FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5403, 340 aa 1>>>pF1KE5403 340 - 340 aa - 340 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.0365+/-0.000892; mu= 7.7524+/- 0.053 mean_var=102.4653+/-21.922, 0's: 0 Z-trim(108.7): 45 B-trim: 0 in 0/51 Lambda= 0.126703 statistics sampled from 10314 (10358) to 10314 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.318), width: 16 Scan time: 1.800 The best scores are: opt bits E(32554) CCDS1234.1 DUSP12 gene_id:11266|Hs108|chr1 ( 340) 2306 431.9 3.6e-121 CCDS33418.1 DUSP28 gene_id:285193|Hs108|chr2 ( 176) 306 66.2 2.3e-11 >>CCDS1234.1 DUSP12 gene_id:11266|Hs108|chr1 (340 aa) initn: 2306 init1: 2306 opt: 2306 Z-score: 2288.8 bits: 431.9 E(32554): 3.6e-121 Smith-Waterman score: 2306; 100.0% identity (100.0% similar) in 340 aa overlap (1-340:1-340) 10 20 30 40 50 60 pF1KE5 MLEAPGPSDGCELSNPSASRVSCAGQMLEVQPGLYFGGAAAVAEPDHLREAGITAVLTVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MLEAPGPSDGCELSNPSASRVSCAGQMLEVQPGLYFGGAAAVAEPDHLREAGITAVLTVD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 SEEPSFKAGPGVEDLWRLFVPALDKPETDLLSHLDRCVAFIGQARAEGRAVLVHCHAGVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 SEEPSFKAGPGVEDLWRLFVPALDKPETDLLSHLDRCVAFIGQARAEGRAVLVHCHAGVS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 RSVAIITAFLMKTDQLPFEKAYEKLQILKPEAKMNEGFEWQLKLYQAMGYEVDTSSAIYK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 RSVAIITAFLMKTDQLPFEKAYEKLQILKPEAKMNEGFEWQLKLYQAMGYEVDTSSAIYK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 QYRLQKVTEKYPELQNLPQELFAVDPTTVSQGLKDEVLYKCRKCRRSLFRSSSILDHREG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 QYRLQKVTEKYPELQNLPQELFAVDPTTVSQGLKDEVLYKCRKCRRSLFRSSSILDHREG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 SGPIAFAHKRMTPSSMLTTGRQAQCTSYFIEPVQWMESALLGVMDGQLLCPKCSAKLGSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 SGPIAFAHKRMTPSSMLTTGRQAQCTSYFIEPVQWMESALLGVMDGQLLCPKCSAKLGSF 250 260 270 280 290 300 310 320 330 340 pF1KE5 NWYGEQCSCGRWITPAFQIHKNRVDEMKILPVLGSQTGKI :::::::::::::::::::::::::::::::::::::::: CCDS12 NWYGEQCSCGRWITPAFQIHKNRVDEMKILPVLGSQTGKI 310 320 330 340 >>CCDS33418.1 DUSP28 gene_id:285193|Hs108|chr2 (176 aa) initn: 225 init1: 225 opt: 306 Z-score: 317.6 bits: 66.2 E(32554): 2.3e-11 Smith-Waterman score: 306; 39.0% identity (70.2% similar) in 141 aa overlap (27-166:19-154) 10 20 30 40 50 60 pF1KE5 MLEAPGPSDGCELSNPSASRVSCAGQMLEVQPGLYFGGAAAVAEPDHLREAGITAVLTVD ...: :.:..:.: :.. ..: .::.: ..:. CCDS33 MGPAEAGRRGAASPVPPPLVRVAPSLFLGSARAAGAEEQLARAGVTLCVNVS 10 20 30 40 50 70 80 90 100 110 pF1KE5 SEEPSFKAGPGVEDLWRLFVPALDKPETDLLSHLD-RCVAFIGQARAEGRAVLVHCHAGV ..:. .: ::: .: ::..: : :::.::. :.:. . .:: : : ::.:. : CCDS33 RQQPGPRA-PGVAEL---RVPVFDDPAEDLLAHLEPTCAAMEAAVRAGG-ACLVYCKNGR 60 70 80 90 100 120 130 140 150 160 170 pF1KE5 SRSVAIITAFLMKTDQLPFEKAYEKLQILKPEAKMNEGFEWQLKLYQAMGYEVDTSSAIY :::.:. ::.::. : . ::.. .. .: :. : :: ::. :. CCDS33 SRSAAVCTAYLMRHRGLSLAKAFQMVKSARPVAEPNPGFWSQLQKYEEALQAQSCLQGEP 110 120 130 140 150 160 180 190 200 210 220 230 pF1KE5 KQYRLQKVTEKYPELQNLPQELFAVDPTTVSQGLKDEVLYKCRKCRRSLFRSSSILDHRE CCDS33 PALGLGPEA 170 340 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 00:23:42 2016 done: Tue Nov 8 00:23:42 2016 Total Scan time: 1.800 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]