FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1515, 260 aa 1>>>pF1KE1515 260 - 260 aa - 260 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2330+/-0.00039; mu= 15.1473+/- 0.024 mean_var=75.3794+/-15.363, 0's: 0 Z-trim(113.5): 115 B-trim: 363 in 3/49 Lambda= 0.147723 statistics sampled from 22766 (22893) to 22766 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.268), width: 16 Scan time: 6.650 The best scores are: opt bits E(85289) NP_001229454 (OMIM: 142880) HLA class II histocomp ( 260) 1714 374.6 9.7e-104 NP_291032 (OMIM: 142880) HLA class II histocompati ( 260) 1714 374.6 9.7e-104 NP_001229453 (OMIM: 142880) HLA class II histocomp ( 260) 1714 374.6 9.7e-104 NP_061984 (OMIM: 142860) HLA class II histocompati ( 254) 1022 227.1 2.4e-59 NP_002113 (OMIM: 146880,212750) HLA class II histo ( 255) 979 218.0 1.4e-56 NP_064440 (OMIM: 613503) HLA class II histocompati ( 255) 958 213.5 3e-55 NP_002110 (OMIM: 142930) HLA class II histocompati ( 250) 938 209.2 5.7e-54 XP_006715142 (OMIM: 146880,212750) PREDICTED: HLA ( 206) 790 177.6 1.5e-44 NP_006111 (OMIM: 142855) HLA class II histocompati ( 261) 361 86.3 6.2e-17 NP_002112 (OMIM: 142858) HLA class II histocompati ( 258) 289 70.9 2.5e-12 NP_001287719 (OMIM: 615161) HLA class II histocomp ( 264) 268 66.5 5.7e-11 XP_005249108 (OMIM: 615161) PREDICTED: HLA class I ( 275) 268 66.5 5.9e-11 NP_001230890 (OMIM: 123400,126200,212750,604305) H ( 269) 258 64.3 2.6e-10 NP_001230894 (OMIM: 126200,142857,180300,181000) m ( 266) 255 63.7 3.9e-10 XP_011512862 (OMIM: 615161) PREDICTED: HLA class I ( 256) 253 63.3 5.1e-10 NP_002116 (OMIM: 604776) major histocompatibility ( 266) 250 62.6 8.3e-10 XP_011546040 (OMIM: 126200,142857,180300,181000) P ( 266) 250 62.6 8.3e-10 XP_011512864 (OMIM: 604776) PREDICTED: major histo ( 276) 250 62.6 8.5e-10 NP_002109 (OMIM: 142856) HLA class II histocompati ( 263) 248 62.2 1.1e-09 NP_002115 (OMIM: 126200,142857,180300,181000) majo ( 266) 247 62.0 1.3e-09 NP_002114 (OMIM: 123400,126200,212750,604305) HLA ( 261) 241 60.7 3.1e-09 NP_001230891 (OMIM: 123400,126200,212750,604305) H ( 261) 241 60.7 3.1e-09 NP_072049 (OMIM: 612735) major histocompatibility ( 266) 238 60.1 4.9e-09 NP_004039 (OMIM: 105200,109700,241600) beta-2-micr ( 119) 228 57.7 1.1e-08 XP_005254606 (OMIM: 105200,109700,241600) PREDICTE ( 122) 226 57.3 1.6e-08 NP_001185787 (OMIM: 615161) HLA class II histocomp ( 227) 229 58.1 1.6e-08 NP_002111 (OMIM: 600629) HLA class II histocompati ( 273) 229 58.2 1.9e-08 XP_016866304 (OMIM: 143110) PREDICTED: HLA class I ( 228) 226 57.5 2.5e-08 XP_016866303 (OMIM: 143110) PREDICTED: HLA class I ( 324) 226 57.6 3.3e-08 NP_061823 (OMIM: 143110) HLA class I histocompatib ( 346) 226 57.6 3.5e-08 XP_016866302 (OMIM: 143110) PREDICTED: HLA class I ( 388) 226 57.6 3.8e-08 XP_016866301 (OMIM: 143110) PREDICTED: HLA class I ( 420) 226 57.7 4.1e-08 XP_016866299 (OMIM: 143110) PREDICTED: HLA class I ( 435) 226 57.7 4.2e-08 NP_001091949 (OMIM: 143110) HLA class I histocompa ( 442) 226 57.7 4.2e-08 XP_011512863 (OMIM: 615161) PREDICTED: HLA class I ( 219) 222 56.6 4.4e-08 XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343) 217 55.7 1.3e-07 XP_016866300 (OMIM: 143110) PREDICTED: HLA class I ( 431) 217 55.8 1.6e-07 XP_016866307 (OMIM: 142871,600807) PREDICTED: HLA ( 246) 212 54.5 2.1e-07 XP_016866306 (OMIM: 142871,600807) PREDICTED: HLA ( 246) 212 54.5 2.1e-07 XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254) 206 53.2 5.3e-07 NP_001181928 (OMIM: 600764) major histocompatibili ( 296) 206 53.3 6e-07 NP_001522 (OMIM: 600764) major histocompatibility ( 341) 206 53.3 6.6e-07 NP_620573 (OMIM: 104300,176100,176200,235200,61263 ( 256) 204 52.8 7.2e-07 NP_001129491 (OMIM: 601437) IgG receptor FcRn larg ( 365) 199 51.9 2e-06 NP_004098 (OMIM: 601437) IgG receptor FcRn large s ( 365) 199 51.9 2e-06 NP_001229687 (OMIM: 142800,608579) HLA class I his ( 365) 198 51.7 2.3e-06 NP_620577 (OMIM: 104300,176100,176200,235200,61263 ( 246) 194 50.7 3e-06 NP_002107 (OMIM: 142800,608579) HLA class I histoc ( 365) 196 51.2 3.1e-06 NP_620575 (OMIM: 104300,176100,176200,235200,61263 ( 334) 194 50.8 3.9e-06 NP_620579 (OMIM: 104300,176100,176200,235200,61263 ( 168) 190 49.7 4.1e-06 >>NP_001229454 (OMIM: 142880) HLA class II histocompatib (260 aa) initn: 1755 init1: 1714 opt: 1714 Z-score: 1983.5 bits: 374.6 E(85289): 9.7e-104 Smith-Waterman score: 1714; 97.3% identity (98.8% similar) in 260 aa overlap (1-260:1-260) 10 20 30 40 50 60 pF1KE1 MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQTHRPTGEFMFEFDED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQTHRPTGEFMFEFDED 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 EQFYVDLDKKETVWHLEEFGRAFSFEAQGGLANIAILNNNLNTLIQRSNHTQAANDPPEV :.::::::::::::::::::.::::::::::::::::::::::::::::::::.:::::: NP_001 EMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPEV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 TVFPKEPVELGQPNTLICHIDRFFPPVLNVTWLCNGEPVTEGVAESLFLPRTDYSFHKFH :::::::::::::::::::::.::::::::::::::: :::::::::::::::::::::: NP_001 TVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKFH 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 YLTFVPSAEDVYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIVG :::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIVG 190 200 210 220 230 240 250 260 pF1KE1 TVLIIKSLRSGHDPRAQGPL :::::::::::::::::: : NP_001 TVLIIKSLRSGHDPRAQGTL 250 260 >>NP_291032 (OMIM: 142880) HLA class II histocompatibili (260 aa) initn: 1755 init1: 1714 opt: 1714 Z-score: 1983.5 bits: 374.6 E(85289): 9.7e-104 Smith-Waterman score: 1714; 97.3% identity (98.8% similar) in 260 aa overlap (1-260:1-260) 10 20 30 40 50 60 pF1KE1 MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQTHRPTGEFMFEFDED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_291 MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQTHRPTGEFMFEFDED 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 EQFYVDLDKKETVWHLEEFGRAFSFEAQGGLANIAILNNNLNTLIQRSNHTQAANDPPEV :.::::::::::::::::::.::::::::::::::::::::::::::::::::.:::::: NP_291 EMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPEV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 TVFPKEPVELGQPNTLICHIDRFFPPVLNVTWLCNGEPVTEGVAESLFLPRTDYSFHKFH :::::::::::::::::::::.::::::::::::::: :::::::::::::::::::::: NP_291 TVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKFH 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 YLTFVPSAEDVYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIVG :::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::: NP_291 YLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIVG 190 200 210 220 230 240 250 260 pF1KE1 TVLIIKSLRSGHDPRAQGPL :::::::::::::::::: : NP_291 TVLIIKSLRSGHDPRAQGTL 250 260 >>NP_001229453 (OMIM: 142880) HLA class II histocompatib (260 aa) initn: 1755 init1: 1714 opt: 1714 Z-score: 1983.5 bits: 374.6 E(85289): 9.7e-104 Smith-Waterman score: 1714; 97.3% identity (98.8% similar) in 260 aa overlap (1-260:1-260) 10 20 30 40 50 60 pF1KE1 MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQTHRPTGEFMFEFDED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQTHRPTGEFMFEFDED 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 EQFYVDLDKKETVWHLEEFGRAFSFEAQGGLANIAILNNNLNTLIQRSNHTQAANDPPEV :.::::::::::::::::::.::::::::::::::::::::::::::::::::.:::::: NP_001 EMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPEV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 TVFPKEPVELGQPNTLICHIDRFFPPVLNVTWLCNGEPVTEGVAESLFLPRTDYSFHKFH :::::::::::::::::::::.::::::::::::::: :::::::::::::::::::::: NP_001 TVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKFH 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 YLTFVPSAEDVYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIVG :::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIVG 190 200 210 220 230 240 250 260 pF1KE1 TVLIIKSLRSGHDPRAQGPL :::::::::::::::::: : NP_001 TVLIIKSLRSGHDPRAQGTL 250 260 >>NP_061984 (OMIM: 142860) HLA class II histocompatibili (254 aa) initn: 1008 init1: 1008 opt: 1022 Z-score: 1186.6 bits: 227.1 E(85289): 2.4e-59 Smith-Waterman score: 1022; 60.7% identity (81.4% similar) in 247 aa overlap (14-260:8-254) 10 20 30 40 50 60 pF1KE1 MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQTHRPTGEFMFEFDED .: . .: :.: . . ::: .:: : : . .:::::.:: : NP_061 MAISGVPVLGFFIIAVLMSAQESWAIKEEHVIIQAEFYLNPDQSGEFMFDFDGD 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 EQFYVDLDKKETVWHLEEFGRAFSFEAQGGLANIAILNNNLNTLIQRSNHTQAANDPPEV : :.::. ::::::.:::::: ::::::.:::::. . ::. . .:::.: .: :::: NP_061 EIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEV 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 TVFPKEPVELGQPNTLICHIDRFFPPVLNVTWLCNGEPVTEGVAESLFLPRTDYSFHKFH ::. . :::: .::.::: ::.: :::.::::: ::.::: ::.:..:::: :. :.::: NP_061 TVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFH 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE1 YLTFVPSAEDVYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIVG :: :.::.::::::::::::::.::::::: . : .:::::.:.:::::..::::::.: NP_061 YLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIG 180 190 200 210 220 230 250 260 pF1KE1 TVLIIKSLRSGHDPRAQGPL :..:::.::... . .::: NP_061 TIFIIKGLRKSNAAERRGPL 240 250 >>NP_002113 (OMIM: 146880,212750) HLA class II histocomp (255 aa) initn: 966 init1: 929 opt: 979 Z-score: 1137.0 bits: 218.0 E(85289): 1.4e-56 Smith-Waterman score: 979; 56.5% identity (79.6% similar) in 255 aa overlap (7-260:1-255) 10 20 30 40 50 pF1KE1 MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAA-FVQTHRPTGEFMFEFDE :. .:..: ::.:. ..: :. : ::::.. .. . : . :.:.. ::: NP_002 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDG 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 DEQFYVDLDKKETVWHLEEFGRAFSFEAQGGLANIAILNNNLNTLIQRSNHTQAANDPPE ::::::::..:::.:. ::.. .:. ::.: :.:. ..::: .:.: : : :.:. :: NP_002 DEQFYVDLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPE 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 VTVFPKEPVELGQPNTLICHIDRFFPPVLNVTWLCNGEPVTEGVAESLFLPRTDYSFHKF :::: : :: ::::::::: .: .::::.:.::: ::. :::::.:. :: ..:.:: :. NP_002 VTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKI 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 HYLTFVPSAEDVYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIV ::::.:::...:::.::::::::::::::: . : : : ::::.::::: .::.::.: NP_002 SYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVV 180 190 200 210 220 230 240 250 260 pF1KE1 GTVLIIKSLRSGHDPRAQGPL :::.::..::: : :::: NP_002 GTVFIIQGLRSVGASRHQGPL 240 250 >>NP_064440 (OMIM: 613503) HLA class II histocompatibili (255 aa) initn: 921 init1: 851 opt: 958 Z-score: 1112.8 bits: 213.5 E(85289): 3e-55 Smith-Waterman score: 958; 55.3% identity (80.4% similar) in 255 aa overlap (7-260:1-255) 10 20 30 40 50 pF1KE1 MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAA-FVQTHRPTGEFMFEFDE :. .:..: ::.:. ..: :. : ::::..:.. : :.: :.:.. ::: NP_064 MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDG 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 DEQFYVDLDKKETVWHLEEFGRAFSFEAQGGLANIAILNNNLNTLIQRSNHTQAANDPPE ::.:::::. :::::.: :.. .::. :..: :.:. ...:. ....:: : :.:. :: NP_064 DEEFYVDLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPE 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 VTVFPKEPVELGQPNTLICHIDRFFPPVLNVTWLCNGEPVTEGVAESLFLPRTDYSFHKF :::: : :: ::::::::: .: .::::.:.::: ::. :::::.:. :: ..:.:: :. NP_064 VTVFSKFPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKI 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 HYLTFVPSAEDVYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIV ::::.:::...:::.:::::::.::::::: . : : : :::..::::: .::.::.: NP_064 SYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVV 180 190 200 210 220 230 240 250 260 pF1KE1 GTVLIIKSLRSGHDPRAQGPL :::.::..::: : :: : NP_064 GTVFIIQGLRSVGASRHQGLL 240 250 >>NP_002110 (OMIM: 142930) HLA class II histocompatibili (250 aa) initn: 933 init1: 877 opt: 938 Z-score: 1089.9 bits: 209.2 E(85289): 5.7e-54 Smith-Waterman score: 938; 56.9% identity (78.2% similar) in 248 aa overlap (10-255:3-250) 10 20 30 40 50 pF1KE1 MRPEDRMFHIRA-VILRALSLAFLLSLRGAGAIKADHVSTYA-AFVQTHRPTGEFMFEFD .:: ..: .: ::: . ::: ::::...:. :: :.. .:.: ::: NP_002 MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFD 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 EDEQFYVDLDKKETVWHLEEFGRAFSFEAQGGLANIAILNNNLNTLIQRSNHTQAANDPP :.. : ::: :.:.::.: ::: :. :::::.:: .. .:. :..:::...: : :: NP_002 EEQLFSVDLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPP 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 EVTVFPKEPVELGQPNTLICHIDRFFPPVLNVTWLCNGEPVTEGVAESLFLPRTDYSFHK .:::.:: ::::::: ::: .: .::::.:.::: ::. ::::::.. : . :. :.: NP_002 RVTVLPKSRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRK 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 FHYLTFVPSAEDVYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGII :::: :::::::::::.::::::: :::.::: : :: :.. ::..:::::..::::.. NP_002 FHYLPFVPSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFL 180 190 200 210 220 230 240 250 260 pF1KE1 VGTVLIIKSLRSGHDPRAQGPL ::::::: . . :: NP_002 VGTVLIIMGTYVSSVPR 240 250 >>XP_006715142 (OMIM: 146880,212750) PREDICTED: HLA clas (206 aa) initn: 777 init1: 740 opt: 790 Z-score: 920.6 bits: 177.6 E(85289): 1.5e-44 Smith-Waterman score: 790; 55.4% identity (80.4% similar) in 204 aa overlap (7-209:1-204) 10 20 30 40 50 pF1KE1 MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAA-FVQTHRPTGEFMFEFDE :. .:..: ::.:. ..: :. : ::::.. .. . : . :.:.. ::: XP_006 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDG 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 DEQFYVDLDKKETVWHLEEFGRAFSFEAQGGLANIAILNNNLNTLIQRSNHTQAANDPPE ::::::::..:::.:. ::.. .:. ::.: :.:. ..::: .:.: : : :.:. :: XP_006 DEQFYVDLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPE 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 VTVFPKEPVELGQPNTLICHIDRFFPPVLNVTWLCNGEPVTEGVAESLFLPRTDYSFHKF :::: : :: ::::::::: .: .::::.:.::: ::. :::::.:. :: ..:.:: :. XP_006 VTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKI 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 HYLTFVPSAEDVYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIV ::::.:::...:::.:::::::::::::: XP_006 SYLTFLPSADEIYDCKVEHWGLDQPLLKHWVE 180 190 200 >>NP_006111 (OMIM: 142855) HLA class II histocompatibili (261 aa) initn: 353 init1: 147 opt: 361 Z-score: 425.1 bits: 86.3 E(85289): 6.2e-17 Smith-Waterman score: 361; 31.0% identity (59.7% similar) in 216 aa overlap (35-245:41-252) 10 20 30 40 50 60 pF1KE1 DRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAAFVQTHRPTGEFMFEFDEDEQFY .:. .... : :. . .:::. :. NP_006 LLQMLPLLWLLPHSWAVPEAPTPMWPDDLQNHTFLHTVYCQDGSPSVGLSEAYDEDQLFF 20 30 40 50 60 70 70 80 90 100 110 pF1KE1 VDLDKKETVWHLEEFGRAFSFEAQGGLANIAILNNNLNTLIQRSNHTQAANDP-----PE :.... : .: :: : . :: : . .. . .::. . .. : : NP_006 FDFSQNTRVPRLPEF--ADWAQEQGDAPAILFDKEFCEWMIQQIGPKLDGKIPVSRGFPI 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 VTVFPKEPVELGQPNTLICHIDRFFPPVLNVTWLCNGEPVTEGVAESLFLPRTDYSFHKF . :: .:.:.:.::::.: .. .:::.:.:.: .. :: :: . .. ::. : NP_006 AEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNWQHHSVPV-EGFGPTFVSAVDGLSFQAF 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE1 HYLTFVPSAEDVYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIV ::.:.: :...: : : . .: .. . . :.:::.... ::..:::: NP_006 SYLNFTPEPSDIFSCIVTHEIDRYTAIAYWVPRNALP-SDLLENVLCGVAFGLGVLGIIV 190 200 210 220 230 240 240 250 260 pF1KE1 GTVLIIKSLRSGHDPRAQGPL : :::: NP_006 GIVLIIYFRKPCSGD 250 260 >>NP_002112 (OMIM: 142858) HLA class II histocompatibili (258 aa) initn: 250 init1: 228 opt: 289 Z-score: 342.2 bits: 70.9 E(85289): 2.5e-12 Smith-Waterman score: 289; 28.0% identity (55.6% similar) in 243 aa overlap (11-243:11-246) 10 20 30 40 50 pF1KE1 MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHV----STYAAFVQTHRPTGEFMFE :.: : :: ...: :. . : ... . :: :.: ..... NP_002 MMVLQVSAAPRTVALTALLMVLLTSVVQGRATPENYLFQGRQECYAFNGTQRFLERYIYN 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 FDEDEQFYVDLDKKETVWHLEEFGRAFSFEAQGGLANIAILNNNLNTLIQRSNH------ .: .: :. . ..: :.:: . : .. .: . . . : :. NP_002 REEFARFDSDVGEFRAV---TELGRP-AAEYWNSQKDILEEKRAVPDRMCRHNYELGGPM 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 TQAANDPPEVTVFPKEPVELGQPNTLICHIDRFFPPVLNVTWLCNGEPVTEGVAESLFLP : :.:.: :.. : . : :.::. :.: ..: :. ::. : ::. . .. NP_002 TLQRRVQPRVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFLNGQEETAGVVSTNLIR 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 RTDYSFHKFHYLTFVPSAEDVYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGL :..:. . .: ..:. ::: :.::: .::.:. .:.:: ..:. : :. NP_002 NGDWTFQILVMLEMTPQQGDVYTCQVEHTSLDSPVTVEWKAQSD---SARSKTLTGAGGF 180 190 200 210 220 230 240 250 260 pF1KE1 VLGLVGIIVGTVLIIKSLRSGHDPRAQGPL ::::. :: . NP_002 VLGLIICGVGIFMHRRSKKVQRGSA 240 250 260 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:59:43 2016 done: Mon Nov 7 01:59:44 2016 Total Scan time: 6.650 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]