FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6433, 447 aa 1>>>pF1KE6433 447 - 447 aa - 447 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9994+/-0.000346; mu= 19.6266+/- 0.022 mean_var=67.1848+/-13.997, 0's: 0 Z-trim(115.3): 12 B-trim: 379 in 2/50 Lambda= 0.156473 statistics sampled from 25635 (25646) to 25635 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.673), E-opt: 0.2 (0.301), width: 16 Scan time: 8.580 The best scores are: opt bits E(85289) NP_002399 (OMIM: 212066,602616) alpha-1,6-mannosyl ( 447) 3120 713.2 3.5e-205 >>NP_002399 (OMIM: 212066,602616) alpha-1,6-mannosyl-gly (447 aa) initn: 3120 init1: 3120 opt: 3120 Z-score: 3804.6 bits: 713.2 E(85289): 3.5e-205 Smith-Waterman score: 3120; 100.0% identity (100.0% similar) in 447 aa overlap (1-447:1-447) 10 20 30 40 50 60 pF1KE6 MRFRIYKRKVLILTLVVAACGFVLWSSNGRQRKNEALAPPLLDAEPARGAGGRGGDHPSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MRFRIYKRKVLILTLVVAACGFVLWSSNGRQRKNEALAPPLLDAEPARGAGGRGGDHPSV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 AVGIRRVSNVSAASLVPAVPQPEADNLTLRYRSLVYQLNFDQTLRNVDKAGTWAPRELVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 AVGIRRVSNVSAASLVPAVPQPEADNLTLRYRSLVYQLNFDQTLRNVDKAGTWAPRELVL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 VVQVHNRPEYLRLLLDSLRKAQGIDNVLVIFSHDFWSTEINQLIAGVNFCPVLQVFFPFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 VVQVHNRPEYLRLLLDSLRKAQGIDNVLVIFSHDFWSTEINQLIAGVNFCPVLQVFFPFS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 IQLYPNEFPGSDPRDCPRDLPKNAALKLGCINAEYPDSFGHYREAKFSQTKHHWWWKLHF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 IQLYPNEFPGSDPRDCPRDLPKNAALKLGCINAEYPDSFGHYREAKFSQTKHHWWWKLHF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 VWERVKILRDYAGLILFLEEDHYLAPDFYHVFKKMWKLKQQECPECDVLSLGTYSASRSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 VWERVKILRDYAGLILFLEEDHYLAPDFYHVFKKMWKLKQQECPECDVLSLGTYSASRSF 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 YGMADKVDVKTWKSTEHNMGLALTRNAYQKLIECTDTFCTYDDYNWDWTLQYLTVSCLPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 YGMADKVDVKTWKSTEHNMGLALTRNAYQKLIECTDTFCTYDDYNWDWTLQYLTVSCLPK 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE6 FWKVLVPQIPRIFHAGDCGMHHKKTCRPSTQSAQIESLLNNNKQYMFPETLTISEKFTVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 FWKVLVPQIPRIFHAGDCGMHHKKTCRPSTQSAQIESLLNNNKQYMFPETLTISEKFTVV 370 380 390 400 410 420 430 440 pF1KE6 AISPPRKNGGWGDIRDHELCKSYRRLQ ::::::::::::::::::::::::::: NP_002 AISPPRKNGGWGDIRDHELCKSYRRLQ 430 440 447 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 13:15:31 2016 done: Tue Nov 8 13:15:32 2016 Total Scan time: 8.580 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]