Result of FASTA (omim) for
pFN21AE6117
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6117, 133 aa
1>>>pF1KE6117 133 - 133 aa - 133 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1931+/-0.000272; mu= 12.0638+/- 0.017
mean_var=60.6446+/-12.202, 0's: 0 Z-trim(119.1): 22 B-trim: 1797 in 1/54
Lambda= 0.164694
statistics sampled from 32646 (32668) to 32646 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.383), width: 16
Scan time: 4.550
The best scores are: opt bits E(85289)
NP_066362 (OMIM: 605579,614680) interferon-induced ( 133) 894 219.8 1e-57
NP_006426 (OMIM: 605578) interferon-induced transm ( 132) 802 198.0 3.8e-51
NP_003632 (OMIM: 604456) interferon-induced transm ( 125) 569 142.6 1.7e-34
NP_001020466 (OMIM: 610967,614757) interferon-indu ( 132) 265 70.4 9.7e-13
NP_660282 (OMIM: 128200,614386) proline-rich trans ( 340) 142 41.4 0.0014
XP_016878377 (OMIM: 128200,614386) PREDICTED: prol ( 340) 142 41.4 0.0014
XP_016878378 (OMIM: 128200,614386) PREDICTED: prol ( 340) 137 40.2 0.0031
XP_016878376 (OMIM: 128200,614386) PREDICTED: prol ( 346) 137 40.2 0.0032
XP_011544017 (OMIM: 128200,614386) PREDICTED: prol ( 394) 137 40.2 0.0035
XP_011544018 (OMIM: 128200,614386) PREDICTED: prol ( 394) 137 40.2 0.0035
NP_001243371 (OMIM: 128200,614386) proline-rich tr ( 394) 137 40.2 0.0035
>>NP_066362 (OMIM: 605579,614680) interferon-induced tra (133 aa)
initn: 894 init1: 894 opt: 894 Z-score: 1157.4 bits: 219.8 E(85289): 1e-57
Smith-Waterman score: 894; 100.0% identity (100.0% similar) in 133 aa overlap (1-133:1-133)
10 20 30 40 50 60
pF1KE6 MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 SLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 SLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIL
70 80 90 100 110 120
130
pF1KE6 LIVIPVLIFQAYG
:::::::::::::
NP_066 LIVIPVLIFQAYG
130
>>NP_006426 (OMIM: 605578) interferon-induced transmembr (132 aa)
initn: 774 init1: 774 opt: 802 Z-score: 1039.3 bits: 198.0 E(85289): 3.8e-51
Smith-Waterman score: 802; 91.6% identity (96.2% similar) in 131 aa overlap (1-131:1-130)
10 20 30 40 50 60
pF1KE6 MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVW
::: :::: :::::::::::::::::.:::.::.::::::: ::::::::::::::::::
NP_006 MNHIVQTF-SPVNSGQPPNYEMLKEEQEVAMLGVPHNPAPPMSTVIHIRSETSVPDHVVW
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 SLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIL
::::::::: :::::::::::::::::::::::::::::::::::::::::::::.::::
NP_006 SLFNTLFMNTCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGIFMTIL
60 70 80 90 100 110
130
pF1KE6 LIVIPVLIFQAYG
::.::::. ::
NP_006 LIIIPVLVVQAQR
120 130
>>NP_003632 (OMIM: 604456) interferon-induced transmembr (125 aa)
initn: 590 init1: 564 opt: 569 Z-score: 740.5 bits: 142.6 E(85289): 1.7e-34
Smith-Waterman score: 569; 83.3% identity (90.7% similar) in 108 aa overlap (22-129:1-106)
10 20 30 40 50 60
pF1KE6 MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVW
: :::::::::::: . : ::::.:.:::::::::::
NP_003 MHKEEHEVAVLGAPPSTILPRSTVINIHSETSVPDHVVW
10 20 30
70 80 90 100 110 120
pF1KE6 SLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIL
:::::::.: :::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SLFNTLFLNWCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIG
40 50 60 70 80 90
130
pF1KE6 LIVIPVLIFQAYG
.:.. :.:
NP_003 FILL--LVFGSVTVYHIMLQIIQEKRGY
100 110 120
>>NP_001020466 (OMIM: 610967,614757) interferon-induced (132 aa)
initn: 307 init1: 260 opt: 265 Z-score: 349.7 bits: 70.4 E(85289): 9.7e-13
Smith-Waterman score: 277; 44.0% identity (69.0% similar) in 100 aa overlap (27-122:21-105)
10 20 30 40 50 60
pF1KE6 MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVW
: . .::::: : :: ::..:
NP_001 MDTAYPREDTRAPTPSKAGAHTALTLGAPH-P-PPR-------------DHLIW
10 20 30
70 80 90 100 110
pF1KE6 SLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNI----WALILGIL
:.:.::..: :::::.:.:::.:.::.:.:::. .:. ..: ::: :: :.:. .:
NP_001 SVFSTLYLNLCCLGFLALAYSIKARDQKVVGDLEAARRFGSKAKCYNILAAMWTLVPPLL
40 50 60 70 80 90
120 130
pF1KE6 MTILLIVIPVLIFQAYG
. :..
NP_001 LLGLVVTGALHLARLAKDSAAFFSTKFDDADYD
100 110 120 130
>>NP_660282 (OMIM: 128200,614386) proline-rich transmemb (340 aa)
initn: 192 init1: 131 opt: 142 Z-score: 185.5 bits: 41.4 E(85289): 0.0014
Smith-Waterman score: 170; 29.6% identity (54.9% similar) in 142 aa overlap (3-130:201-340)
10 20 30
pF1KE6 MNHTVQTFFSPVNSGQPPNY-EMLKEEHEVAV
:. . :: .: :: ..: :: ..
NP_660 LSESVGEKQENGAVVPLQAGDGEEGPAPEPHSPPSKKSPPANGAPPRVLQQLVEEDRMRR
180 190 200 210 220 230
40 50 60 70
pF1KE6 LGAPHNPAPPTSTVIHIRSETSVP------------DHVVWSLFNTLF-MNPCCLGFIAF
. : .: : : :. . : :... .... . : : ....::
NP_660 AHSGHPGSPRGSLSRHPSSQLAGPGVEGGEGTQKPRDYIILAILSCFCPMWP--VNIVAF
240 250 260 270 280
80 90 100 110 120 130
pF1KE6 AYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTILLIVIPVLIFQAYG
::.: ::. . ::: ::: . .:: :.: ::. :.:. : :: . ...
NP_660 AYAVMSRNSLQQGDVDGAQRLGRVAKLLSIVALVGGVLIIIASCVINLGVYK
290 300 310 320 330 340
>>XP_016878377 (OMIM: 128200,614386) PREDICTED: proline- (340 aa)
initn: 192 init1: 131 opt: 142 Z-score: 185.5 bits: 41.4 E(85289): 0.0014
Smith-Waterman score: 170; 29.6% identity (54.9% similar) in 142 aa overlap (3-130:201-340)
10 20 30
pF1KE6 MNHTVQTFFSPVNSGQPPNY-EMLKEEHEVAV
:. . :: .: :: ..: :: ..
XP_016 LSESVGEKQENGAVVPLQAGDGEEGPAPEPHSPPSKKSPPANGAPPRVLQQLVEEDRMRR
180 190 200 210 220 230
40 50 60 70
pF1KE6 LGAPHNPAPPTSTVIHIRSETSVP------------DHVVWSLFNTLF-MNPCCLGFIAF
. : .: : : :. . : :... .... . : : ....::
XP_016 AHSGHPGSPRGSLSRHPSSQLAGPGVEGGEGTQKPRDYIILAILSCFCPMWP--VNIVAF
240 250 260 270 280
80 90 100 110 120 130
pF1KE6 AYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTILLIVIPVLIFQAYG
::.: ::. . ::: ::: . .:: :.: ::. :.:. : :: . ...
XP_016 AYAVMSRNSLQQGDVDGAQRLGRVAKLLSIVALVGGVLIIIASCVINLGVYK
290 300 310 320 330 340
>>XP_016878378 (OMIM: 128200,614386) PREDICTED: proline- (340 aa)
initn: 192 init1: 131 opt: 137 Z-score: 179.0 bits: 40.2 E(85289): 0.0031
Smith-Waterman score: 165; 30.9% identity (54.4% similar) in 136 aa overlap (3-124:201-334)
10 20 30
pF1KE6 MNHTVQTFFSPVNSGQPPNY-EMLKEEHEVAV
:. . :: .: :: ..: :: ..
XP_016 LSESVGEKQENGAVVPLQAGDGEEGPAPEPHSPPSKKSPPANGAPPRVLQQLVEEDRMRR
180 190 200 210 220 230
40 50 60 70
pF1KE6 LGAPHNPAPPTSTVIHIRSETSVP------------DHVVWSLFNTLF-MNPCCLGFIAF
. : .: : : :. . : :... .... . : : ....::
XP_016 AHSGHPGSPRGSLSRHPSSQLAGPGVEGGEGTQKPRDYIILAILSCFCPMWP--VNIVAF
240 250 260 270 280
80 90 100 110 120 130
pF1KE6 AYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTILLIVIPVLIFQAYG
::.: ::. . ::: ::: . .:: :.: ::. :.:. : ::
XP_016 AYAVMSRNSLQQGDVDGAQRLGRVAKLLSIVALVGGVLIIIASCVINLGDAA
290 300 310 320 330 340
>>XP_016878376 (OMIM: 128200,614386) PREDICTED: proline- (346 aa)
initn: 192 init1: 131 opt: 137 Z-score: 178.9 bits: 40.2 E(85289): 0.0032
Smith-Waterman score: 165; 30.9% identity (54.4% similar) in 136 aa overlap (3-124:201-334)
10 20 30
pF1KE6 MNHTVQTFFSPVNSGQPPNY-EMLKEEHEVAV
:. . :: .: :: ..: :: ..
XP_016 LSESVGEKQENGAVVPLQAGDGEEGPAPEPHSPPSKKSPPANGAPPRVLQQLVEEDRMRR
180 190 200 210 220 230
40 50 60 70
pF1KE6 LGAPHNPAPPTSTVIHIRSETSVP------------DHVVWSLFNTLF-MNPCCLGFIAF
. : .: : : :. . : :... .... . : : ....::
XP_016 AHSGHPGSPRGSLSRHPSSQLAGPGVEGGEGTQKPRDYIILAILSCFCPMWP--VNIVAF
240 250 260 270 280
80 90 100 110 120 130
pF1KE6 AYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTILLIVIPVLIFQAYG
::.: ::. . ::: ::: . .:: :.: ::. :.:. : ::
XP_016 AYAVMSRNSLQQGDVDGAQRLGRVAKLLSIVALVGGVLIIIASCVINLGGCCMSLKHQ
290 300 310 320 330 340
>>XP_011544017 (OMIM: 128200,614386) PREDICTED: proline- (394 aa)
initn: 192 init1: 131 opt: 137 Z-score: 178.1 bits: 40.2 E(85289): 0.0035
Smith-Waterman score: 165; 30.9% identity (54.4% similar) in 136 aa overlap (3-124:201-334)
10 20 30
pF1KE6 MNHTVQTFFSPVNSGQPPNY-EMLKEEHEVAV
:. . :: .: :: ..: :: ..
XP_011 LSESVGEKQENGAVVPLQAGDGEEGPAPEPHSPPSKKSPPANGAPPRVLQQLVEEDRMRR
180 190 200 210 220 230
40 50 60 70
pF1KE6 LGAPHNPAPPTSTVIHIRSETSVP------------DHVVWSLFNTLF-MNPCCLGFIAF
. : .: : : :. . : :... .... . : : ....::
XP_011 AHSGHPGSPRGSLSRHPSSQLAGPGVEGGEGTQKPRDYIILAILSCFCPMWP--VNIVAF
240 250 260 270 280
80 90 100 110 120 130
pF1KE6 AYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTILLIVIPVLIFQAYG
::.: ::. . ::: ::: . .:: :.: ::. :.:. : ::
XP_011 AYAVMSRNSLQQGDVDGAQRLGRVAKLLSIVALVGGVLIIIASCVINLGGEWGLGTGRGG
290 300 310 320 330 340
XP_011 MEGLARAALLTPAPALSCLSSLPLLCLSLSPPPPVCPSLSSPTVYK
350 360 370 380 390
>>XP_011544018 (OMIM: 128200,614386) PREDICTED: proline- (394 aa)
initn: 192 init1: 131 opt: 137 Z-score: 178.1 bits: 40.2 E(85289): 0.0035
Smith-Waterman score: 165; 30.9% identity (54.4% similar) in 136 aa overlap (3-124:201-334)
10 20 30
pF1KE6 MNHTVQTFFSPVNSGQPPNY-EMLKEEHEVAV
:. . :: .: :: ..: :: ..
XP_011 LSESVGEKQENGAVVPLQAGDGEEGPAPEPHSPPSKKSPPANGAPPRVLQQLVEEDRMRR
180 190 200 210 220 230
40 50 60 70
pF1KE6 LGAPHNPAPPTSTVIHIRSETSVP------------DHVVWSLFNTLF-MNPCCLGFIAF
. : .: : : :. . : :... .... . : : ....::
XP_011 AHSGHPGSPRGSLSRHPSSQLAGPGVEGGEGTQKPRDYIILAILSCFCPMWP--VNIVAF
240 250 260 270 280
80 90 100 110 120 130
pF1KE6 AYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTILLIVIPVLIFQAYG
::.: ::. . ::: ::: . .:: :.: ::. :.:. : ::
XP_011 AYAVMSRNSLQQGDVDGAQRLGRVAKLLSIVALVGGVLIIIASCVINLGGEWGLGTGRGG
290 300 310 320 330 340
XP_011 MEGLARAALLTPAPALSCLSSLPLLCLSLSPPPPVCPSLSSPTVYK
350 360 370 380 390
133 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 09:35:46 2016 done: Tue Nov 8 09:35:46 2016
Total Scan time: 4.550 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]