FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6140, 170 aa
  1>>>pF1KE6140 170 - 170 aa - 170 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4545+/-0.00061; mu= 7.9790+/- 0.037
 mean_var=89.1121+/-17.338, 0's: 0 Z-trim(113.7): 13  B-trim: 9 in 1/51
 Lambda= 0.135864
 statistics sampled from 14312 (14324) to 14312 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.44), width:  16
 Scan time:  2.130

The best scores are:                                      opt bits E(32554)
CCDS30611.1 HSPB7 gene_id:27129|Hs108|chr1         ( 170) 1108 226.0   9e-60


>>CCDS30611.1 HSPB7 gene_id:27129|Hs108|chr1              (170 aa)
 initn: 1108 init1: 1108 opt: 1108  Z-score: 1186.6  bits: 226.0 E(32554): 9e-60
Smith-Waterman score: 1108; 100.0% identity (100.0% similar) in 170 aa overlap (1-170:1-170)

               10        20        30        40        50        60
pF1KE6 MSHRTSSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDDFGSFMRPHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MSHRTSSTFRAERSFHSSSSSSSSSTSSSASRALPAQDPPMEKALSMFSDDFGSFMRPHS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 EPLAFPARPGGAGNIKTLGDAYEFAVDVRDFSPEDIIVTTSNNHIEVRAEKLAADGTVMN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 EPLAFPARPGGAGNIKTLGDAYEFAVDVRDFSPEDIIVTTSNNHIEVRAEKLAADGTVMN
               70        80        90       100       110       120

              130       140       150       160       170
pF1KE6 TFAHKCQLPEDVDPTSVTSALREDGSLTIRARRHPHTEHVQQTFRTEIKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 TFAHKCQLPEDVDPTSVTSALREDGSLTIRARRHPHTEHVQQTFRTEIKI
              130       140       150       160       170




170 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:48:29 2016 done: Tue Nov  8 09:48:30 2016
 Total Scan time:  2.130 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]