Result of FASTA (omim) for pFN21AE1575
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1575, 365 aa
  1>>>pF1KE1575 365 - 365 aa - 365 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0478+/-0.000362; mu= 19.0366+/- 0.022
 mean_var=82.6570+/-17.081, 0's: 0 Z-trim(115.2): 136  B-trim: 1498 in 2/54
 Lambda= 0.141070
 statistics sampled from 25339 (25503) to 25339 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.299), width:  16
 Scan time:  7.980

The best scores are:                                      opt bits E(85289)
NP_002107 (OMIM: 142800,608579) HLA class I histoc ( 365) 2276 472.9 5.1e-133
NP_001229687 (OMIM: 142800,608579) HLA class I his ( 365) 2273 472.3 7.8e-133
XP_016885777 (OMIM: 142800,608579) PREDICTED: HLA  ( 362) 2262 470.0 3.6e-132
XP_005275388 (OMIM: 142800,608579) PREDICTED: HLA  ( 391) 2257 469.0 7.8e-132
NP_005505 (OMIM: 106300,142830,608579) major histo ( 362) 2095 436.0 6.2e-122
NP_001229971 (OMIM: 142840,177900,609423) HLA clas ( 366) 2014 419.6 5.7e-117
NP_002108 (OMIM: 142840,177900,609423) HLA class I ( 366) 1997 416.1 6.3e-116
XP_016866302 (OMIM: 143110) PREDICTED: HLA class I ( 388) 1904 397.2 3.3e-110
XP_016866301 (OMIM: 143110) PREDICTED: HLA class I ( 420) 1904 397.2 3.5e-110
XP_016866299 (OMIM: 143110) PREDICTED: HLA class I ( 435) 1904 397.2 3.6e-110
NP_001091949 (OMIM: 143110) HLA class I histocompa ( 442) 1904 397.2 3.6e-110
NP_061823 (OMIM: 143110) HLA class I histocompatib ( 346) 1895 395.3 1.1e-109
NP_005507 (OMIM: 143010) HLA class I histocompatib ( 358) 1870 390.2 3.7e-108
NP_002118 (OMIM: 142871,600807) HLA class I histoc ( 338) 1866 389.4 6.3e-108
XP_016866305 (OMIM: 142871,600807) PREDICTED: HLA  ( 343) 1866 389.4 6.4e-108
XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343) 1842 384.5 1.9e-106
XP_016866300 (OMIM: 143110) PREDICTED: HLA class I ( 431) 1840 384.2 2.9e-106
XP_016866298 (OMIM: 143010) PREDICTED: HLA class I ( 359) 1830 382.1 1.1e-105
XP_011512859 (OMIM: 106300,142830,608579) PREDICTE ( 323) 1795 374.9 1.4e-103
XP_016866297 (OMIM: 143010) PREDICTED: HLA class I ( 399) 1782 372.4  1e-102
XP_016866296 (OMIM: 143010) PREDICTED: HLA class I ( 399) 1782 372.4  1e-102
XP_016866303 (OMIM: 143110) PREDICTED: HLA class I ( 324) 1303 274.8 1.9e-73
XP_016866304 (OMIM: 143110) PREDICTED: HLA class I ( 228) 1294 272.8 5.3e-73
NP_001091948 (OMIM: 143110) HLA class I histocompa ( 254) 1045 222.2   1e-57
NP_001522 (OMIM: 600764) major histocompatibility  ( 341)  816 175.7 1.4e-43
XP_016866306 (OMIM: 142871,600807) PREDICTED: HLA  ( 246)  795 171.3 2.1e-42
XP_016866307 (OMIM: 142871,600807) PREDICTED: HLA  ( 246)  795 171.3 2.1e-42
XP_011512845 (OMIM: 104300,176100,176200,235200,61 ( 348)  737 159.6 9.5e-39
NP_000401 (OMIM: 104300,176100,176200,235200,61263 ( 348)  737 159.6 9.5e-39
NP_001287678 (OMIM: 104300,176100,176200,235200,61 ( 337)  730 158.2 2.5e-38
NP_620578 (OMIM: 104300,176100,176200,235200,61263 ( 325)  688 149.6 9.1e-36
NP_001176 (OMIM: 194460) zinc-alpha-2-glycoprotein ( 298)  675 147.0 5.4e-35
XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254)  593 130.2 5.1e-30
NP_620576 (OMIM: 104300,176100,176200,235200,61263 ( 260)  571 125.7 1.1e-28
NP_001181929 (OMIM: 600764) major histocompatibili ( 249)  543 120.0 5.8e-27
XP_006711349 (OMIM: 600764) PREDICTED: major histo ( 312)  533 118.1 2.8e-26
NP_001181964 (OMIM: 600764) major histocompatibili ( 214)  530 117.3 3.2e-26
NP_001170990 (OMIM: 600169) MHC class I polypeptid ( 332)  514 114.2 4.2e-25
NP_000238 (OMIM: 600169) MHC class I polypeptide-r ( 383)  498 111.0 4.5e-24
NP_005922 (OMIM: 602436) MHC class I polypeptide-r ( 383)  482 107.8 4.3e-23
NP_001276089 (OMIM: 602436) MHC class I polypeptid ( 351)  454 102.0 2.1e-21
NP_001181928 (OMIM: 600764) major histocompatibili ( 296)  452 101.6 2.5e-21
NP_001129491 (OMIM: 601437) IgG receptor FcRn larg ( 365)  423 95.8 1.7e-19
NP_004098 (OMIM: 601437) IgG receptor FcRn large s ( 365)  423 95.8 1.7e-19
NP_620579 (OMIM: 104300,176100,176200,235200,61263 ( 168)  380 86.7 4.2e-17
NP_001297142 (OMIM: 600764) major histocompatibili ( 178)  380 86.7 4.4e-17
NP_620573 (OMIM: 104300,176100,176200,235200,61263 ( 256)  380 86.9 5.7e-17
NP_001276082 (OMIM: 600169) MHC class I polypeptid ( 235)  374 85.6 1.3e-16
NP_001276081 (OMIM: 600169) MHC class I polypeptid ( 235)  374 85.6 1.3e-16
NP_620577 (OMIM: 104300,176100,176200,235200,61263 ( 246)  369 84.6 2.6e-16


>>NP_002107 (OMIM: 142800,608579) HLA class I histocompa  (365 aa)
 initn: 2276 init1: 2276 opt: 2276  Z-score: 2509.1  bits: 472.9 E(85289): 5.1e-133
Smith-Waterman score: 2276; 91.2% identity (96.2% similar) in 365 aa overlap (1-365:1-365)

               10        20        30        40        50        60
pF1KE1 MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRF
       :::::::::.::::::::::::::::::::::.:::::::::::::::::::::::::::
NP_002 MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DSDAASQRMEPRAPWIEQEGPEYWDRNTRNVKAHSQTDRESLRIALRYYNQSEDGSHTIQ
       :::::::::::::::::::::::::..::::::.::::: .:     :::::: ::::::
NP_002 DSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RMYGCDVGPDGRFLRGYQQDAYDGKDYIALNEDLRSWTAADMAAQITQRKWETAHEAEQW
        ::::::: ::::::::.:::::::::::::::::::::::::::::.::::.:::::: 
NP_002 IMYGCDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 RAYLEGRCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLT
       ::::.: :::::::::::::::::::: :::::::: .::::::::::::.:::::::::
NP_002 RAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP
       :::::::::::::::::::::::::::::.::::::.:::::::::::::::::::::: 
NP_002 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 SSQPTIPIVGIIAGLVLFGAVIAGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQGSDMSL
       :::::::::::::::::.::::.:::::::::::::::::::::.::::::::::::.::
NP_002 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL
              310       320       330       340       350       360

            
pF1KE1 TACKV
       :::::
NP_002 TACKV
            

>>NP_001229687 (OMIM: 142800,608579) HLA class I histoco  (365 aa)
 initn: 2273 init1: 2273 opt: 2273  Z-score: 2505.8  bits: 472.3 E(85289): 7.8e-133
Smith-Waterman score: 2273; 90.7% identity (96.4% similar) in 365 aa overlap (1-365:1-365)

               10        20        30        40        50        60
pF1KE1 MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRF
       :::::::::.::::::::::::::::::::::.:::::::::::::::::::::::::::
NP_001 MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DSDAASQRMEPRAPWIEQEGPEYWDRNTRNVKAHSQTDRESLRIALRYYNQSEDGSHTIQ
       :::::::.:::::::::::::::::..:::.:::::::: .:     :::::::::::::
NP_001 DSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RMYGCDVGPDGRFLRGYQQDAYDGKDYIALNEDLRSWTAADMAAQITQRKWETAHEAEQW
        ::::::::::::::::.:::::::::::::::::::::::::::::.::::..: ::: 
NP_001 IMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 RAYLEGRCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLT
       :.:::::::. :::::::::::::::: :::::::: .::::::::::::.:::::::::
NP_001 RVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP
       :::::::::::::::::::::::::::::.::::::.:::::::::::::::::::::: 
NP_001 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 SSQPTIPIVGIIAGLVLFGAVIAGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQGSDMSL
       :::::::::::::::::.::::.:::::::::::::::::::::.::::::::::::.::
NP_001 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL
              310       320       330       340       350       360

            
pF1KE1 TACKV
       :::::
NP_001 TACKV
            

>>XP_016885777 (OMIM: 142800,608579) PREDICTED: HLA clas  (362 aa)
 initn: 2262 init1: 2262 opt: 2262  Z-score: 2493.8  bits: 470.0 E(85289): 3.6e-132
Smith-Waterman score: 2262; 92.0% identity (95.6% similar) in 362 aa overlap (4-365:1-362)

               10        20        30        40        50        60
pF1KE1 MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRF
          :::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
XP_016    MAPRTLVLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF
                  10        20        30        40        50       

               70        80        90       100       110       120
pF1KE1 DSDAASQRMEPRAPWIEQEGPEYWDRNTRNVKAHSQTDRESLRIALRYYNQSEDGSHTIQ
       ::::::::::::::::::::::::: .::.::::::: : .:     :::::: ::::.:
XP_016 DSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQ
        60        70        80        90       100       110       

              130       140       150       160       170       180
pF1KE1 RMYGCDVGPDGRFLRGYQQDAYDGKDYIALNEDLRSWTAADMAAQITQRKWETAHEAEQW
       :::::::: : ::::::.: ::::::::::.:::::::::::::: :..:::.:: ::: 
XP_016 RMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQL
       120       130       140       150       160       170       

              190       200       210       220       230       240
pF1KE1 RAYLEGRCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLT
       :::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLT
       180       190       200       210       220       230       

              250       260       270       280       290       300
pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP
       :::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::
XP_016 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP
       240       250       260       270       280       290       

              310       320       330       340       350       360
pF1KE1 SSQPTIPIVGIIAGLVLFGAVIAGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQGSDMSL
       ::::::::::::::::::::::.::::::::::::::::::::::::::::::::::.::
XP_016 SSQPTIPIVGIIAGLVLFGAVITGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQGSDVSL
       300       310       320       330       340       350       

            
pF1KE1 TACKV
       :::::
XP_016 TACKV
       360  

>>XP_005275388 (OMIM: 142800,608579) PREDICTED: HLA clas  (391 aa)
 initn: 2257 init1: 2257 opt: 2257  Z-score: 2487.8  bits: 469.0 E(85289): 7.8e-132
Smith-Waterman score: 2257; 92.0% identity (95.6% similar) in 361 aa overlap (4-364:1-361)

               10        20        30        40        50        60
pF1KE1 MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRF
          :::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
XP_005    MAPRTLVLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF
                  10        20        30        40        50       

               70        80        90       100       110       120
pF1KE1 DSDAASQRMEPRAPWIEQEGPEYWDRNTRNVKAHSQTDRESLRIALRYYNQSEDGSHTIQ
       ::::::::::::::::::::::::: .::.::::::: : .:     :::::: ::::.:
XP_005 DSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQ
        60        70        80        90       100       110       

              130       140       150       160       170       180
pF1KE1 RMYGCDVGPDGRFLRGYQQDAYDGKDYIALNEDLRSWTAADMAAQITQRKWETAHEAEQW
       :::::::: : ::::::.: ::::::::::.:::::::::::::: :..:::.:: ::: 
XP_005 RMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQL
       120       130       140       150       160       170       

              190       200       210       220       230       240
pF1KE1 RAYLEGRCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLT
       :::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLT
       180       190       200       210       220       230       

              250       260       270       280       290       300
pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP
       :::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::
XP_005 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP
       240       250       260       270       280       290       

              310       320       330       340       350       360
pF1KE1 SSQPTIPIVGIIAGLVLFGAVIAGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQGSDMSL
       ::::::::::::::::::::::.::::::::::::::::::::::::::::::::::.::
XP_005 SSQPTIPIVGIIAGLVLFGAVITGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQGSDVSL
       300       310       320       330       340       350       

                                         
pF1KE1 TACKV                             
       ::::                              
XP_005 TACKGESLEGLMCVGCWAEQWTQLCYGVSFHWMY
       360       370       380       390 

>>NP_005505 (OMIM: 106300,142830,608579) major histocomp  (362 aa)
 initn: 2095 init1: 2095 opt: 2095  Z-score: 2310.1  bits: 436.0 E(85289): 6.2e-122
Smith-Waterman score: 2095; 84.5% identity (93.4% similar) in 362 aa overlap (1-362:1-362)

               10        20        30        40        50        60
pF1KE1 MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRF
       : ::::::..::::.:::::.::::::::::::::::::::::::::.::::::::::::
NP_005 MLVMAPRTVLLLLSAALALTETWAGSHSMRYFYTSVSRPGRGEPRFISVGYVDDTQFVRF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DSDAASQRMEPRAPWIEQEGPEYWDRNTRNVKAHSQTDRESLRIALRYYNQSEDGSHTIQ
       :::::: : :::::::::::::::::::.  ::..::::::::    :::::: ::::.:
NP_005 DSDAASPREEPRAPWIEQEGPEYWDRNTQIYKAQAQTDRESLRNLRGYYNQSEAGSHTLQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RMYGCDVGPDGRFLRGYQQDAYDGKDYIALNEDLRSWTAADMAAQITQRKWETAHEAEQW
        :::::::::::.:::..: ::::::::::::::::::::: ::::::::::.:.:::: 
NP_005 SMYGCDVGPDGRLLRGHDQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 RAYLEGRCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLT
       ::::::.:::::::::::::. :.:.: ::::.::: .::::::::::::.:::::::::
NP_005 RAYLEGECVEWLRRYLENGKDKLERADPPKTHVTHHPISDHEATLRCWALGFYPAEITLT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP
       :::::::::::::::::::::: ::::::.::::::.:::::::::::::::::::::::
NP_005 WQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 SSQPTIPIVGIIAGLVLFGAVIAGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQGSDMSL
       ::: :.:::::.:::.....:. :::::::: :::::  ::::::::: ::::::::.::
NP_005 SSQSTVPIVGIVAGLAVLAVVVIGAVVAAVMCRRKSSGGKGGSYSQAACSDSAQGSDVSL
              310       320       330       340       350       360

            
pF1KE1 TACKV
       ::   
NP_005 TA   
            

>>NP_001229971 (OMIM: 142840,177900,609423) HLA class I   (366 aa)
 initn: 1926 init1: 1845 opt: 2014  Z-score: 2220.9  bits: 419.6 E(85289): 5.7e-117
Smith-Waterman score: 2014; 81.4% identity (91.0% similar) in 365 aa overlap (1-364:1-365)

               10        20        30        40        50        60
pF1KE1 MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRF
       : :::::.:.:::::.::::.::: ::::::: :.::::::::::::.::::::::::::
NP_001 MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DSDAASQRMEPRAPWIEQEGPEYWDRNTRNVKAHSQTDRESLRIALRYYNQSEDGSHTIQ
       :::::: : ::::::.::::::::::.:.: : ..:.:: :::    :::::::::::.:
NP_001 DSDAASPRGEPRAPWVEQEGPEYWDRETQNYKRQAQADRVSLRNLRGYYNQSEDGSHTLQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RMYGCDVGPDGRFLRGYQQDAYDGKDYIALNEDLRSWTAADMAAQITQRKWETAHEAEQW
       ::::::.:::::.::::.:.::::::::::::::::::::: :::::::: :.:. ::: 
NP_001 RMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 RAYLEGRCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLT
       :::::: ::::::::::::::::::.. ::::.::: .::::::::::::.:::::::::
NP_001 RAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP
       :::::::::::::::::::::::::::::.::::::::::::::.::::: .:::: :::
NP_001 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEP
              250       260       270       280       290       300

              310        320       330       340       350         
pF1KE1 SSQPTIPIVGIIAGL-VLFGAVIAGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQGSDMS
       ::::::::.::.::: ::   .. ::::.:.: :::::  :::: :::: :.:::::: :
NP_001 SSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGGKGGSCSQAACSNSAQGSDES
              310       320       330       340       350       360

     360     
pF1KE1 LTACKV
       : .:: 
NP_001 LITCKA
             

>>NP_002108 (OMIM: 142840,177900,609423) HLA class I his  (366 aa)
 initn: 1909 init1: 1828 opt: 1997  Z-score: 2202.2  bits: 416.1 E(85289): 6.3e-116
Smith-Waterman score: 1997; 80.8% identity (90.7% similar) in 365 aa overlap (1-364:1-365)

               10        20        30        40        50        60
pF1KE1 MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRF
       : :::::.:.:::::.::::.::: ::::::: :.::::::::::::.::::::::::::
NP_002 MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DSDAASQRMEPRAPWIEQEGPEYWDRNTRNVKAHSQTDRESLRIALRYYNQSEDGSHTIQ
       :::::: : ::::::.::::::::::.:.. : ..:.:: :::    :::::::::::.:
NP_002 DSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQADRVSLRNLRGYYNQSEDGSHTLQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RMYGCDVGPDGRFLRGYQQDAYDGKDYIALNEDLRSWTAADMAAQITQRKWETAHEAEQW
       :: :::.:::::.::::.:.::::::::::::::::::::: :::::::: :.:. ::: 
NP_002 RMSGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 RAYLEGRCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLT
       :::::: ::::::::::::::::::.. ::::.::: .::::::::::::.:::::::::
NP_002 RAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP
       :::::::::::::::::::::::::::::.::::::::::::::.::::: .:::: :::
NP_002 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEP
              250       260       270       280       290       300

              310        320       330       340       350         
pF1KE1 SSQPTIPIVGIIAGL-VLFGAVIAGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQGSDMS
       ::::::::.::.::: ::   .. ::::.:.: :::::  :::: :::: :.:::::: :
NP_002 SSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGGKGGSCSQAACSNSAQGSDES
              310       320       330       340       350       360

     360     
pF1KE1 LTACKV
       : .:: 
NP_002 LITCKA
             

>>XP_016866302 (OMIM: 143110) PREDICTED: HLA class I his  (388 aa)
 initn: 1932 init1: 1904 opt: 1904  Z-score: 2099.6  bits: 397.2 E(85289): 3.3e-110
Smith-Waterman score: 1904; 76.9% identity (91.3% similar) in 355 aa overlap (4-358:1-355)

               10        20        30        40        50        60
pF1KE1 MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRF
          ::::.:.::::::::::.:::::::.::: :.::::::::::.::: :::::::.::
XP_016    MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRF
                  10        20        30        40        50       

               70        80        90       100       110       120
pF1KE1 DSDAASQRMEPRAPWIEQEGPEYWDRNTRNVKAHSQTDRESLRIALRYYNQSEDGSHTIQ
       :::::  ::::: ::.:::::.::. .:  .::..:::: .::  :: ::::: ::::.:
XP_016 DSDAAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQ
        60        70        80        90       100       110       

              130       140       150       160       170       180
pF1KE1 RMYGCDVGPDGRFLRGYQQDAYDGKDYIALNEDLRSWTAADMAAQITQRKWETAHEAEQW
        : :::.:::::.::::.: ::::::::.:::::::::::: .:::::: .:. . ::..
XP_016 GMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEF
       120       130       140       150       160       170       

              190       200       210       220       230       240
pF1KE1 RAYLEGRCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLT
       :.::::.:.: ::::::::::::::.: ::.:..:: .::::::::::::.:::::::::
XP_016 RTYLEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLT
       180       190       200       210       220       230       

              250       260       270       280       290       300
pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP
       ::::::.::::::::::::::::::::::.:::: :.::::::::::::::.:: :::: 
XP_016 WQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQ
       240       250       260       270       280       290       

              310       320       330       340       350       360
pF1KE1 SSQPTIPIVGIIAGLVLFGAVIAGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQGSDMSL
       : :::::::::.::::..:::..::::::::::.:::::. :::::::. . ..:. :  
XP_016 SPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAAAYSVVSGNLMIT
       300       310       320       330       340       350       

                                      
pF1KE1 TACKV                          
                                      
XP_016 WWSSLFLLGVLFQGYLGCLRSHSVLGRRKES
       360       370       380        

>>XP_016866301 (OMIM: 143110) PREDICTED: HLA class I his  (420 aa)
 initn: 1932 init1: 1904 opt: 1904  Z-score: 2099.2  bits: 397.2 E(85289): 3.5e-110
Smith-Waterman score: 1904; 76.9% identity (91.3% similar) in 355 aa overlap (4-358:1-355)

               10        20        30        40        50        60
pF1KE1 MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRF
          ::::.:.::::::::::.:::::::.::: :.::::::::::.::: :::::::.::
XP_016    MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRF
                  10        20        30        40        50       

               70        80        90       100       110       120
pF1KE1 DSDAASQRMEPRAPWIEQEGPEYWDRNTRNVKAHSQTDRESLRIALRYYNQSEDGSHTIQ
       :::::  ::::: ::.:::::.::. .:  .::..:::: .::  :: ::::: ::::.:
XP_016 DSDAAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQ
        60        70        80        90       100       110       

              130       140       150       160       170       180
pF1KE1 RMYGCDVGPDGRFLRGYQQDAYDGKDYIALNEDLRSWTAADMAAQITQRKWETAHEAEQW
        : :::.:::::.::::.: ::::::::.:::::::::::: .:::::: .:. . ::..
XP_016 GMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEF
       120       130       140       150       160       170       

              190       200       210       220       230       240
pF1KE1 RAYLEGRCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLT
       :.::::.:.: ::::::::::::::.: ::.:..:: .::::::::::::.:::::::::
XP_016 RTYLEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLT
       180       190       200       210       220       230       

              250       260       270       280       290       300
pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP
       ::::::.::::::::::::::::::::::.:::: :.::::::::::::::.:: :::: 
XP_016 WQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQ
       240       250       260       270       280       290       

              310       320       330       340       350       360
pF1KE1 SSQPTIPIVGIIAGLVLFGAVIAGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQGSDMSL
       : :::::::::.::::..:::..::::::::::.:::::. :::::::. . ..:. :  
XP_016 SPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAAAYSVVSGNLMIT
       300       310       320       330       340       350       

                                                                   
pF1KE1 TACKV                                                       
                                                                   
XP_016 WWSSLFLLGVLFQGYLGCLRSHSVLGRRKNGITCFRDEAKYLWNLLHTEFIILFPLMPLT
       360       370       380       390       400       410       

>>XP_016866299 (OMIM: 143110) PREDICTED: HLA class I his  (435 aa)
 initn: 1932 init1: 1904 opt: 1904  Z-score: 2099.0  bits: 397.2 E(85289): 3.6e-110
Smith-Waterman score: 1904; 76.9% identity (91.3% similar) in 355 aa overlap (4-358:1-355)

               10        20        30        40        50        60
pF1KE1 MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRF
          ::::.:.::::::::::.:::::::.::: :.::::::::::.::: :::::::.::
XP_016    MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRF
                  10        20        30        40        50       

               70        80        90       100       110       120
pF1KE1 DSDAASQRMEPRAPWIEQEGPEYWDRNTRNVKAHSQTDRESLRIALRYYNQSEDGSHTIQ
       :::::  ::::: ::.:::::.::. .:  .::..:::: .::  :: ::::: ::::.:
XP_016 DSDAAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQ
        60        70        80        90       100       110       

              130       140       150       160       170       180
pF1KE1 RMYGCDVGPDGRFLRGYQQDAYDGKDYIALNEDLRSWTAADMAAQITQRKWETAHEAEQW
        : :::.:::::.::::.: ::::::::.:::::::::::: .:::::: .:. . ::..
XP_016 GMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEF
       120       130       140       150       160       170       

              190       200       210       220       230       240
pF1KE1 RAYLEGRCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLT
       :.::::.:.: ::::::::::::::.: ::.:..:: .::::::::::::.:::::::::
XP_016 RTYLEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLT
       180       190       200       210       220       230       

              250       260       270       280       290       300
pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP
       ::::::.::::::::::::::::::::::.:::: :.::::::::::::::.:: :::: 
XP_016 WQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQ
       240       250       260       270       280       290       

              310       320       330       340       350       360
pF1KE1 SSQPTIPIVGIIAGLVLFGAVIAGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQGSDMSL
       : :::::::::.::::..:::..::::::::::.:::::. :::::::. . ..:. :  
XP_016 SPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAAAYSVVSGNLMIT
       300       310       320       330       340       350       

                                                                   
pF1KE1 TACKV                                                       
                                                                   
XP_016 WWSSLFLLGVLFQGYLGCLRSHSVLGRRKAQLLSVSTSQTSILIQEQFSHQRTLAMSGKM
       360       370       380       390       400       410       




365 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:08:15 2016 done: Mon Nov  7 02:08:16 2016
 Total Scan time:  7.980 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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