Restriction map for
pFN21AB3398
(Circular) (Six-base) MAPSORT of: pFN21AB3398.seq Check: 4117 from: 1 to: 5158
pFN21AB3398 5158 bp
With 182 enzymes: SgfI *
October 20, 2009 10:53 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 2968 278
Size: 53 83 186 936 1432 2468
Fragments arranged by size:
2468 1432 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2501 1937
Size: 564 4594
Acc65I G'GTAC_C
Cuts at: 2479 2479
Size: 5158
AclI AA'CG_TT
Cuts at: 1563 3285 3658 1563
Size: 1722 373 3063
Fragments arranged by size:
3063 1722 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2280 3221 4605 4873 1632
Size: 648 941 1384 268 1917
Fragments arranged by size:
1917 1384 941 648 268
AflII C'TTAA_G
Cuts at: 820 1017 2228 820
Size: 197 1211 3750
Fragments arranged by size:
3750 1211 197
AflIII A'CryG_T
Cuts at: 1203 4057 5034 1203
Size: 2854 977 1327
Fragments arranged by size:
2854 1327 977
AgeI A'CCGG_T
Cuts at: 3989 3989
Size: 5158
AhdI GACnn_n'nnGTC
Cuts at: 2066 3887 2066
Size: 1821 3337
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5158
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5158
AlwNI CAG_nnn'CTG
Cuts at: 2294 2444 2901 4473 2294
Size: 150 457 1572 2979
Fragments arranged by size:
2979 1572 457 150
ApaLI G'TGCA_C
Cuts at: 3215 4371 3215
Size: 1156 4002
ApoI r'AATT_y
Cuts at: 1493 2214 2223 2339 2467 2693 2845 4954 1493
Size: 721 9 116 128 226 152 2109 1697
Fragments arranged by size:
2109 1697 721 226 152 128 116 9
AseI AT'TA_AT
Cuts at: 160 1032 3712 160
Size: 872 2680 1606
Fragments arranged by size:
2680 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5158
AvaI C'yCGr_G
Cuts at: 1870 1943 2024 2483 1870
Size: 73 81 459 4545
Fragments arranged by size:
4545 459 81 73
BamHI G'GATC_C
Cuts at: 2488 2855 2488
Size: 367 4791
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2479 3934 618
Size: 325 217 627 692 1455 1842
Fragments arranged by size:
1842 1455 692 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2477 1391
Size: 1086 4072
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4187
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3349 3383 1903
Size: 34 1412 34 3678
Fragments arranged by size:
3678 1412 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3050 4260 3050
Size: 1210 3948
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5158
BfrBI ATG'CAT
Cuts at: 2017 2017
Size: 5158
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3769 136
Size: 107 122 71 631 605 2097 1525
Fragments arranged by size:
2097 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 2263 5153 2263
Size: 2890 2268
BlpI GC'TnA_GC
Cuts at: 2575 2575
Size: 5158
Bme1580I G_kGCm'C
Cuts at: 1790 3219 4375 1790
Size: 1429 1156 2573
Fragments arranged by size:
2573 1429 1156
BmgBI CAC'GTC
Cuts at: 1318 2101 1318
Size: 783 4375
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2035 2889 3847
Size: 416 53 83 399 24 618 854 958
Cuts at: 3847 442
Size: 1753
Fragments arranged by size:
1753 958 854 618 416 399 83 53
24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5158
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 3818 1239
Size: 2579 2579
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 2330 3283 4148 4446 2330
Size: 953 865 298 3042
Fragments arranged by size:
3042 953 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3821 882
Size: 617 2322 2219
Fragments arranged by size:
2322 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 2949 493
Size: 711 1745 2702
Fragments arranged by size:
2702 1745 711
BsaBI GATnn'nnATC
Cuts at: 5152 5152
Size: 5158
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2965 3347 3982 275
Size: 53 83 186 936 1432 382 635 1451
Fragments arranged by size:
1451 1432 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3591 3989 4263 4410 4821 3591
Size: 398 274 147 411 3928
Fragments arranged by size:
3928 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 4933
Fragments arranged by size:
4933 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5158
BseYI C'CCAG_C
Cuts at: 4361 4857 4361
Size: 496 4662
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4585
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2608 3369 4397 1540
Size: 275 186 607 761 1028 2301
Fragments arranged by size:
2301 1028 761 607 275 186
BsiHKAI G_wGCw'C
Cuts at: 3219 3304 4375 3219
Size: 85 1071 4002
Fragments arranged by size:
4002 1071 85
BsmI GAATG_Cn'
Cuts at: 2669 2762 2669
Size: 93 5065
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2477 3219 3304 4375 1391
Size: 399 687 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 687 399 85
BspEI T'CCGG_A
Cuts at: 4821 4821
Size: 5158
BspHI T'CATG_A
Cuts at: 3047 4777 3047
Size: 1730 3428
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2513 844
Size: 1669 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3045 1394
Size: 429 1222 3507
Fragments arranged by size:
3507 1222 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3653 3827 65
Size: 1183 2405 174 1396
Fragments arranged by size:
2405 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3802 3989 1700
Size: 110 1992 187 2869
Fragments arranged by size:
2869 1992 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5158
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5158
BssSI C'ACGA_G
Cuts at: 3218 4230 3218
Size: 1012 4146
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5158
BstBI TT'CG_AA
Cuts at: 2299 3962 2299
Size: 1663 3495
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5158
BstYI r'GATC_y
Cuts at: 1972 2263 2488 2855 3240 3257 4709 4795 4807
Size: 291 225 367 385 17 1452 86 12
Cuts at: 4807 5153 1972
Size: 346 1977
Fragments arranged by size:
1977 1452 385 367 346 291 225 86
17 12
BtgI C'CryG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3667
Fragments arranged by size:
3667 939 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4419
Fragments arranged by size:
4419 683 56
BtsI GCAGTG_nn'
Cuts at: 2674 3468 3488 2674
Size: 794 20 4344
Fragments arranged by size:
4344 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5158
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5123
DraI TTT'AAA
Cuts at: 2462 2462
Size: 5158
DraIII CAC_nnn'GTG
Cuts at: 2180 2180
Size: 5158
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4165 809
Size: 507 2849 1802
Fragments arranged by size:
2849 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2124 2605 3494
Size: 54 1425 50 275 18 294 481 889
Cuts at: 3494 5123 8
Size: 1629 43
Fragments arranged by size:
1629 1425 889 481 294 275 54 50
43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2605 1537
Size: 275 793 4090
Fragments arranged by size:
4090 793 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3088 1353
Size: 1735 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3745 4119 4265 387
Size: 1064 138 2156 374 146 1280
Fragments arranged by size:
2156 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2280 3221 3818 4605 4873 1239
Size: 393 648 941 597 787 268 1524
Fragments arranged by size:
1524 941 787 648 597 393 268
EcoO109I rG'GnC_Cy
Cuts at: 2032 2134 2032
Size: 102 5056
EcoRI G'AATT_C
Cuts at: 2223 2467 2845 2223
Size: 244 378 4536
Fragments arranged by size:
4536 378 244
FspI TGC'GCA
Cuts at: 3664 3664
Size: 5158
HaeII r_GCGC'y
Cuts at: 1678 4305 1678
Size: 2627 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2052 2084 3799 3831 3873
Size: 32 135 32 480 32 1715 32 42
Cuts at: 3873 3905 1373
Size: 32 2626
Fragments arranged by size:
2626 1715 480 135 42 32 32 32
32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2088 2502 2748 669
Size: 988 281 150 414 246 3079
Fragments arranged by size:
3079 988 414 281 246 150
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5158
HpaI GTT'AAC
Cuts at: 2748 2748
Size: 5158
KpnI G_GTAC'C
Cuts at: 2483 2483
Size: 5158
MfeI C'AATT_G
Cuts at: 2416 2757 2416
Size: 341 4817
MluI A'CGCG_T
Cuts at: 5034 5034
Size: 5158
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4272 4456 1305
Size: 2967 184 2007
Fragments arranged by size:
2967 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2126 10
Size: 54 1425 343 294 3042
Fragments arranged by size:
3042 1425 343 294 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3116 3475 3634 518
Size: 648 1950 359 159 2042
Fragments arranged by size:
2042 1950 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2574 3251 4399 4644 1606
Size: 968 677 1148 245 2120
Fragments arranged by size:
2120 1148 968 677 245
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3667
Fragments arranged by size:
3667 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5158
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5158
NotI GC'GGCC_GC
Cuts at: 2605 2605
Size: 5158
NsiI A_TGCA'T
Cuts at: 2019 2019
Size: 5158
NspI r_CATG'y
Cuts at: 1132 1229 2017 2021 2516 4061 1132
Size: 97 788 4 495 1545 2229
Fragments arranged by size:
2229 1545 788 495 97 4
PacI TTA_AT'TAA
Cuts at: 2280 2280
Size: 5158
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5158
PciI A'CATG_T
Cuts at: 4057 4057
Size: 5158
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5158
PmeI GTTT'AAAC
Cuts at: 2462 2462
Size: 5158
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3227 3259 4740 4772 3227
Size: 32 1481 32 3613
Fragments arranged by size:
3613 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5158
PsiI TTA'TAA
Cuts at: 2391 2728 2391
Size: 337 4821
PstI C_TGCA'G
Cuts at: 830 2510 830
Size: 1680 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5158
SalI G'TCGA_C
Cuts at: 1936 2500 1936
Size: 564 4594
SbfI CC_TGCA'GG
Cuts at: 2510 2510
Size: 5158
ScaI AGT'ACT
Cuts at: 3406 5118 3406
Size: 1712 3446
SfcI C'TryA_G
Cuts at: 826 1045 2436 2506 3641 4322 4513 826
Size: 219 1391 70 1135 681 191 1471
Fragments arranged by size:
1471 1391 1135 681 219 191 70
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5158
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5158
SmaI CCC'GGG
Cuts at: 1872 2026 2485 1872
Size: 154 459 4545
Fragments arranged by size:
4545 459 154
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2228 2309 3262 4163 4425 820
Size: 197 926 285 81 953 901 262 1553
Fragments arranged by size:
1553 953 926 901 285 262 197 81
SnaBI TAC'GTA
Cuts at: 493 2949 493
Size: 2456 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5158
SphI G_CATG'C
Cuts at: 1132 2017 2021 2516 1132
Size: 885 4 495 3774
Fragments arranged by size:
3774 885 495 4
SspI AAT'ATT
Cuts at: 5 52 3082 5
Size: 47 3030 2081
Fragments arranged by size:
3030 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5158
StyI C'CwwG_G
Cuts at: 513 1065 2004 2597 513
Size: 552 939 593 3074
Fragments arranged by size:
3074 939 593 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3185 3202 3355 3540 3985 325
Size: 1255 1605 17 153 185 445 1498
Fragments arranged by size:
1605 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3404 5116 96
Size: 274 80 33 51 1443 1427 1712 138
Fragments arranged by size:
1712 1443 1427 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5118 5150 5118
Size: 32 5126
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5158
XbaI T'CTAG_A
Cuts at: 2494 2494
Size: 5158
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5158
XmaI C'CCGG_G
Cuts at: 1870 2024 2483 1870
Size: 154 459 4545
Fragments arranged by size:
4545 459 154
XmnI GAAnn'nnTTC
Cuts at: 3287 3287
Size: 5158
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 2966 276
Size: 53 83 186 936 1432 2468
Fragments arranged by size:
2468 1432 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BcgI BciVI BclI
BfrBI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI
BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI
BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI
BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI
CspCI DraI DraIII DrdI EaeI EagI EarI EciI
Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII
HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I
NcoI NdeI NheI NotI NsiI NspI PacI PasI
PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI
SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI
SnaBI SpeI SphI SspI StuI StyI TaqII TatI
TstI Tth111I XbaI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BbvCI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I
EcoICRI EcoNI EcoRV FalI FseI FspAI KasI NaeI
NarI NgoMIV NruI PfoI PmlI PpuMI PspOMI PspXI
PsrI PvuII RsrII SacI SacII SanDI SapI SexAI
SfiI SfoI SrfI SwaI XcmI