FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5224, 194 aa
  1>>>pF1KE5224 194 - 194 aa - 194 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2962+/-0.000658; mu= 13.6134+/- 0.040
 mean_var=67.6637+/-13.372, 0's: 0 Z-trim(110.3): 7  B-trim: 0 in 0/52
 Lambda= 0.155918
 statistics sampled from 11491 (11495) to 11491 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.744), E-opt: 0.2 (0.353), width:  16
 Scan time:  1.920

The best scores are:                                      opt bits E(32554)
CCDS32.1 SSU72 gene_id:29101|Hs108|chr1            ( 194) 1330 307.4 3.6e-84


>>CCDS32.1 SSU72 gene_id:29101|Hs108|chr1                 (194 aa)
 initn: 1330 init1: 1330 opt: 1330  Z-score: 1624.5  bits: 307.4 E(32554): 3.6e-84
Smith-Waterman score: 1330; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194)

               10        20        30        40        50        60
pF1KE5 MPSSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MPSSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 YDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 EDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFE
              130       140       150       160       170       180

              190    
pF1KE5 EKSGRTFLHTVCFY
       ::::::::::::::
CCDS32 EKSGRTFLHTVCFY
              190    




194 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:40:04 2016 done: Mon Nov  7 22:40:04 2016
 Total Scan time:  1.920 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]