::::::::::::::::::::::::::::::::::::::::::::::::::: NP_219 NVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE 250 260 270 280 290 >>NP_001307233 (OMIM: 612981) U3 small nucleolar ribonuc (289 aa) initn: 1531 init1: 1531 opt: 1911 Z-score: 1997.0 bits: 377.5 E(85289): 1.7e-104 Smith-Waterman score: 1911; 99.3% identity (99.3% similar) in 291 aa overlap (1-291:1-289) 10 20 30 40 50 60 pF1KE3 MLRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MLRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 DAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE ::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DAG--GVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMS 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE3 EAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDHR 180 190 200 210 220 230 250 260 270 280 290 pF1KE3 NVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE ::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE 240 250 260 270 280 >>NP_001307235 (OMIM: 612981) U3 small nucleolar ribonuc (236 aa) initn: 1533 init1: 1533 opt: 1533 Z-score: 1605.6 bits: 304.7 E(85289): 1.1e-82 Smith-Waterman score: 1533; 99.6% identity (100.0% similar) in 227 aa overlap (65-291:10-236) 40 50 60 70 80 90 pF1KE3 ALEENRLIPTELRREALALQGSLEFDDAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPS .::::::::::::::::::::::::::::: NP_001 MMLEVKVTIQGVTSHVDDEYRWAGVEDPKVMITTSRDPS 10 20 30 100 110 120 130 140 150 pF1KE3 SRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHL 40 50 60 70 80 90 160 170 180 190 200 210 pF1KE3 PFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDS 100 110 120 130 140 150 220 230 240 250 260 270 pF1KE3 HRVITFANQDDYISFRHHVYKKTDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 HRVITFANQDDYISFRHHVYKKTDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWR 160 170 180 190 200 210 280 290 pF1KE3 WHPYTNTARKRVFLSTE ::::::::::::::::: NP_001 WHPYTNTARKRVFLSTE 220 230 >>NP_001307236 (OMIM: 612981) U3 small nucleolar ribonuc (236 aa) initn: 1533 init1: 1533 opt: 1533 Z-score: 1605.6 bits: 304.7 E(85289): 1.1e-82 Smith-Waterman score: 1533; 99.6% identity (100.0% similar) in 227 aa overlap (65-291:10-236) 40 50 60 70 80 90 pF1KE3 ALEENRLIPTELRREALALQGSLEFDDAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPS .::::::::::::::::::::::::::::: NP_001 MMLEVKVTIQGVTSHVDDEYRWAGVEDPKVMITTSRDPS 10 20 30 100 110 120 130 140 150 pF1KE3 SRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHL 40 50 60 70 80 90 160 170 180 190 200 210 pF1KE3 PFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDS 100 110 120 130 140 150 220 230 240 250 260 270 pF1KE3 HRVITFANQDDYISFRHHVYKKTDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 HRVITFANQDDYISFRHHVYKKTDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWR 160 170 180 190 200 210 280 290 pF1KE3 WHPYTNTARKRVFLSTE ::::::::::::::::: NP_001 WHPYTNTARKRVFLSTE 220 230 >>NP_001307238 (OMIM: 612981) U3 small nucleolar ribonuc (206 aa) initn: 1388 init1: 1388 opt: 1388 Z-score: 1455.8 bits: 276.8 E(85289): 2.4e-74 Smith-Waterman score: 1388; 100.0% identity (100.0% similar) in 206 aa overlap (86-291:1-206) 60 70 80 90 100 110 pF1KE3 SLEFDDAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMN :::::::::::::::::::::::::::::: NP_001 MITTSRDPSSRLKMFAKELKLVFPGAQRMN 10 20 30 120 130 140 150 160 170 pF1KE3 RGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD 40 50 60 70 80 90 180 190 200 210 220 230 pF1KE3 LGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYK 100 110 120 130 140 150 240 250 260 270 280 290 pF1KE3 KTDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KTDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE 160 170 180 190 200 >>NP_001307239 (OMIM: 612981) U3 small nucleolar ribonuc (206 aa) initn: 1388 init1: 1388 opt: 1388 Z-score: 1455.8 bits: 276.8 E(85289): 2.4e-74 Smith-Waterman score: 1388; 100.0% identity (100.0% similar) in 206 aa overlap (86-291:1-206) 60 70 80 90 100 110 pF1KE3 SLEFDDAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMN :::::::::::::::::::::::::::::: NP_001 MITTSRDPSSRLKMFAKELKLVFPGAQRMN 10 20 30 120 130 140 150 160 170 pF1KE3 RGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD 40 50 60 70 80 90 180 190 200 210 220 230 pF1KE3 LGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYK 100 110 120 130 140 150 240 250 260 270 280 290 pF1KE3 KTDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KTDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE 160 170 180 190 200 >>NP_001307240 (OMIM: 612981) U3 small nucleolar ribonuc (203 aa) initn: 1271 init1: 1271 opt: 1355 Z-score: 1421.7 bits: 270.5 E(85289): 1.9e-72 Smith-Waterman score: 1355; 98.5% identity (98.5% similar) in 206 aa overlap (86-291:1-203) 60 70 80 90 100 110 pF1KE3 SLEFDDAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMN ::::::::::::::::: :::::::::: NP_001 MITTSRDPSSRLKMFAK---LVFPGAQRMN 10 20 120 130 140 150 160 170 pF1KE3 RGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD 30 40 50 60 70 80 180 190 200 210 220 230 pF1KE3 LGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYK 90 100 110 120 130 140 240 250 260 270 280 290 pF1KE3 KTDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KTDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE 150 160 170 180 190 200 >>NP_001307234 (OMIM: 612981) U3 small nucleolar ribonuc (273 aa) initn: 1288 init1: 1288 opt: 1303 Z-score: 1365.7 bits: 260.5 E(85289): 2.5e-69 Smith-Waterman score: 1782; 93.8% identity (93.8% similar) in 291 aa overlap (1-291:1-273) 10 20 30 40 50 60 pF1KE3 MLRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MLRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 DAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE :::::::::::::::::::::::: :::::::::::::::::: NP_001 DAGGEGVTSHVDDEYRWAGVEDPK------------------ELKLVFPGAQRMNRGRHE 70 80 90 100 130 140 150 160 170 180 pF1KE3 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMS 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE3 EAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDHR 170 180 190 200 210 220 250 260 270 280 290 pF1KE3 NVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE ::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE 230 240 250 260 270 291 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 08:42:01 2016 done: Sun Nov 6 08:42:02 2016 Total Scan time: 7.210 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]