FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1370, 249 aa
  1>>>pF1KE1370 249 - 249 aa - 249 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9486+/-0.000408; mu= 15.8881+/- 0.025
 mean_var=54.1561+/-10.810, 0's: 0 Z-trim(111.0): 16  B-trim: 124 in 1/57
 Lambda= 0.174281
 statistics sampled from 19421 (19430) to 19421 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.612), E-opt: 0.2 (0.228), width:  16
 Scan time:  6.370

The best scores are:                                      opt bits E(85289)
NP_000356 (OMIM: 190450,615512) triosephosphate is ( 249) 1649 422.6 3.1e-118
NP_001152759 (OMIM: 190450,615512) triosephosphate ( 286) 1649 422.7 3.5e-118
NP_001244955 (OMIM: 190450,615512) triosephosphate ( 167) 1096 283.5 1.6e-76


>>NP_000356 (OMIM: 190450,615512) triosephosphate isomer  (249 aa)
 initn: 1649 init1: 1649 opt: 1649  Z-score: 2243.6  bits: 422.6 E(85289): 3.1e-118
Smith-Waterman score: 1649; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:1-249)

               10        20        30        40        50        60
pF1KE1 MAPSRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MAPSRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 AVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 AVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 QAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 QAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE
              190       200       210       220       230       240

                
pF1KE1 FVDIINAKQ
       :::::::::
NP_000 FVDIINAKQ
                

>>NP_001152759 (OMIM: 190450,615512) triosephosphate iso  (286 aa)
 initn: 1649 init1: 1649 opt: 1649  Z-score: 2242.7  bits: 422.7 E(85289): 3.5e-118
Smith-Waterman score: 1649; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:38-286)

                                             10        20        30
pF1KE1                               MAPSRKFFVGGNWKMNGRKQSLGELIGTLN
                                     ::::::::::::::::::::::::::::::
NP_001 AEFHFAALYISGQWPRLRADTDLQRLGSSAMAPSRKFFVGGNWKMNGRKQSLGELIGTLN
        10        20        30        40        50        60       

               40        50        60        70        80        90
pF1KE1 AAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGAT
        70        80        90       100       110       120       

              100       110       120       130       140       150
pF1KE1 WVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKV
       130       140       150       160       170       180       

              160       170       180       190       200       210
pF1KE1 IADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYG
       190       200       210       220       230       240       

              220       230       240         
pF1KE1 GSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ
       :::::::::::::::::::::::::::::::::::::::
NP_001 GSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ
       250       260       270       280      

>>NP_001244955 (OMIM: 190450,615512) triosephosphate iso  (167 aa)
 initn: 1096 init1: 1096 opt: 1096  Z-score: 1494.8  bits: 283.5 E(85289): 1.6e-76
Smith-Waterman score: 1096; 100.0% identity (100.0% similar) in 167 aa overlap (83-249:1-167)

             60        70        80        90       100       110  
pF1KE1 RQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQ
                                     ::::::::::::::::::::::::::::::
NP_001                               MIKDCGATWVVLGHSERRHVFGESDELIGQ
                                             10        20        30

            120       130       140       150       160       170  
pF1KE1 KVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIG
               40        50        60        70        80        90

            180       190       200       210       220       230  
pF1KE1 TGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLV
              100       110       120       130       140       150

            240         
pF1KE1 GGASLKPEFVDIINAKQ
       :::::::::::::::::
NP_001 GGASLKPEFVDIINAKQ
              160       




249 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:11:09 2016 done: Mon Nov  7 02:11:10 2016
 Total Scan time:  6.370 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]