Result of FASTA (omim) for
pFN21AB3507
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3507, 373 aa
1>>>pF1KB3507 373 - 373 aa - 373 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4151+/-0.000368; mu= 16.5760+/- 0.023
mean_var=73.9788+/-15.221, 0's: 0 Z-trim(114.1): 5 B-trim: 290 in 1/55
Lambda= 0.149115
statistics sampled from 23725 (23729) to 23725 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.278), width: 16
Scan time: 7.800
The best scores are: opt bits E(85289)
NP_001028228 (OMIM: 138290,610015) glutamine synth ( 373) 2630 575.1 9e-164
NP_001028216 (OMIM: 138290,610015) glutamine synth ( 373) 2630 575.1 9e-164
XP_006711341 (OMIM: 138290,610015) PREDICTED: glut ( 373) 2630 575.1 9e-164
NP_002056 (OMIM: 138290,610015) glutamine syntheta ( 373) 2630 575.1 9e-164
>>NP_001028228 (OMIM: 138290,610015) glutamine synthetas (373 aa)
initn: 2630 init1: 2630 opt: 2630 Z-score: 3061.2 bits: 575.1 E(85289): 9e-164
Smith-Waterman score: 2630; 100.0% identity (100.0% similar) in 373 aa overlap (1-373:1-373)
10 20 30 40 50 60
pF1KB3 MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 NFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 RACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 TGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL
310 320 330 340 350 360
370
pF1KB3 LNETGDEPFQYKN
:::::::::::::
NP_001 LNETGDEPFQYKN
370
>>NP_001028216 (OMIM: 138290,610015) glutamine synthetas (373 aa)
initn: 2630 init1: 2630 opt: 2630 Z-score: 3061.2 bits: 575.1 E(85289): 9e-164
Smith-Waterman score: 2630; 100.0% identity (100.0% similar) in 373 aa overlap (1-373:1-373)
10 20 30 40 50 60
pF1KB3 MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 NFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 RACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 TGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL
310 320 330 340 350 360
370
pF1KB3 LNETGDEPFQYKN
:::::::::::::
NP_001 LNETGDEPFQYKN
370
>>XP_006711341 (OMIM: 138290,610015) PREDICTED: glutamin (373 aa)
initn: 2630 init1: 2630 opt: 2630 Z-score: 3061.2 bits: 575.1 E(85289): 9e-164
Smith-Waterman score: 2630; 100.0% identity (100.0% similar) in 373 aa overlap (1-373:1-373)
10 20 30 40 50 60
pF1KB3 MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 NFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 RACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 TGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL
310 320 330 340 350 360
370
pF1KB3 LNETGDEPFQYKN
:::::::::::::
XP_006 LNETGDEPFQYKN
370
>>NP_002056 (OMIM: 138290,610015) glutamine synthetase [ (373 aa)
initn: 2630 init1: 2630 opt: 2630 Z-score: 3061.2 bits: 575.1 E(85289): 9e-164
Smith-Waterman score: 2630; 100.0% identity (100.0% similar) in 373 aa overlap (1-373:1-373)
10 20 30 40 50 60
pF1KB3 MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 NFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 NFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 RACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 TGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL
310 320 330 340 350 360
370
pF1KB3 LNETGDEPFQYKN
:::::::::::::
NP_002 LNETGDEPFQYKN
370
373 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 12:10:22 2016 done: Sat Nov 5 12:10:23 2016
Total Scan time: 7.800 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]