FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1443, 466 aa 1>>>pF1KE1443 466 - 466 aa - 466 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6877+/-0.000294; mu= 17.0688+/- 0.019 mean_var=92.9206+/-18.121, 0's: 0 Z-trim(119.2): 18 B-trim: 76 in 1/56 Lambda= 0.133051 statistics sampled from 32919 (32938) to 32919 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.742), E-opt: 0.2 (0.386), width: 16 Scan time: 9.840 The best scores are: opt bits E(85289) NP_683759 (OMIM: 615732) probable 28S rRNA (cytosi ( 466) 3121 609.0 8.5e-174 NP_001161819 (OMIM: 615732) probable 28S rRNA (cyt ( 470) 2905 567.6 2.6e-161 NP_060514 (OMIM: 615732) probable 28S rRNA (cytosi ( 429) 2863 559.5 6.5e-159 NP_001161820 (OMIM: 615732) probable 28S rRNA (cyt ( 391) 2189 430.1 5.3e-120 XP_005277661 (OMIM: 615732) PREDICTED: probable 28 ( 381) 1666 329.7 8.7e-90 NP_001028886 (OMIM: 164031) probable 28S rRNA (cyt ( 808) 380 83.1 3.1e-15 NP_006161 (OMIM: 164031) probable 28S rRNA (cytosi ( 808) 380 83.1 3.1e-15 XP_005253748 (OMIM: 164031) PREDICTED: probable 28 ( 812) 380 83.1 3.1e-15 NP_001245237 (OMIM: 164031) probable 28S rRNA (cyt ( 812) 380 83.1 3.1e-15 NP_001245238 (OMIM: 164031) probable 28S rRNA (cyt ( 845) 380 83.1 3.2e-15 NP_001245239 (OMIM: 164031) probable 28S rRNA (cyt ( 628) 375 82.0 5e-15 NP_001243056 (OMIM: 615394) 5-methylcytosine rRNA ( 335) 178 44.0 0.00076 NP_001243057 (OMIM: 615394) 5-methylcytosine rRNA ( 335) 178 44.0 0.00076 NP_950245 (OMIM: 615394) 5-methylcytosine rRNA met ( 384) 178 44.0 0.00084 NP_001180384 (OMIM: 610916,611091) tRNA (cytosine( ( 732) 170 42.7 0.004 NP_060225 (OMIM: 610916,611091) tRNA (cytosine(34) ( 767) 170 42.8 0.0041 >>NP_683759 (OMIM: 615732) probable 28S rRNA (cytosine-C (466 aa) initn: 3121 init1: 3121 opt: 3121 Z-score: 3241.2 bits: 609.0 E(85289): 8.5e-174 Smith-Waterman score: 3121; 100.0% identity (100.0% similar) in 466 aa overlap (1-466:1-466) 10 20 30 40 50 60 pF1KE1 MGLYAAAAGVLAGVESRQGSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVIASAGLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_683 MGLYAAAAGVLAGVESRQGSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVIASAGLL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 RAEKKLRPHLAKVLVYELLLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_683 RAEKKLRPHLAKVLVYELLLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNED 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LLEVGSRPGPASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_683 LLEVGSRPGPASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 LDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_683 LDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 TSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_683 TSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVH 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_683 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCS 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 LCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_683 LCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVA 370 380 390 400 410 420 430 440 450 460 pF1KE1 VIERVEVPSSASQAKASAPERTPSPAPKRKKRQQRAAAGACTPPCT :::::::::::::::::::::::::::::::::::::::::::::: NP_683 VIERVEVPSSASQAKASAPERTPSPAPKRKKRQQRAAAGACTPPCT 430 440 450 460 >>NP_001161819 (OMIM: 615732) probable 28S rRNA (cytosin (470 aa) initn: 2929 init1: 2905 opt: 2905 Z-score: 3017.0 bits: 567.6 E(85289): 2.6e-161 Smith-Waterman score: 2905; 95.4% identity (97.8% similar) in 456 aa overlap (1-456:1-456) 10 20 30 40 50 60 pF1KE1 MGLYAAAAGVLAGVESRQGSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVIASAGLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MGLYAAAAGVLAGVESRQGSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVIASAGLL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 RAEKKLRPHLAKVLVYELLLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RAEKKLRPHLAKVLVYELLLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNED 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LLEVGSRPGPASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LLEVGSRPGPASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 LDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 TSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVH 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCS 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 LCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVA 370 380 390 400 410 420 430 440 450 460 pF1KE1 VIERVEVPSSASQAKASAPERTPSPAPKRKKRQQRAAAGACTPPCT ::::::::: ..:. .. . ::: :.. ..:. NP_001 VIERVEVPSLTGQSISTRTHTQPSPKEKEETAKSRSRCLHTALHIAEAPG 430 440 450 460 470 >>NP_060514 (OMIM: 615732) probable 28S rRNA (cytosine-C (429 aa) initn: 2863 init1: 2863 opt: 2863 Z-score: 2974.0 bits: 559.5 E(85289): 6.5e-159 Smith-Waterman score: 2863; 100.0% identity (100.0% similar) in 428 aa overlap (1-428:1-428) 10 20 30 40 50 60 pF1KE1 MGLYAAAAGVLAGVESRQGSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVIASAGLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 MGLYAAAAGVLAGVESRQGSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVIASAGLL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 RAEKKLRPHLAKVLVYELLLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 RAEKKLRPHLAKVLVYELLLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNED 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LLEVGSRPGPASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 LLEVGSRPGPASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 LDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 LDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 TSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 TSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVH 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCS 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 LCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 LCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVA 370 380 390 400 410 420 430 440 450 460 pF1KE1 VIERVEVPSSASQAKASAPERTPSPAPKRKKRQQRAAAGACTPPCT :::::::: NP_060 VIERVEVPR >>NP_001161820 (OMIM: 615732) probable 28S rRNA (cytosin (391 aa) initn: 2175 init1: 2175 opt: 2189 Z-score: 2275.4 bits: 430.1 E(85289): 5.3e-120 Smith-Waterman score: 2527; 91.1% identity (91.1% similar) in 428 aa overlap (1-428:1-390) 10 20 30 40 50 60 pF1KE1 MGLYAAAAGVLAGVESRQGSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVIASAGLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MGLYAAAAGVLAGVESRQGSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVIASAGLL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 RAEKKLRPHLAKVLVYELLLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNED ::::::::::::: ::::::::: NP_001 RAEKKLRPHLAKV--------------------------------------HRGVSRNED 70 80 130 140 150 160 170 180 pF1KE1 LLEVGSRPGPASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LLEVGSRPGPASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFL 90 100 110 120 130 140 190 200 210 220 230 240 pF1KE1 LDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNK 150 160 170 180 190 200 250 260 270 280 290 300 pF1KE1 TSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVH 210 220 230 240 250 260 310 320 330 340 350 360 pF1KE1 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCS 270 280 290 300 310 320 370 380 390 400 410 420 pF1KE1 LCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVA 330 340 350 360 370 380 430 440 450 460 pF1KE1 VIERVEVPSSASQAKASAPERTPSPAPKRKKRQQRAAAGACTPPCT :::::::: NP_001 VIERVEVPR 390 >>XP_005277661 (OMIM: 615732) PREDICTED: probable 28S rR (381 aa) initn: 1690 init1: 1666 opt: 1666 Z-score: 1732.9 bits: 329.7 E(85289): 8.7e-90 Smith-Waterman score: 1666; 99.2% identity (100.0% similar) in 254 aa overlap (1-254:1-254) 10 20 30 40 50 60 pF1KE1 MGLYAAAAGVLAGVESRQGSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVIASAGLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MGLYAAAAGVLAGVESRQGSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVIASAGLL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 RAEKKLRPHLAKVLVYELLLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 RAEKKLRPHLAKVLVYELLLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNED 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LLEVGSRPGPASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LLEVGSRPGPASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 LDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 TSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVH ::::::::::::.. XP_005 TSHLAALLKNQGSLPLTWMPSGWHPWPRCWPGLASLAVNWLRRTSWRSPPRIHATMRSTT 250 260 270 280 290 300 >>NP_001028886 (OMIM: 164031) probable 28S rRNA (cytosin (808 aa) initn: 276 init1: 232 opt: 380 Z-score: 394.4 bits: 83.1 E(85289): 3.1e-15 Smith-Waterman score: 395; 32.2% identity (54.5% similar) in 354 aa overlap (131-460:299-625) 110 120 130 140 150 pF1KE1 RLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFV--RVNTLKTCSDDVVDYFKRQG :...:: : :.::::: :... . .: NP_001 DLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRG 270 280 290 300 310 320 160 170 180 190 200 210 pF1KE1 FSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLP . :: : :: :.:. ... . : : ::: .:: .: :: NP_001 VN-------LDPL----GKWSKTG-----LVVYDSSVPIGATPEYLAGHYMLQGASSMLP 330 340 350 360 370 220 230 240 250 260 270 pF1KE1 AMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC .: : : ...: : :::.:::..: :.:: : :.: : .:.:: :.. : : ::. NP_001 VMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTN 380 390 400 410 420 430 280 290 300 310 320 330 pF1KE1 CELAEED---FLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVR-LHAL ... : : : . : .::: :::.:. :. .:.. : . . . NP_001 TIISHYDGRQFPKVVGGFDR------VLLDAPCSGTGVISK---DPAVKTNKDEKDILRC 440 450 460 470 480 340 350 360 370 380 pF1KE1 AGFQQRALCHAL-----TFPSLQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPA : .:.. : :. : . ::: :::. :::: :: ::.. ::.:. NP_001 AHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKR--NVRLVPTGLD 490 500 510 520 530 540 390 400 410 420 430 440 pF1KE1 WPHRGLSTF------PGAEHCLRASPETTLSSGFFVAVIERVE--VPSSASQAKASA-PE . ..:.. : :. . : :.: .:::.: ... .:.: . . .: : NP_001 FGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSETATPT 550 560 570 580 590 600 450 460 pF1KE1 RT--PSPAPKRKKRQQRA--AAGACTPPCT . :. :: .. .: : : :: NP_001 NVDLPQVIPKSENSSQPAKKAKGAAKTKQQLQKQQHPKKASFQKLNGISKGADSELSTVP 610 620 630 640 650 660 >>NP_006161 (OMIM: 164031) probable 28S rRNA (cytosine(4 (808 aa) initn: 276 init1: 232 opt: 380 Z-score: 394.4 bits: 83.1 E(85289): 3.1e-15 Smith-Waterman score: 395; 32.2% identity (54.5% similar) in 354 aa overlap (131-460:299-625) 110 120 130 140 150 pF1KE1 RLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFV--RVNTLKTCSDDVVDYFKRQG :...:: : :.::::: :... . .: NP_006 DLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRG 270 280 290 300 310 320 160 170 180 190 200 210 pF1KE1 FSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLP . :: : :: :.:. ... . : : ::: .:: .: :: NP_006 VN-------LDPL----GKWSKTG-----LVVYDSSVPIGATPEYLAGHYMLQGASSMLP 330 340 350 360 370 220 230 240 250 260 270 pF1KE1 AMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC .: : : ...: : :::.:::..: :.:: : :.: : .:.:: :.. : : ::. NP_006 VMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTN 380 390 400 410 420 430 280 290 300 310 320 330 pF1KE1 CELAEED---FLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVR-LHAL ... : : : . : .::: :::.:. :. .:.. : . . . NP_006 TIISHYDGRQFPKVVGGFDR------VLLDAPCSGTGVISK---DPAVKTNKDEKDILRC 440 450 460 470 480 340 350 360 370 380 pF1KE1 AGFQQRALCHAL-----TFPSLQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPA : .:.. : :. : . ::: :::. :::: :: ::.. ::.:. NP_006 AHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKR--NVRLVPTGLD 490 500 510 520 530 540 390 400 410 420 430 440 pF1KE1 WPHRGLSTF------PGAEHCLRASPETTLSSGFFVAVIERVE--VPSSASQAKASA-PE . ..:.. : :. . : :.: .:::.: ... .:.: . . .: : NP_006 FGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSETATPT 550 560 570 580 590 600 450 460 pF1KE1 RT--PSPAPKRKKRQQRA--AAGACTPPCT . :. :: .. .: : : :: NP_006 NVDLPQVIPKSENSSQPAKKAKGAAKTKQQLQKQQHPKKASFQKLNGISKGADSELSTVP 610 620 630 640 650 660 >>XP_005253748 (OMIM: 164031) PREDICTED: probable 28S rR (812 aa) initn: 276 init1: 232 opt: 380 Z-score: 394.4 bits: 83.1 E(85289): 3.1e-15 Smith-Waterman score: 395; 32.2% identity (54.5% similar) in 354 aa overlap (131-460:303-629) 110 120 130 140 150 pF1KE1 RLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFV--RVNTLKTCSDDVVDYFKRQG :...:: : :.::::: :... . .: XP_005 DLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRG 280 290 300 310 320 330 160 170 180 190 200 210 pF1KE1 FSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLP . :: : :: :.:. ... . : : ::: .:: .: :: XP_005 VN-------LDPL----GKWSKTG-----LVVYDSSVPIGATPEYLAGHYMLQGASSMLP 340 350 360 370 220 230 240 250 260 270 pF1KE1 AMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC .: : : ...: : :::.:::..: :.:: : :.: : .:.:: :.. : : ::. XP_005 VMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTN 380 390 400 410 420 430 280 290 300 310 320 330 pF1KE1 CELAEED---FLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVR-LHAL ... : : : . : .::: :::.:. :. .:.. : . . . XP_005 TIISHYDGRQFPKVVGGFDR------VLLDAPCSGTGVISK---DPAVKTNKDEKDILRC 440 450 460 470 480 340 350 360 370 380 pF1KE1 AGFQQRALCHAL-----TFPSLQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPA : .:.. : :. : . ::: :::. :::: :: ::.. ::.:. XP_005 AHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKR--NVRLVPTGLD 490 500 510 520 530 540 390 400 410 420 430 440 pF1KE1 WPHRGLSTF------PGAEHCLRASPETTLSSGFFVAVIERVE--VPSSASQAKASA-PE . ..:.. : :. . : :.: .:::.: ... .:.: . . .: : XP_005 FGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSETATPT 550 560 570 580 590 600 450 460 pF1KE1 RT--PSPAPKRKKRQQRA--AAGACTPPCT . :. :: .. .: : : :: XP_005 NVDLPQVIPKSENSSQPAKKAKGAAKTKQQLQKQQHPKKASFQKLNGISKGADSELSTVP 610 620 630 640 650 660 >>NP_001245237 (OMIM: 164031) probable 28S rRNA (cytosin (812 aa) initn: 276 init1: 232 opt: 380 Z-score: 394.4 bits: 83.1 E(85289): 3.1e-15 Smith-Waterman score: 395; 32.2% identity (54.5% similar) in 354 aa overlap (131-460:303-629) 110 120 130 140 150 pF1KE1 RLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFV--RVNTLKTCSDDVVDYFKRQG :...:: : :.::::: :... . .: NP_001 DLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRG 280 290 300 310 320 330 160 170 180 190 200 210 pF1KE1 FSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLP . :: : :: :.:. ... . : : ::: .:: .: :: NP_001 VN-------LDPL----GKWSKTG-----LVVYDSSVPIGATPEYLAGHYMLQGASSMLP 340 350 360 370 220 230 240 250 260 270 pF1KE1 AMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC .: : : ...: : :::.:::..: :.:: : :.: : .:.:: :.. : : ::. NP_001 VMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTN 380 390 400 410 420 430 280 290 300 310 320 330 pF1KE1 CELAEED---FLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVR-LHAL ... : : : . : .::: :::.:. :. .:.. : . . . NP_001 TIISHYDGRQFPKVVGGFDR------VLLDAPCSGTGVISK---DPAVKTNKDEKDILRC 440 450 460 470 480 340 350 360 370 380 pF1KE1 AGFQQRALCHAL-----TFPSLQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPA : .:.. : :. : . ::: :::. :::: :: ::.. ::.:. NP_001 AHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKR--NVRLVPTGLD 490 500 510 520 530 540 390 400 410 420 430 440 pF1KE1 WPHRGLSTF------PGAEHCLRASPETTLSSGFFVAVIERVE--VPSSASQAKASA-PE . ..:.. : :. . : :.: .:::.: ... .:.: . . .: : NP_001 FGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSETATPT 550 560 570 580 590 600 450 460 pF1KE1 RT--PSPAPKRKKRQQRA--AAGACTPPCT . :. :: .. .: : : :: NP_001 NVDLPQVIPKSENSSQPAKKAKGAAKTKQQLQKQQHPKKASFQKLNGISKGADSELSTVP 610 620 630 640 650 660 >>NP_001245238 (OMIM: 164031) probable 28S rRNA (cytosin (845 aa) initn: 276 init1: 232 opt: 380 Z-score: 394.2 bits: 83.1 E(85289): 3.2e-15 Smith-Waterman score: 395; 32.2% identity (54.5% similar) in 354 aa overlap (131-460:336-662) 110 120 130 140 150 pF1KE1 RLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFV--RVNTLKTCSDDVVDYFKRQG :...:: : :.::::: :... . .: NP_001 DLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRG 310 320 330 340 350 360 160 170 180 190 200 210 pF1KE1 FSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLP . :: : :: :.:. ... . : : ::: .:: .: :: NP_001 VN-------LDPL----GKWSKTG-----LVVYDSSVPIGATPEYLAGHYMLQGASSMLP 370 380 390 400 220 230 240 250 260 270 pF1KE1 AMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC .: : : ...: : :::.:::..: :.:: : :.: : .:.:: :.. : : ::. NP_001 VMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTN 410 420 430 440 450 460 280 290 300 310 320 330 pF1KE1 CELAEED---FLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVR-LHAL ... : : : . : .::: :::.:. :. .:.. : . . . NP_001 TIISHYDGRQFPKVVGGFDR------VLLDAPCSGTGVISK---DPAVKTNKDEKDILRC 470 480 490 500 510 520 340 350 360 370 380 pF1KE1 AGFQQRALCHAL-----TFPSLQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPA : .:.. : :. : . ::: :::. :::: :: ::.. ::.:. NP_001 AHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKR--NVRLVPTGLD 530 540 550 560 570 390 400 410 420 430 440 pF1KE1 WPHRGLSTF------PGAEHCLRASPETTLSSGFFVAVIERVE--VPSSASQAKASA-PE . ..:.. : :. . : :.: .:::.: ... .:.: . . .: : NP_001 FGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSETATPT 580 590 600 610 620 630 450 460 pF1KE1 RT--PSPAPKRKKRQQRA--AAGACTPPCT . :. :: .. .: : : :: NP_001 NVDLPQVIPKSENSSQPAKKAKGAAKTKQQLQKQQHPKKASFQKLNGISKGADSELSTVP 640 650 660 670 680 690 466 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:10:30 2016 done: Mon Nov 7 02:10:31 2016 Total Scan time: 9.840 Total Display time: 0.060 Function used was FASTA [36.3.4 Apr, 2011]