FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1442, 255 aa 1>>>pF1KE1442 255 - 255 aa - 255 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.9318+/-0.000729; mu= 9.2319+/- 0.044 mean_var=149.4281+/-29.129, 0's: 0 Z-trim(115.8): 47 B-trim: 38 in 1/50 Lambda= 0.104920 statistics sampled from 16281 (16328) to 16281 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.823), E-opt: 0.2 (0.502), width: 16 Scan time: 2.030 The best scores are: opt bits E(32554) CCDS92.1 TNFRSF9 gene_id:3604|Hs108|chr1 ( 255) 1848 290.3 8.5e-79 >>CCDS92.1 TNFRSF9 gene_id:3604|Hs108|chr1 (255 aa) initn: 1848 init1: 1848 opt: 1848 Z-score: 1528.2 bits: 290.3 E(32554): 8.5e-79 Smith-Waterman score: 1848; 100.0% identity (100.0% similar) in 255 aa overlap (1-255:1-255) 10 20 30 40 50 60 pF1KE1 MGNSCYNIVATLLLVLNFERTRSLQDPCSNCPAGTFCDNNRNQICSPCPPNSFSSAGGQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS92 MGNSCYNIVATLLLVLNFERTRSLQDPCSNCPAGTFCDNNRNQICSPCPPNSFSSAGGQR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 TCDICRQCKGVFRTRKECSSTSNAECDCTPGFHCLGAGCSMCEQDCKQGQELTKKGCKDC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS92 TCDICRQCKGVFRTRKECSSTSNAECDCTPGFHCLGAGCSMCEQDCKQGQELTKKGCKDC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 CFGTFNDQKRGICRPWTNCSLDGKSVLVNGTKERDVVCGPSPADLSPGASSVTPPAPARE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS92 CFGTFNDQKRGICRPWTNCSLDGKSVLVNGTKERDVVCGPSPADLSPGASSVTPPAPARE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 PGHSPQIISFFLALTSTALLFLLFFLTLRFSVVKRGRKKLLYIFKQPFMRPVQTTQEEDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS92 PGHSPQIISFFLALTSTALLFLLFFLTLRFSVVKRGRKKLLYIFKQPFMRPVQTTQEEDG 190 200 210 220 230 240 250 pF1KE1 CSCRFPEEEEGGCEL ::::::::::::::: CCDS92 CSCRFPEEEEGGCEL 250 255 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:17:24 2016 done: Mon Nov 7 02:17:25 2016 Total Scan time: 2.030 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]