FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6241, 276 aa 1>>>pF1KE6241 276 - 276 aa - 276 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0489+/-0.000664; mu= 17.0898+/- 0.040 mean_var=68.7591+/-13.681, 0's: 0 Z-trim(111.2): 10 B-trim: 0 in 0/49 Lambda= 0.154671 statistics sampled from 12156 (12163) to 12156 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.742), E-opt: 0.2 (0.374), width: 16 Scan time: 2.120 The best scores are: opt bits E(32554) CCDS11583.1 COX11 gene_id:1353|Hs108|chr17 ( 276) 1942 441.7 2.7e-124 CCDS82162.1 COX11 gene_id:1353|Hs108|chr17 ( 230) 1516 346.6 9.8e-96 CCDS58579.1 COX11 gene_id:1353|Hs108|chr17 ( 231) 1516 346.6 9.9e-96 >>CCDS11583.1 COX11 gene_id:1353|Hs108|chr17 (276 aa) initn: 1942 init1: 1942 opt: 1942 Z-score: 2344.8 bits: 441.7 E(32554): 2.7e-124 Smith-Waterman score: 1942; 99.6% identity (100.0% similar) in 276 aa overlap (1-276:1-276) 10 20 30 40 50 60 pF1KE6 MGGLWRPGWRCVPFCGWRWIHPGSPTRAAERVEPFLRPEWSGTGGAERGLRWLGTWKRCS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MGGLWRPGWRCVPFCGWRWIHPGSPTRAAERVEPFLRPEWSGTGGAERGLRWLGTWKRCS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 LRARHPALQPPRRPKSSNPFTRAQEEERRRQNKTTLTYVAAVAVGMLGASYAAVPLYRLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 LRARHPALQPPRRPKSSNPFTRAQEEERRRQNKTTLTYVAAVAVGMLGASYAAVPLYRLY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 CQTTGLGGSAVAGHASDKIENMVPVKDRIIKISFNADVHASLQWNFRPQQTEIYVVPGET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 CQTTGLGGSAVAGHASDKIENMVPVKDRIIKISFNADVHASLQWNFRPQQTEIYVVPGET 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 ALAFYRVKNPTDKPVIGISTYNIVPFEAGQYFNKIQCFCFEEQRLNPQEEVDMPVFFYID ::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 ALAFYRAKNPTDKPVIGISTYNIVPFEAGQYFNKIQCFCFEEQRLNPQEEVDMPVFFYID 190 200 210 220 230 240 250 260 270 pF1KE6 PEFAEDPRMIKVDLITLSYTFFEAKEGHKLPVPGYN :::::::::::::::::::::::::::::::::::: CCDS11 PEFAEDPRMIKVDLITLSYTFFEAKEGHKLPVPGYN 250 260 270 >>CCDS82162.1 COX11 gene_id:1353|Hs108|chr17 (230 aa) initn: 1516 init1: 1516 opt: 1516 Z-score: 1832.2 bits: 346.6 E(32554): 9.8e-96 Smith-Waterman score: 1516; 99.5% identity (100.0% similar) in 216 aa overlap (1-216:1-216) 10 20 30 40 50 60 pF1KE6 MGGLWRPGWRCVPFCGWRWIHPGSPTRAAERVEPFLRPEWSGTGGAERGLRWLGTWKRCS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 MGGLWRPGWRCVPFCGWRWIHPGSPTRAAERVEPFLRPEWSGTGGAERGLRWLGTWKRCS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 LRARHPALQPPRRPKSSNPFTRAQEEERRRQNKTTLTYVAAVAVGMLGASYAAVPLYRLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 LRARHPALQPPRRPKSSNPFTRAQEEERRRQNKTTLTYVAAVAVGMLGASYAAVPLYRLY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 CQTTGLGGSAVAGHASDKIENMVPVKDRIIKISFNADVHASLQWNFRPQQTEIYVVPGET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 CQTTGLGGSAVAGHASDKIENMVPVKDRIIKISFNADVHASLQWNFRPQQTEIYVVPGET 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 ALAFYRVKNPTDKPVIGISTYNIVPFEAGQYFNKIQCFCFEEQRLNPQEEVDMPVFFYID ::::::.::::::::::::::::::::::::::::: CCDS82 ALAFYRAKNPTDKPVIGISTYNIVPFEAGQYFNKIQVHQSVNFTEYDKDT 190 200 210 220 230 250 260 270 pF1KE6 PEFAEDPRMIKVDLITLSYTFFEAKEGHKLPVPGYN >>CCDS58579.1 COX11 gene_id:1353|Hs108|chr17 (231 aa) initn: 1516 init1: 1516 opt: 1516 Z-score: 1832.2 bits: 346.6 E(32554): 9.9e-96 Smith-Waterman score: 1516; 99.5% identity (100.0% similar) in 216 aa overlap (1-216:1-216) 10 20 30 40 50 60 pF1KE6 MGGLWRPGWRCVPFCGWRWIHPGSPTRAAERVEPFLRPEWSGTGGAERGLRWLGTWKRCS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 MGGLWRPGWRCVPFCGWRWIHPGSPTRAAERVEPFLRPEWSGTGGAERGLRWLGTWKRCS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 LRARHPALQPPRRPKSSNPFTRAQEEERRRQNKTTLTYVAAVAVGMLGASYAAVPLYRLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 LRARHPALQPPRRPKSSNPFTRAQEEERRRQNKTTLTYVAAVAVGMLGASYAAVPLYRLY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 CQTTGLGGSAVAGHASDKIENMVPVKDRIIKISFNADVHASLQWNFRPQQTEIYVVPGET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 CQTTGLGGSAVAGHASDKIENMVPVKDRIIKISFNADVHASLQWNFRPQQTEIYVVPGET 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 ALAFYRVKNPTDKPVIGISTYNIVPFEAGQYFNKIQCFCFEEQRLNPQEEVDMPVFFYID ::::::.::::::::::::::::::::::::::::: CCDS58 ALAFYRAKNPTDKPVIGISTYNIVPFEAGQYFNKIQASKLHRVYVLESWHL 190 200 210 220 230 250 260 270 pF1KE6 PEFAEDPRMIKVDLITLSYTFFEAKEGHKLPVPGYN 276 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:22:59 2016 done: Tue Nov 8 11:22:59 2016 Total Scan time: 2.120 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]