FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6140, 170 aa 1>>>pF1KE6140 170 - 170 aa - 170 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.5303+/-0.000263; mu= 7.7042+/- 0.017 mean_var=94.2319+/-18.500, 0's: 0 Z-trim(121.6): 16 B-trim: 0 in 0/60 Lambda= 0.132122 statistics sampled from 38500 (38516) to 38500 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.452), width: 16 Scan time: 6.210 The best scores are: opt bits E(85289) NP_055239 (OMIM: 610692) heat shock protein beta-7 ( 170) 1108 220.1 1.3e-57 XP_011539552 (OMIM: 610692) PREDICTED: heat shock ( 262) 1090 216.8 2.1e-56 XP_011539551 (OMIM: 610692) PREDICTED: heat shock ( 263) 1088 216.4 2.7e-56 NP_001532 (OMIM: 602179) heat shock protein beta-2 ( 182) 187 44.6 9.9e-05 NP_055180 (OMIM: 158590,608014,608673) heat shock ( 196) 180 43.3 0.00027 NP_001276736 (OMIM: 123590,608810,613763,613869,61 ( 175) 178 42.9 0.00032 XP_011540910 (OMIM: 123590,608810,613763,613869,61 ( 175) 178 42.9 0.00032 NP_001276737 (OMIM: 123590,608810,613763,613869,61 ( 175) 178 42.9 0.00032 NP_001876 (OMIM: 123590,608810,613763,613869,61518 ( 175) 178 42.9 0.00032 NP_653218 (OMIM: 610695) heat shock protein beta-6 ( 160) 175 42.3 0.00043 NP_001531 (OMIM: 602195,606595,608634) heat shock ( 205) 168 41.0 0.0014 NP_001317308 (OMIM: 123590,608810,613763,613869,61 ( 108) 163 39.9 0.0015 XP_005261150 (OMIM: 123580,604219) PREDICTED: alph ( 136) 154 38.2 0.006 >>NP_055239 (OMIM: 610692) heat shock protein beta-7 [Ho (170 aa) initn: 1108 init1: 1108 opt: 1108 Z-score: 1155.1 bits: 220.1 E(85289): 1.3e-57 Smith-Waterman score: 1108; 100.0% identity (100.0% similar) in 170 aa overlap (1-170:1-170) 10 20 30 40 50 60 pF1KE6 MSHRTSSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDDFGSFMRPHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 MSHRTSSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDDFGSFMRPHS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 EPLAFPARPGGAGNIKTLGDAYEFAVDVRDFSPEDIIVTTSNNHIEVRAEKLAADGTVMN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 EPLAFPARPGGAGNIKTLGDAYEFAVDVRDFSPEDIIVTTSNNHIEVRAEKLAADGTVMN 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 TFAHKCQLPEDVDPTSVTSALREDGSLTIRARRHPHTEHVQQTFRTEIKI :::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 TFAHKCQLPEDVDPTSVTSALREDGSLTIRARRHPHTEHVQQTFRTEIKI 130 140 150 160 170 >>XP_011539552 (OMIM: 610692) PREDICTED: heat shock prot (262 aa) initn: 718 init1: 718 opt: 1090 Z-score: 1133.7 bits: 216.8 E(85289): 2.1e-56 Smith-Waterman score: 1090; 97.7% identity (97.7% similar) in 174 aa overlap (1-170:89-262) 10 20 30 pF1KE6 MSHRTSSTFRAERSFHSSSSSSSSSTSSSA :::::::::::::::::::::::::::::: XP_011 GAWHARPEACAHTLSCPALARLGRARRRPWMSHRTSSTFRAERSFHSSSSSSSSSTSSSA 60 70 80 90 100 110 40 50 60 70 80 pF1KE6 SRALPAQDPPMEKALSMFSDDFGSFMRPHSEPLAFPA----RPGGAGNIKTLGDAYEFAV ::::::::::::::::::::::::::::::::::::: ::::::::::::::::::: XP_011 SRALPAQDPPMEKALSMFSDDFGSFMRPHSEPLAFPAHPTARPGGAGNIKTLGDAYEFAV 120 130 140 150 160 170 90 100 110 120 130 140 pF1KE6 DVRDFSPEDIIVTTSNNHIEVRAEKLAADGTVMNTFAHKCQLPEDVDPTSVTSALREDGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DVRDFSPEDIIVTTSNNHIEVRAEKLAADGTVMNTFAHKCQLPEDVDPTSVTSALREDGS 180 190 200 210 220 230 150 160 170 pF1KE6 LTIRARRHPHTEHVQQTFRTEIKI :::::::::::::::::::::::: XP_011 LTIRARRHPHTEHVQQTFRTEIKI 240 250 260 >>XP_011539551 (OMIM: 610692) PREDICTED: heat shock prot (263 aa) initn: 679 init1: 679 opt: 1088 Z-score: 1131.6 bits: 216.4 E(85289): 2.7e-56 Smith-Waterman score: 1088; 97.1% identity (97.1% similar) in 175 aa overlap (1-170:89-263) 10 20 30 pF1KE6 MSHRTSSTFRAERSFHSSSSSSSSSTSSSA :::::::::::::::::::::::::::::: XP_011 GAWHARPEACAHTLSCPALARLGRARRRPWMSHRTSSTFRAERSFHSSSSSSSSSTSSSA 60 70 80 90 100 110 40 50 60 70 80 pF1KE6 SRALPAQDPPMEKALSMFSDDFGSFMRPHSEPLAFPA-----RPGGAGNIKTLGDAYEFA ::::::::::::::::::::::::::::::::::::: :::::::::::::::::: XP_011 SRALPAQDPPMEKALSMFSDDFGSFMRPHSEPLAFPAAHPTARPGGAGNIKTLGDAYEFA 120 130 140 150 160 170 90 100 110 120 130 140 pF1KE6 VDVRDFSPEDIIVTTSNNHIEVRAEKLAADGTVMNTFAHKCQLPEDVDPTSVTSALREDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VDVRDFSPEDIIVTTSNNHIEVRAEKLAADGTVMNTFAHKCQLPEDVDPTSVTSALREDG 180 190 200 210 220 230 150 160 170 pF1KE6 SLTIRARRHPHTEHVQQTFRTEIKI ::::::::::::::::::::::::: XP_011 SLTIRARRHPHTEHVQQTFRTEIKI 240 250 260 >>NP_001532 (OMIM: 602179) heat shock protein beta-2 [Ho (182 aa) initn: 166 init1: 84 opt: 187 Z-score: 205.9 bits: 44.6 E(85289): 9.9e-05 Smith-Waterman score: 187; 33.9% identity (58.9% similar) in 112 aa overlap (53-158:46-156) 30 40 50 60 70 80 pF1KE6 SSSTSSSASRALPAQDPPMEKALSMFSDDFGSFMRPHSEPLAFPARPGGAGNIKTLGDAY : ..::.. : . .: .::.... . NP_001 YEFANPSRLGEQRFGEGLLPEEILTPTLYHGYYVRPRAAPAGEGSR-AGASELRLSEGKF 20 30 40 50 60 70 90 100 110 120 130 pF1KE6 EFAVDVRDFSPEDIIVTTSNNHIEVRA---EKLAADGTVMNTFAHKCQLPEDVDPTSVTS . .:: :.:... : : .: .:: : ..: : : : . :: :::: : . NP_001 QAFLDVSHFTPDEVTVRTVDNLLEVSARHPQRLDRHGFVSREFCRTYVLPADVDPWRVRA 80 90 100 110 120 130 140 150 160 170 pF1KE6 ALREDGSLTI---RARRHPHTEHVQQTFRTEIKI :: .:: :.. :. :: :: NP_001 ALSHDGILNLEAPRGGRHLDTEVNEVYISLLPAPPDPEEEEEAAIVEP 140 150 160 170 180 >>NP_055180 (OMIM: 158590,608014,608673) heat shock prot (196 aa) initn: 189 init1: 106 opt: 180 Z-score: 198.2 bits: 43.3 E(85289): 0.00027 Smith-Waterman score: 180; 33.0% identity (70.2% similar) in 94 aa overlap (79-168:93-186) 50 60 70 80 90 100 pF1KE6 SDDFGSFMRPHSEPLAFPARPGGAGNIKTLGDAYEFAVDVRDFSPEDIIVTTSNNHIEVR :. .. :.:..:.::...: :.....:: NP_055 TLRSGMVPRGPTATARFGVPAEGRTPPPFPGEPWKVCVNVHSFKPEELMVKTKDGYVEVS 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE6 A---EKLAADGTVMNTFAHKCQLPEDVDPTSVTSALREDGSLTIRARR-HPHTEHVQQTF . :: : : ..:..: ::: .:::..: ..: .: : :.: . :.. ...: NP_055 GKHEEKQQEGGIVSKNFTKKIQLPAEVDPVTVFASLSPEGLLIIEAPQVPPYSTFGESSF 130 140 150 160 170 180 170 pF1KE6 RTEIKI .:. NP_055 NNELPQDSQEVTCT 190 >>NP_001276736 (OMIM: 123590,608810,613763,613869,615184 (175 aa) initn: 155 init1: 81 opt: 178 Z-score: 196.9 bits: 42.9 E(85289): 0.00032 Smith-Waterman score: 178; 32.5% identity (55.6% similar) in 117 aa overlap (40-153:39-149) 10 20 30 40 50 60 pF1KE6 RAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDDFGSFMRPHSEPLAFPARP : .:: : ::.: : : . NP_001 WIRRPFFPFHSPSRLFDQFFGEHLLESDLFPTSTSLSPFYLRPPSFLR---APSWFDT-- 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 GGAGNIKTLGDAYEFAVDVRDFSPEDIIVTTSNNHIEVRA---EKLAADGTVMNTFAHKC : .... : . .::. ::::.. : . .. :::.. :. : . : .: NP_001 -GLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKY 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 QLPEDVDPTSVTSALREDGSLTIRARRHPHTEHVQQTFRTEIKI ..: :::: ..::.: :: ::. . : NP_001 RIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTIPITREEKPAVTAAPKK 130 140 150 160 170 >>XP_011540910 (OMIM: 123590,608810,613763,613869,615184 (175 aa) initn: 155 init1: 81 opt: 178 Z-score: 196.9 bits: 42.9 E(85289): 0.00032 Smith-Waterman score: 178; 32.5% identity (55.6% similar) in 117 aa overlap (40-153:39-149) 10 20 30 40 50 60 pF1KE6 RAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDDFGSFMRPHSEPLAFPARP : .:: : ::.: : : . XP_011 WIRRPFFPFHSPSRLFDQFFGEHLLESDLFPTSTSLSPFYLRPPSFLR---APSWFDT-- 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 GGAGNIKTLGDAYEFAVDVRDFSPEDIIVTTSNNHIEVRA---EKLAADGTVMNTFAHKC : .... : . .::. ::::.. : . .. :::.. :. : . : .: XP_011 -GLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKY 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 QLPEDVDPTSVTSALREDGSLTIRARRHPHTEHVQQTFRTEIKI ..: :::: ..::.: :: ::. . : XP_011 RIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTIPITREEKPAVTAAPKK 130 140 150 160 170 >>NP_001276737 (OMIM: 123590,608810,613763,613869,615184 (175 aa) initn: 155 init1: 81 opt: 178 Z-score: 196.9 bits: 42.9 E(85289): 0.00032 Smith-Waterman score: 178; 32.5% identity (55.6% similar) in 117 aa overlap (40-153:39-149) 10 20 30 40 50 60 pF1KE6 RAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDDFGSFMRPHSEPLAFPARP : .:: : ::.: : : . NP_001 WIRRPFFPFHSPSRLFDQFFGEHLLESDLFPTSTSLSPFYLRPPSFLR---APSWFDT-- 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 GGAGNIKTLGDAYEFAVDVRDFSPEDIIVTTSNNHIEVRA---EKLAADGTVMNTFAHKC : .... : . .::. ::::.. : . .. :::.. :. : . : .: NP_001 -GLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKY 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 QLPEDVDPTSVTSALREDGSLTIRARRHPHTEHVQQTFRTEIKI ..: :::: ..::.: :: ::. . : NP_001 RIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTIPITREEKPAVTAAPKK 130 140 150 160 170 >>NP_001876 (OMIM: 123590,608810,613763,613869,615184) a (175 aa) initn: 155 init1: 81 opt: 178 Z-score: 196.9 bits: 42.9 E(85289): 0.00032 Smith-Waterman score: 178; 32.5% identity (55.6% similar) in 117 aa overlap (40-153:39-149) 10 20 30 40 50 60 pF1KE6 RAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDDFGSFMRPHSEPLAFPARP : .:: : ::.: : : . NP_001 WIRRPFFPFHSPSRLFDQFFGEHLLESDLFPTSTSLSPFYLRPPSFLR---APSWFDT-- 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 GGAGNIKTLGDAYEFAVDVRDFSPEDIIVTTSNNHIEVRA---EKLAADGTVMNTFAHKC : .... : . .::. ::::.. : . .. :::.. :. : . : .: NP_001 -GLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKY 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 QLPEDVDPTSVTSALREDGSLTIRARRHPHTEHVQQTFRTEIKI ..: :::: ..::.: :: ::. . : NP_001 RIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTIPITREEKPAVTAAPKK 130 140 150 160 170 >>NP_653218 (OMIM: 610695) heat shock protein beta-6 [Ho (160 aa) initn: 169 init1: 86 opt: 175 Z-score: 194.4 bits: 42.3 E(85289): 0.00043 Smith-Waterman score: 175; 36.0% identity (59.0% similar) in 100 aa overlap (55-151:54-146) 30 40 50 60 70 80 pF1KE6 STSSSASRALPAQDPPMEKALSMFSDDFGSFMRPHSEPLAFPARPGGAGNIKTLGDAYEF ..: : : : :....: NP_653 APGRLFDQRFGEGLLEAELAALCPTTLAPYYLRAPSVALPVAQVPTDPGHFSVL------ 30 40 50 60 70 90 100 110 120 130 140 pF1KE6 AVDVRDFSPEDIIVTTSNNHIEVRA---EKLAADGTVMNTFAHKCQLPEDVDPTSVTSAL .::. ::::.: : . ..:.::.: :. : : : .. .:: :::..::::: NP_653 -LDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAREFHRRYRLPPGVDPAAVTSAL 80 90 100 110 120 130 150 160 170 pF1KE6 REDGSLTIRARRHPHTEHVQQTFRTEIKI .: :.:.: NP_653 SPEGVLSIQAAPASAQAPPPAAAK 140 150 160 170 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 09:48:30 2016 done: Tue Nov 8 09:48:31 2016 Total Scan time: 6.210 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]