FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6202, 189 aa
  1>>>pF1KE6202 189 - 189 aa - 189 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3597+/-0.000671; mu= 12.0931+/- 0.040
 mean_var=55.9425+/-11.077, 0's: 0 Z-trim(108.7): 22  B-trim: 7 in 1/49
 Lambda= 0.171476
 statistics sampled from 10345 (10356) to 10345 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.318), width:  16
 Scan time:  1.470

The best scores are:                                      opt bits E(32554)
CCDS33925.1 APOD gene_id:347|Hs108|chr3            ( 189) 1276 323.3 5.4e-89


>>CCDS33925.1 APOD gene_id:347|Hs108|chr3                 (189 aa)
 initn: 1276 init1: 1276 opt: 1276  Z-score: 1711.2  bits: 323.3 E(32554): 5.4e-89
Smith-Waterman score: 1276; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KE6 MVMLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MVMLLLLLSALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 CIQANYSLMENGKIKVLNQELRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMPSAPYWI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CIQANYSLMENGKIKVLNQELRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMPSAPYWI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LATDYENYALVYSCTCIIQLFHVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LATDYENYALVYSCTCIIQLFHVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVT
              130       140       150       160       170       180

                
pF1KE6 DQVNCPKLS
       :::::::::
CCDS33 DQVNCPKLS
                




189 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:03:03 2016 done: Tue Nov  8 11:03:03 2016
 Total Scan time:  1.470 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]