FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1575, 365 aa 1>>>pF1KE1575 365 - 365 aa - 365 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0478+/-0.000362; mu= 19.0366+/- 0.022 mean_var=82.6570+/-17.081, 0's: 0 Z-trim(115.2): 136 B-trim: 1498 in 2/54 Lambda= 0.141070 statistics sampled from 25339 (25503) to 25339 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.299), width: 16 Scan time: 7.980 The best scores are: opt bits E(85289) NP_002107 (OMIM: 142800,608579) HLA class I histoc ( 365) 2276 472.9 5.1e-133 NP_001229687 (OMIM: 142800,608579) HLA class I his ( 365) 2273 472.3 7.8e-133 XP_016885777 (OMIM: 142800,608579) PREDICTED: HLA ( 362) 2262 470.0 3.6e-132 XP_005275388 (OMIM: 142800,608579) PREDICTED: HLA ( 391) 2257 469.0 7.8e-132 NP_005505 (OMIM: 106300,142830,608579) major histo ( 362) 2095 436.0 6.2e-122 NP_001229971 (OMIM: 142840,177900,609423) HLA clas ( 366) 2014 419.6 5.7e-117 NP_002108 (OMIM: 142840,177900,609423) HLA class I ( 366) 1997 416.1 6.3e-116 XP_016866302 (OMIM: 143110) PREDICTED: HLA class I ( 388) 1904 397.2 3.3e-110 XP_016866301 (OMIM: 143110) PREDICTED: HLA class I ( 420) 1904 397.2 3.5e-110 XP_016866299 (OMIM: 143110) PREDICTED: HLA class I ( 435) 1904 397.2 3.6e-110 NP_001091949 (OMIM: 143110) HLA class I histocompa ( 442) 1904 397.2 3.6e-110 NP_061823 (OMIM: 143110) HLA class I histocompatib ( 346) 1895 395.3 1.1e-109 NP_005507 (OMIM: 143010) HLA class I histocompatib ( 358) 1870 390.2 3.7e-108 NP_002118 (OMIM: 142871,600807) HLA class I histoc ( 338) 1866 389.4 6.3e-108 XP_016866305 (OMIM: 142871,600807) PREDICTED: HLA ( 343) 1866 389.4 6.4e-108 XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343) 1842 384.5 1.9e-106 XP_016866300 (OMIM: 143110) PREDICTED: HLA class I ( 431) 1840 384.2 2.9e-106 XP_016866298 (OMIM: 143010) PREDICTED: HLA class I ( 359) 1830 382.1 1.1e-105 XP_011512859 (OMIM: 106300,142830,608579) PREDICTE ( 323) 1795 374.9 1.4e-103 XP_016866297 (OMIM: 143010) PREDICTED: HLA class I ( 399) 1782 372.4 1e-102 XP_016866296 (OMIM: 143010) PREDICTED: HLA class I ( 399) 1782 372.4 1e-102 XP_016866303 (OMIM: 143110) PREDICTED: HLA class I ( 324) 1303 274.8 1.9e-73 XP_016866304 (OMIM: 143110) PREDICTED: HLA class I ( 228) 1294 272.8 5.3e-73 NP_001091948 (OMIM: 143110) HLA class I histocompa ( 254) 1045 222.2 1e-57 NP_001522 (OMIM: 600764) major histocompatibility ( 341) 816 175.7 1.4e-43 XP_016866306 (OMIM: 142871,600807) PREDICTED: HLA ( 246) 795 171.3 2.1e-42 XP_016866307 (OMIM: 142871,600807) PREDICTED: HLA ( 246) 795 171.3 2.1e-42 XP_011512845 (OMIM: 104300,176100,176200,235200,61 ( 348) 737 159.6 9.5e-39 NP_000401 (OMIM: 104300,176100,176200,235200,61263 ( 348) 737 159.6 9.5e-39 NP_001287678 (OMIM: 104300,176100,176200,235200,61 ( 337) 730 158.2 2.5e-38 NP_620578 (OMIM: 104300,176100,176200,235200,61263 ( 325) 688 149.6 9.1e-36 NP_001176 (OMIM: 194460) zinc-alpha-2-glycoprotein ( 298) 675 147.0 5.4e-35 XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254) 593 130.2 5.1e-30 NP_620576 (OMIM: 104300,176100,176200,235200,61263 ( 260) 571 125.7 1.1e-28 NP_001181929 (OMIM: 600764) major histocompatibili ( 249) 543 120.0 5.8e-27 XP_006711349 (OMIM: 600764) PREDICTED: major histo ( 312) 533 118.1 2.8e-26 NP_001181964 (OMIM: 600764) major histocompatibili ( 214) 530 117.3 3.2e-26 NP_001170990 (OMIM: 600169) MHC class I polypeptid ( 332) 514 114.2 4.2e-25 NP_000238 (OMIM: 600169) MHC class I polypeptide-r ( 383) 498 111.0 4.5e-24 NP_005922 (OMIM: 602436) MHC class I polypeptide-r ( 383) 482 107.8 4.3e-23 NP_001276089 (OMIM: 602436) MHC class I polypeptid ( 351) 454 102.0 2.1e-21 NP_001181928 (OMIM: 600764) major histocompatibili ( 296) 452 101.6 2.5e-21 NP_001129491 (OMIM: 601437) IgG receptor FcRn larg ( 365) 423 95.8 1.7e-19 NP_004098 (OMIM: 601437) IgG receptor FcRn large s ( 365) 423 95.8 1.7e-19 NP_620579 (OMIM: 104300,176100,176200,235200,61263 ( 168) 380 86.7 4.2e-17 NP_001297142 (OMIM: 600764) major histocompatibili ( 178) 380 86.7 4.4e-17 NP_620573 (OMIM: 104300,176100,176200,235200,61263 ( 256) 380 86.9 5.7e-17 NP_001276082 (OMIM: 600169) MHC class I polypeptid ( 235) 374 85.6 1.3e-16 NP_001276081 (OMIM: 600169) MHC class I polypeptid ( 235) 374 85.6 1.3e-16 NP_620577 (OMIM: 104300,176100,176200,235200,61263 ( 246) 369 84.6 2.6e-16 >>NP_002107 (OMIM: 142800,608579) HLA class I histocompa (365 aa) initn: 2276 init1: 2276 opt: 2276 Z-score: 2509.1 bits: 472.9 E(85289): 5.1e-133 Smith-Waterman score: 2276; 91.2% identity (96.2% similar) in 365 aa overlap (1-365:1-365) 10 20 30 40 50 60 pF1KE1 MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRF :::::::::.::::::::::::::::::::::.::::::::::::::::::::::::::: NP_002 MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DSDAASQRMEPRAPWIEQEGPEYWDRNTRNVKAHSQTDRESLRIALRYYNQSEDGSHTIQ :::::::::::::::::::::::::..::::::.::::: .: :::::: :::::: NP_002 DSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 RMYGCDVGPDGRFLRGYQQDAYDGKDYIALNEDLRSWTAADMAAQITQRKWETAHEAEQW ::::::: ::::::::.:::::::::::::::::::::::::::::.::::.:::::: NP_002 IMYGCDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 RAYLEGRCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLT ::::.: :::::::::::::::::::: :::::::: .::::::::::::.::::::::: NP_002 RAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP :::::::::::::::::::::::::::::.::::::.:::::::::::::::::::::: NP_002 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 SSQPTIPIVGIIAGLVLFGAVIAGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQGSDMSL :::::::::::::::::.::::.:::::::::::::::::::::.::::::::::::.:: NP_002 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL 310 320 330 340 350 360 pF1KE1 TACKV ::::: NP_002 TACKV >>NP_001229687 (OMIM: 142800,608579) HLA class I histoco (365 aa) initn: 2273 init1: 2273 opt: 2273 Z-score: 2505.8 bits: 472.3 E(85289): 7.8e-133 Smith-Waterman score: 2273; 90.7% identity (96.4% similar) in 365 aa overlap (1-365:1-365) 10 20 30 40 50 60 pF1KE1 MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRF :::::::::.::::::::::::::::::::::.::::::::::::::::::::::::::: NP_001 MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DSDAASQRMEPRAPWIEQEGPEYWDRNTRNVKAHSQTDRESLRIALRYYNQSEDGSHTIQ :::::::.:::::::::::::::::..:::.:::::::: .: ::::::::::::: NP_001 DSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 RMYGCDVGPDGRFLRGYQQDAYDGKDYIALNEDLRSWTAADMAAQITQRKWETAHEAEQW ::::::::::::::::.:::::::::::::::::::::::::::::.::::..: ::: NP_001 IMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 RAYLEGRCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLT :.:::::::. :::::::::::::::: :::::::: .::::::::::::.::::::::: NP_001 RVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP :::::::::::::::::::::::::::::.::::::.:::::::::::::::::::::: NP_001 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 SSQPTIPIVGIIAGLVLFGAVIAGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQGSDMSL :::::::::::::::::.::::.:::::::::::::::::::::.::::::::::::.:: NP_001 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL 310 320 330 340 350 360 pF1KE1 TACKV ::::: NP_001 TACKV >>XP_016885777 (OMIM: 142800,608579) PREDICTED: HLA clas (362 aa) initn: 2262 init1: 2262 opt: 2262 Z-score: 2493.8 bits: 470.0 E(85289): 3.6e-132 Smith-Waterman score: 2262; 92.0% identity (95.6% similar) in 362 aa overlap (4-365:1-362) 10 20 30 40 50 60 pF1KE1 MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRF :::::::::::::::::::::::::::::.::::::::::::::::::::::::::: XP_016 MAPRTLVLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 DSDAASQRMEPRAPWIEQEGPEYWDRNTRNVKAHSQTDRESLRIALRYYNQSEDGSHTIQ ::::::::::::::::::::::::: .::.::::::: : .: :::::: ::::.: XP_016 DSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQ 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 RMYGCDVGPDGRFLRGYQQDAYDGKDYIALNEDLRSWTAADMAAQITQRKWETAHEAEQW :::::::: : ::::::.: ::::::::::.:::::::::::::: :..:::.:: ::: XP_016 RMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQL 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE1 RAYLEGRCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLT :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLT 180 190 200 210 220 230 250 260 270 280 290 300 pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP :::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::: XP_016 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP 240 250 260 270 280 290 310 320 330 340 350 360 pF1KE1 SSQPTIPIVGIIAGLVLFGAVIAGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQGSDMSL ::::::::::::::::::::::.::::::::::::::::::::::::::::::::::.:: XP_016 SSQPTIPIVGIIAGLVLFGAVITGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQGSDVSL 300 310 320 330 340 350 pF1KE1 TACKV ::::: XP_016 TACKV 360 >>XP_005275388 (OMIM: 142800,608579) PREDICTED: HLA clas (391 aa) initn: 2257 init1: 2257 opt: 2257 Z-score: 2487.8 bits: 469.0 E(85289): 7.8e-132 Smith-Waterman score: 2257; 92.0% identity (95.6% similar) in 361 aa overlap (4-364:1-361) 10 20 30 40 50 60 pF1KE1 MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRF :::::::::::::::::::::::::::::.::::::::::::::::::::::::::: XP_005 MAPRTLVLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 DSDAASQRMEPRAPWIEQEGPEYWDRNTRNVKAHSQTDRESLRIALRYYNQSEDGSHTIQ ::::::::::::::::::::::::: .::.::::::: : .: :::::: ::::.: XP_005 DSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQ 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 RMYGCDVGPDGRFLRGYQQDAYDGKDYIALNEDLRSWTAADMAAQITQRKWETAHEAEQW :::::::: : ::::::.: ::::::::::.:::::::::::::: :..:::.:: ::: XP_005 RMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQL 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE1 RAYLEGRCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLT :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 RAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLT 180 190 200 210 220 230 250 260 270 280 290 300 pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP :::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::: XP_005 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP 240 250 260 270 280 290 310 320 330 340 350 360 pF1KE1 SSQPTIPIVGIIAGLVLFGAVIAGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQGSDMSL ::::::::::::::::::::::.::::::::::::::::::::::::::::::::::.:: XP_005 SSQPTIPIVGIIAGLVLFGAVITGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQGSDVSL 300 310 320 330 340 350 pF1KE1 TACKV :::: XP_005 TACKGESLEGLMCVGCWAEQWTQLCYGVSFHWMY 360 370 380 390 >>NP_005505 (OMIM: 106300,142830,608579) major histocomp (362 aa) initn: 2095 init1: 2095 opt: 2095 Z-score: 2310.1 bits: 436.0 E(85289): 6.2e-122 Smith-Waterman score: 2095; 84.5% identity (93.4% similar) in 362 aa overlap (1-362:1-362) 10 20 30 40 50 60 pF1KE1 MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRF : ::::::..::::.:::::.::::::::::::::::::::::::::.:::::::::::: NP_005 MLVMAPRTVLLLLSAALALTETWAGSHSMRYFYTSVSRPGRGEPRFISVGYVDDTQFVRF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DSDAASQRMEPRAPWIEQEGPEYWDRNTRNVKAHSQTDRESLRIALRYYNQSEDGSHTIQ :::::: : :::::::::::::::::::. ::..:::::::: :::::: ::::.: NP_005 DSDAASPREEPRAPWIEQEGPEYWDRNTQIYKAQAQTDRESLRNLRGYYNQSEAGSHTLQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 RMYGCDVGPDGRFLRGYQQDAYDGKDYIALNEDLRSWTAADMAAQITQRKWETAHEAEQW :::::::::::.:::..: ::::::::::::::::::::: ::::::::::.:.:::: NP_005 SMYGCDVGPDGRLLRGHDQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 RAYLEGRCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLT ::::::.:::::::::::::. :.:.: ::::.::: .::::::::::::.::::::::: NP_005 RAYLEGECVEWLRRYLENGKDKLERADPPKTHVTHHPISDHEATLRCWALGFYPAEITLT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP :::::::::::::::::::::: ::::::.::::::.::::::::::::::::::::::: NP_005 WQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 SSQPTIPIVGIIAGLVLFGAVIAGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQGSDMSL ::: :.:::::.:::.....:. :::::::: ::::: ::::::::: ::::::::.:: NP_005 SSQSTVPIVGIVAGLAVLAVVVIGAVVAAVMCRRKSSGGKGGSYSQAACSDSAQGSDVSL 310 320 330 340 350 360 pF1KE1 TACKV :: NP_005 TA >>NP_001229971 (OMIM: 142840,177900,609423) HLA class I (366 aa) initn: 1926 init1: 1845 opt: 2014 Z-score: 2220.9 bits: 419.6 E(85289): 5.7e-117 Smith-Waterman score: 2014; 81.4% identity (91.0% similar) in 365 aa overlap (1-364:1-365) 10 20 30 40 50 60 pF1KE1 MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRF : :::::.:.:::::.::::.::: ::::::: :.::::::::::::.:::::::::::: NP_001 MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DSDAASQRMEPRAPWIEQEGPEYWDRNTRNVKAHSQTDRESLRIALRYYNQSEDGSHTIQ :::::: : ::::::.::::::::::.:.: : ..:.:: ::: :::::::::::.: NP_001 DSDAASPRGEPRAPWVEQEGPEYWDRETQNYKRQAQADRVSLRNLRGYYNQSEDGSHTLQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 RMYGCDVGPDGRFLRGYQQDAYDGKDYIALNEDLRSWTAADMAAQITQRKWETAHEAEQW ::::::.:::::.::::.:.::::::::::::::::::::: :::::::: :.:. ::: NP_001 RMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 RAYLEGRCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLT :::::: ::::::::::::::::::.. ::::.::: .::::::::::::.::::::::: NP_001 RAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP :::::::::::::::::::::::::::::.::::::::::::::.::::: .:::: ::: NP_001 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEP 250 260 270 280 290 300 310 320 330 340 350 pF1KE1 SSQPTIPIVGIIAGL-VLFGAVIAGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQGSDMS ::::::::.::.::: :: .. ::::.:.: ::::: :::: :::: :.:::::: : NP_001 SSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGGKGGSCSQAACSNSAQGSDES 310 320 330 340 350 360 360 pF1KE1 LTACKV : .:: NP_001 LITCKA >>NP_002108 (OMIM: 142840,177900,609423) HLA class I his (366 aa) initn: 1909 init1: 1828 opt: 1997 Z-score: 2202.2 bits: 416.1 E(85289): 6.3e-116 Smith-Waterman score: 1997; 80.8% identity (90.7% similar) in 365 aa overlap (1-364:1-365) 10 20 30 40 50 60 pF1KE1 MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRF : :::::.:.:::::.::::.::: ::::::: :.::::::::::::.:::::::::::: NP_002 MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DSDAASQRMEPRAPWIEQEGPEYWDRNTRNVKAHSQTDRESLRIALRYYNQSEDGSHTIQ :::::: : ::::::.::::::::::.:.. : ..:.:: ::: :::::::::::.: NP_002 DSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQADRVSLRNLRGYYNQSEDGSHTLQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 RMYGCDVGPDGRFLRGYQQDAYDGKDYIALNEDLRSWTAADMAAQITQRKWETAHEAEQW :: :::.:::::.::::.:.::::::::::::::::::::: :::::::: :.:. ::: NP_002 RMSGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 RAYLEGRCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLT :::::: ::::::::::::::::::.. ::::.::: .::::::::::::.::::::::: NP_002 RAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP :::::::::::::::::::::::::::::.::::::::::::::.::::: .:::: ::: NP_002 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEP 250 260 270 280 290 300 310 320 330 340 350 pF1KE1 SSQPTIPIVGIIAGL-VLFGAVIAGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQGSDMS ::::::::.::.::: :: .. ::::.:.: ::::: :::: :::: :.:::::: : NP_002 SSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGGKGGSCSQAACSNSAQGSDES 310 320 330 340 350 360 360 pF1KE1 LTACKV : .:: NP_002 LITCKA >>XP_016866302 (OMIM: 143110) PREDICTED: HLA class I his (388 aa) initn: 1932 init1: 1904 opt: 1904 Z-score: 2099.6 bits: 397.2 E(85289): 3.3e-110 Smith-Waterman score: 1904; 76.9% identity (91.3% similar) in 355 aa overlap (4-358:1-355) 10 20 30 40 50 60 pF1KE1 MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRF ::::.:.::::::::::.:::::::.::: :.::::::::::.::: :::::::.:: XP_016 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRF 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 DSDAASQRMEPRAPWIEQEGPEYWDRNTRNVKAHSQTDRESLRIALRYYNQSEDGSHTIQ ::::: ::::: ::.:::::.::. .: .::..:::: .:: :: ::::: ::::.: XP_016 DSDAAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQ 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 RMYGCDVGPDGRFLRGYQQDAYDGKDYIALNEDLRSWTAADMAAQITQRKWETAHEAEQW : :::.:::::.::::.: ::::::::.:::::::::::: .:::::: .:. . ::.. XP_016 GMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEF 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE1 RAYLEGRCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLT :.::::.:.: ::::::::::::::.: ::.:..:: .::::::::::::.::::::::: XP_016 RTYLEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLT 180 190 200 210 220 230 250 260 270 280 290 300 pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP ::::::.::::::::::::::::::::::.:::: :.::::::::::::::.:: :::: XP_016 WQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQ 240 250 260 270 280 290 310 320 330 340 350 360 pF1KE1 SSQPTIPIVGIIAGLVLFGAVIAGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQGSDMSL : :::::::::.::::..:::..::::::::::.:::::. :::::::. . ..:. : XP_016 SPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAAAYSVVSGNLMIT 300 310 320 330 340 350 pF1KE1 TACKV XP_016 WWSSLFLLGVLFQGYLGCLRSHSVLGRRKES 360 370 380 >>XP_016866301 (OMIM: 143110) PREDICTED: HLA class I his (420 aa) initn: 1932 init1: 1904 opt: 1904 Z-score: 2099.2 bits: 397.2 E(85289): 3.5e-110 Smith-Waterman score: 1904; 76.9% identity (91.3% similar) in 355 aa overlap (4-358:1-355) 10 20 30 40 50 60 pF1KE1 MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRF ::::.:.::::::::::.:::::::.::: :.::::::::::.::: :::::::.:: XP_016 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRF 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 DSDAASQRMEPRAPWIEQEGPEYWDRNTRNVKAHSQTDRESLRIALRYYNQSEDGSHTIQ ::::: ::::: ::.:::::.::. .: .::..:::: .:: :: ::::: ::::.: XP_016 DSDAAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQ 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 RMYGCDVGPDGRFLRGYQQDAYDGKDYIALNEDLRSWTAADMAAQITQRKWETAHEAEQW : :::.:::::.::::.: ::::::::.:::::::::::: .:::::: .:. . ::.. XP_016 GMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEF 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE1 RAYLEGRCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLT :.::::.:.: ::::::::::::::.: ::.:..:: .::::::::::::.::::::::: XP_016 RTYLEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLT 180 190 200 210 220 230 250 260 270 280 290 300 pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP ::::::.::::::::::::::::::::::.:::: :.::::::::::::::.:: :::: XP_016 WQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQ 240 250 260 270 280 290 310 320 330 340 350 360 pF1KE1 SSQPTIPIVGIIAGLVLFGAVIAGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQGSDMSL : :::::::::.::::..:::..::::::::::.:::::. :::::::. . ..:. : XP_016 SPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAAAYSVVSGNLMIT 300 310 320 330 340 350 pF1KE1 TACKV XP_016 WWSSLFLLGVLFQGYLGCLRSHSVLGRRKNGITCFRDEAKYLWNLLHTEFIILFPLMPLT 360 370 380 390 400 410 >>XP_016866299 (OMIM: 143110) PREDICTED: HLA class I his (435 aa) initn: 1932 init1: 1904 opt: 1904 Z-score: 2099.0 bits: 397.2 E(85289): 3.6e-110 Smith-Waterman score: 1904; 76.9% identity (91.3% similar) in 355 aa overlap (4-358:1-355) 10 20 30 40 50 60 pF1KE1 MAVMAPRTLVLLLSGALALTQTWAGSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRF ::::.:.::::::::::.:::::::.::: :.::::::::::.::: :::::::.:: XP_016 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRF 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 DSDAASQRMEPRAPWIEQEGPEYWDRNTRNVKAHSQTDRESLRIALRYYNQSEDGSHTIQ ::::: ::::: ::.:::::.::. .: .::..:::: .:: :: ::::: ::::.: XP_016 DSDAAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQ 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 RMYGCDVGPDGRFLRGYQQDAYDGKDYIALNEDLRSWTAADMAAQITQRKWETAHEAEQW : :::.:::::.::::.: ::::::::.:::::::::::: .:::::: .:. . ::.. XP_016 GMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEF 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE1 RAYLEGRCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLT :.::::.:.: ::::::::::::::.: ::.:..:: .::::::::::::.::::::::: XP_016 RTYLEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLT 180 190 200 210 220 230 250 260 270 280 290 300 pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWASVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP ::::::.::::::::::::::::::::::.:::: :.::::::::::::::.:: :::: XP_016 WQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQ 240 250 260 270 280 290 310 320 330 340 350 360 pF1KE1 SSQPTIPIVGIIAGLVLFGAVIAGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQGSDMSL : :::::::::.::::..:::..::::::::::.:::::. :::::::. . ..:. : XP_016 SPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAAAYSVVSGNLMIT 300 310 320 330 340 350 pF1KE1 TACKV XP_016 WWSSLFLLGVLFQGYLGCLRSHSVLGRRKAQLLSVSTSQTSILIQEQFSHQRTLAMSGKM 360 370 380 390 400 410 365 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:08:15 2016 done: Mon Nov 7 02:08:16 2016 Total Scan time: 7.980 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]