FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1371, 195 aa 1>>>pF1KE1371 195 - 195 aa - 195 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.5820+/-0.000284; mu= 0.7680+/- 0.018 mean_var=201.8209+/-40.237, 0's: 0 Z-trim(124.8): 2 B-trim: 0 in 0/62 Lambda= 0.090280 statistics sampled from 47101 (47103) to 47101 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.83), E-opt: 0.2 (0.552), width: 16 Scan time: 6.260 The best scores are: opt bits E(85289) NP_000092 (OMIM: 233690,608508) cytochrome b-245 l ( 195) 1321 183.0 2.7e-46 XP_011521207 (OMIM: 233690,608508) PREDICTED: cyto ( 210) 818 117.5 1.5e-26 >>NP_000092 (OMIM: 233690,608508) cytochrome b-245 light (195 aa) initn: 1321 init1: 1321 opt: 1321 Z-score: 952.1 bits: 183.0 E(85289): 2.7e-46 Smith-Waterman score: 1321; 99.5% identity (100.0% similar) in 195 aa overlap (1-195:1-195) 10 20 30 40 50 60 pF1KE1 MGQIEWAMWANEQALASGLILITGGIVATAGRFTQWYFGAYSIVAGVFVCLLEYPRGKRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MGQIEWAMWANEQALASGLILITGGIVATAGRFTQWYFGAYSIVAGVFVCLLEYPRGKRK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 KGSTMERWGQKYMTAVVKLFGPFTRNYYVRAVLHLLLSVPAGFLLATILGTACLAIASGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 KGSTMERWGQKYMTAVVKLFGPFTRNYYVRAVLHLLLSVPAGFLLATILGTACLAIASGI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 YLLAAVRGEQWTPIEPKPRERPQIGGTIKQPPSNPPPRPPAEARKKPSEEEAAAAAGGPP :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: NP_000 YLLAAVRGEQWTPIEPKPRERPQIGGTIKQPPSNPPPRPPAEARKKPSEEEAAVAAGGPP 130 140 150 160 170 180 190 pF1KE1 GGPQVNPIPVTDEVV ::::::::::::::: NP_000 GGPQVNPIPVTDEVV 190 >>XP_011521207 (OMIM: 233690,608508) PREDICTED: cytochro (210 aa) initn: 842 init1: 818 opt: 818 Z-score: 597.6 bits: 117.5 E(85289): 1.5e-26 Smith-Waterman score: 818; 98.4% identity (99.2% similar) in 126 aa overlap (1-126:1-126) 10 20 30 40 50 60 pF1KE1 MGQIEWAMWANEQALASGLILITGGIVATAGRFTQWYFGAYSIVAGVFVCLLEYPRGKRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MGQIEWAMWANEQALASGLILITGGIVATAGRFTQWYFGAYSIVAGVFVCLLEYPRGKRK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 KGSTMERWGQKYMTAVVKLFGPFTRNYYVRAVLHLLLSVPAGFLLATILGTACLAIASGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KGSTMERWGQKYMTAVVKLFGPFTRNYYVRAVLHLLLSVPAGFLLATILGTACLAIASGI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 YLLAAVRGEQWTPIEPKPRERPQIGGTIKQPPSNPPPRPPAEARKKPSEEEAAAAAGGPP :::. : XP_011 YLLSQVPPARRGNCPPLAVRLLVCVRGKGAALSVYAFRVWKWSSVSSLTDLPPAELSFRT 130 140 150 160 170 180 195 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:16:10 2016 done: Mon Nov 7 02:16:11 2016 Total Scan time: 6.260 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]