FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5221, 259 aa 1>>>pF1KE5221 259 - 259 aa - 259 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5547+/-0.000827; mu= 12.5362+/- 0.049 mean_var=57.5308+/-11.628, 0's: 0 Z-trim(106.2): 21 B-trim: 41 in 1/48 Lambda= 0.169092 statistics sampled from 8844 (8850) to 8844 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.654), E-opt: 0.2 (0.272), width: 16 Scan time: 1.890 The best scores are: opt bits E(32554) CCDS3870.1 SRD5A1 gene_id:6715|Hs108|chr5 ( 259) 1813 450.4 5.5e-127 CCDS74503.1 SRD5A2 gene_id:6716|Hs108|chr2 ( 254) 806 204.8 4.9e-53 >>CCDS3870.1 SRD5A1 gene_id:6715|Hs108|chr5 (259 aa) initn: 1813 init1: 1813 opt: 1813 Z-score: 2393.2 bits: 450.4 E(32554): 5.5e-127 Smith-Waterman score: 1813; 100.0% identity (100.0% similar) in 259 aa overlap (1-259:1-259) 10 20 30 40 50 60 pF1KE5 MATATGVAEERLLAALAYLQCAVGCAVFARNRQTNSVYGRHALPSHRLRVPARAAWVVQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS38 MATATGVAEERLLAALAYLQCAVGCAVFARNRQTNSVYGRHALPSHRLRVPARAAWVVQE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 LPSLALPLYQYASESAPRLRSAPNCILLAMFLVHYGHRCLIYPFLMRGGKPMPLLACTMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS38 LPSLALPLYQYASESAPRLRSAPNCILLAMFLVHYGHRCLIYPFLMRGGKPMPLLACTMA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 IMFCTCNGYLQSRYLSHCAVYADDWVTDPRFLIGFGLWLTGMLINIHSDHILRNLRKPGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS38 IMFCTCNGYLQSRYLSHCAVYADDWVTDPRFLIGFGLWLTGMLINIHSDHILRNLRKPGD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 TGYKIPRGGLFEYVTAANYFGEIMEWCGYALASWSVQGAAFAFFTFCFLSGRAKEHHEWY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS38 TGYKIPRGGLFEYVTAANYFGEIMEWCGYALASWSVQGAAFAFFTFCFLSGRAKEHHEWY 190 200 210 220 230 240 250 pF1KE5 LRKFEEYPKFRKIIIPFLF ::::::::::::::::::: CCDS38 LRKFEEYPKFRKIIIPFLF 250 >>CCDS74503.1 SRD5A2 gene_id:6716|Hs108|chr2 (254 aa) initn: 772 init1: 608 opt: 806 Z-score: 1065.7 bits: 204.8 E(32554): 4.9e-53 Smith-Waterman score: 806; 52.7% identity (74.3% similar) in 226 aa overlap (36-259:31-254) 10 20 30 40 50 60 pF1KE5 GVAEERLLAALAYLQCAVGCAVFARNRQTNSVYGRH--ALPSHRLRVPARAAWVVQELPS : ::.: .: :.:::::: .::::: CCDS74 MQVQCQQSPVLAGSATLVALGALALYVAKPSGYGKHTESLKPAATRLPARAAWFLQELPS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 LALPLYQYASESAPRLRSAPNCILLAMFLVHYGHRCLIYPFLMRGGKPMPLLACTMAIMF .:.: : . : . :. .::..: .:: :: ..: .: :: .:.: . . : CCDS74 FAVPAGILARQPLS-LFGPPGTVLLGLFCLHYFHRTFVYSLLNRG-RPYPAILILRGTAF 70 80 90 100 110 130 140 150 160 170 180 pF1KE5 CTCNGYLQSRYLSHCAVYADDWVTDPRFLIGFGLWLTGMLINIHSDHILRNLRKPGDTGY :: :: ::. :: .:: : : : :: :: .: :.. :: ::::::.:::.:::::. .: CCDS74 CTGNGVLQGYYLIYCAEYPDGWYTDIRFSLGVFLFILGMGINIHSDYILRQLRKPGEISY 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE5 KIPRGGLFEYVTAANYFGEIMEWCGYALASWSVQGAAFAFFTFCFLSGRAKEHHEWYLRK .::.:::: ::..::..:::.:: :::::.::. . :::::..:::. :: .::..::. CCDS74 RIPQGGLFTYVSGANFLGEIIEWIGYALATWSLPALAFAFFSLCFLGLRAFHHHRFYLKM 180 190 200 210 220 230 250 pF1KE5 FEEYPKFRKIIIPFLF ::.::: :: .:::.: CCDS74 FEDYPKSRKALIPFIF 240 250 259 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:38:23 2016 done: Mon Nov 7 22:38:23 2016 Total Scan time: 1.890 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]