Result of FASTA (omim) for
pFN21AB6318
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6318, 281 aa
1>>>pF1KB6318 281 - 281 aa - 281 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4909+/-0.000327; mu= 15.2085+/- 0.020
mean_var=79.2712+/-16.419, 0's: 0 Z-trim(115.8): 39 B-trim: 1289 in 1/55
Lambda= 0.144051
statistics sampled from 26457 (26495) to 26457 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.697), E-opt: 0.2 (0.311), width: 16
Scan time: 7.040
The best scores are: opt bits E(85289)
NP_056286 (OMIM: 609174) kinetochore-associated pr ( 281) 1878 399.5 3.7e-111
XP_016856457 (OMIM: 609174) PREDICTED: kinetochore ( 178) 1190 256.4 2.9e-68
XP_016856458 (OMIM: 609174) PREDICTED: kinetochore ( 178) 1190 256.4 2.9e-68
NP_001284666 (OMIM: 609174) kinetochore-associated ( 172) 1109 239.5 3.3e-63
NP_001284668 (OMIM: 609174) kinetochore-associated ( 178) 1109 239.5 3.3e-63
NP_001036014 (OMIM: 609174) kinetochore-associated ( 213) 1109 239.6 3.9e-63
NP_001284665 (OMIM: 609174) kinetochore-associated ( 240) 970 210.7 2.1e-54
>>NP_056286 (OMIM: 609174) kinetochore-associated protei (281 aa)
initn: 1878 init1: 1878 opt: 1878 Z-score: 2116.6 bits: 399.5 E(85289): 3.7e-111
Smith-Waterman score: 1878; 99.3% identity (99.6% similar) in 281 aa overlap (1-281:1-281)
10 20 30 40 50 60
pF1KB6 MAGFPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL
::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MAGSPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 DIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHMENLKCRGETV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 DIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHMENLKCRGETV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 AKEISEAMKSLPALIEQGEGFSQVLRMQPVIHLQRIHQEVFSSCHRKPDAKPENFITQIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 AKEISEAMKSLPALIEQGEGFSQVLRMQPVIHLQRIHQEVFSSCHRKPDAKPENFITQIE
190 200 210 220 230 240
250 260 270 280
pF1KB6 TTPTETASRKTSDVVLKRKQTKDCPQRKWYPLRPKKINLDT
:::::::::::::.:::::::::::::::::::::::::::
NP_056 TTPTETASRKTSDMVLKRKQTKDCPQRKWYPLRPKKINLDT
250 260 270 280
>>XP_016856457 (OMIM: 609174) PREDICTED: kinetochore-ass (178 aa)
initn: 1190 init1: 1190 opt: 1190 Z-score: 1346.6 bits: 256.4 E(85289): 2.9e-68
Smith-Waterman score: 1190; 99.4% identity (100.0% similar) in 178 aa overlap (104-281:1-178)
80 90 100 110 120 130
pF1KB6 RDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIVDIATKRKQYPRKI
::::::::::::::::::::::::::::::
XP_016 MDSDIKVLEDQFDEIIVDIATKRKQYPRKI
10 20 30
140 150 160 170 180 190
pF1KB6 LECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHMENLKCRGETVAKEISEAMKSLPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHMENLKCRGETVAKEISEAMKSLPA
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB6 LIEQGEGFSQVLRMQPVIHLQRIHQEVFSSCHRKPDAKPENFITQIETTPTETASRKTSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIEQGEGFSQVLRMQPVIHLQRIHQEVFSSCHRKPDAKPENFITQIETTPTETASRKTSD
100 110 120 130 140 150
260 270 280
pF1KB6 VVLKRKQTKDCPQRKWYPLRPKKINLDT
.:::::::::::::::::::::::::::
XP_016 MVLKRKQTKDCPQRKWYPLRPKKINLDT
160 170
>>XP_016856458 (OMIM: 609174) PREDICTED: kinetochore-ass (178 aa)
initn: 1190 init1: 1190 opt: 1190 Z-score: 1346.6 bits: 256.4 E(85289): 2.9e-68
Smith-Waterman score: 1190; 99.4% identity (100.0% similar) in 178 aa overlap (104-281:1-178)
80 90 100 110 120 130
pF1KB6 RDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIVDIATKRKQYPRKI
::::::::::::::::::::::::::::::
XP_016 MDSDIKVLEDQFDEIIVDIATKRKQYPRKI
10 20 30
140 150 160 170 180 190
pF1KB6 LECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHMENLKCRGETVAKEISEAMKSLPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHMENLKCRGETVAKEISEAMKSLPA
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB6 LIEQGEGFSQVLRMQPVIHLQRIHQEVFSSCHRKPDAKPENFITQIETTPTETASRKTSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIEQGEGFSQVLRMQPVIHLQRIHQEVFSSCHRKPDAKPENFITQIETTPTETASRKTSD
100 110 120 130 140 150
260 270 280
pF1KB6 VVLKRKQTKDCPQRKWYPLRPKKINLDT
.:::::::::::::::::::::::::::
XP_016 MVLKRKQTKDCPQRKWYPLRPKKINLDT
160 170
>>NP_001284666 (OMIM: 609174) kinetochore-associated pro (172 aa)
initn: 1109 init1: 1109 opt: 1109 Z-score: 1255.9 bits: 239.5 E(85289): 3.3e-63
Smith-Waterman score: 1109; 99.4% identity (99.4% similar) in 166 aa overlap (1-166:1-166)
10 20 30 40 50 60
pF1KB6 MAGFPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL
::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGSPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 DIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHMENLKCRGETV
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPVLACIN
130 140 150 160 170
190 200 210 220 230 240
pF1KB6 AKEISEAMKSLPALIEQGEGFSQVLRMQPVIHLQRIHQEVFSSCHRKPDAKPENFITQIE
>>NP_001284668 (OMIM: 609174) kinetochore-associated pro (178 aa)
initn: 1109 init1: 1109 opt: 1109 Z-score: 1255.7 bits: 239.5 E(85289): 3.3e-63
Smith-Waterman score: 1109; 99.4% identity (99.4% similar) in 166 aa overlap (1-166:1-166)
10 20 30 40 50 60
pF1KB6 MAGFPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL
::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGSPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 DIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHMENLKCRGETV
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPGAKPGGLALGAV
130 140 150 160 170
190 200 210 220 230 240
pF1KB6 AKEISEAMKSLPALIEQGEGFSQVLRMQPVIHLQRIHQEVFSSCHRKPDAKPENFITQIE
>>NP_001036014 (OMIM: 609174) kinetochore-associated pro (213 aa)
initn: 1109 init1: 1109 opt: 1109 Z-score: 1254.6 bits: 239.6 E(85289): 3.9e-63
Smith-Waterman score: 1109; 99.4% identity (99.4% similar) in 166 aa overlap (1-166:1-166)
10 20 30 40 50 60
pF1KB6 MAGFPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL
::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGSPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 DIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHMENLKCRGETV
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPVLNGNAFNFSPFNM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 AKEISEAMKSLPALIEQGEGFSQVLRMQPVIHLQRIHQEVFSSCHRKPDAKPENFITQIE
NP_001 MLAVDLSYMVFITSSPSYGKFEMQRGNSSKGDQ
190 200 210
>>NP_001284665 (OMIM: 609174) kinetochore-associated pro (240 aa)
initn: 1574 init1: 970 opt: 970 Z-score: 1097.7 bits: 210.7 E(85289): 2.1e-54
Smith-Waterman score: 1496; 84.7% identity (85.1% similar) in 281 aa overlap (1-281:1-240)
10 20 30 40 50 60
pF1KB6 MAGFPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL
::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGSPELVVLDPPWDKELAAGTESQALVSATPREDFRVRCTSKRAVTEMLQLCGRFVQKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDALPEEIREPALRDAQWTFESAVQENISINGQAWQEASDNCFMDSDIKVLEDQFDEIIV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 DIATKRKQYPRKILECVIKTIKAKQEILKQYHPVVHPLDLKYDPDPAPHMENLKCRGETV
::::::::::::::::::::::::::::
NP_001 DIATKRKQYPRKILECVIKTIKAKQEIL--------------------------------
130 140
190 200 210 220 230 240
pF1KB6 AKEISEAMKSLPALIEQGEGFSQVLRMQPVIHLQRIHQEVFSSCHRKPDAKPENFITQIE
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ---------SLPALIEQGEGFSQVLRMQPVIHLQRIHQEVFSSCHRKPDAKPENFITQIE
150 160 170 180 190
250 260 270 280
pF1KB6 TTPTETASRKTSDVVLKRKQTKDCPQRKWYPLRPKKINLDT
:::::::::::::.:::::::::::::::::::::::::::
NP_001 TTPTETASRKTSDMVLKRKQTKDCPQRKWYPLRPKKINLDT
200 210 220 230 240
281 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 07:33:52 2016 done: Sat Nov 5 07:33:53 2016
Total Scan time: 7.040 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]