Result of FASTA (ccds) for
pFN21AE6705
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6705, 767 aa
1>>>pF1KE6705 767 - 767 aa - 767 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7534+/-0.00094; mu= 17.9933+/- 0.056
mean_var=73.8382+/-14.652, 0's: 0 Z-trim(105.8): 15 B-trim: 0 in 0/50
Lambda= 0.149257
statistics sampled from 8632 (8641) to 8632 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.265), width: 16
Scan time: 2.950
The best scores are: opt bits E(32554)
CCDS13137.1 SEC23B gene_id:10483|Hs108|chr20 ( 767) 5205 1130.6 0
CCDS9668.1 SEC23A gene_id:10484|Hs108|chr14 ( 765) 4523 983.8 0
>>CCDS13137.1 SEC23B gene_id:10483|Hs108|chr20 (767 aa)
initn: 5205 init1: 5205 opt: 5205 Z-score: 6052.2 bits: 1130.6 E(32554): 0
Smith-Waterman score: 5205; 99.7% identity (99.9% similar) in 767 aa overlap (1-767:1-767)
10 20 30 40 50 60
pF1KE6 MATYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPLACLLTPLKERPDLPPVQYEPVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MATYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPLACLLTPLKERPDLPPVQYEPVL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 CSRPTCKAVLNPLCQVDYRAKLWACNFCFQRNQFPPAYGGISEVNQPAELMPQFSTIEYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CSRPTCKAVLNPLCQVDYRAKLWACNFCFQRNQFPPAYGGISEVNQPAELMPQFSTIEYV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 IQRGAQSPLIFLYVVDTCLEEDDLQALKESLQMSLSLLPPDALVGLITFGRMVQVHELSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IQRGAQSPLIFLYVVDTCLEEDDLQALKESLQMSLSLLPPDALVGLITFGRMVQVHELSC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 EGISKSYVFRGTKDLTAKQIQDMLGLTKPAMPMQQARPAQPQEHPFASSRFLQPVHKIDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EGISKSYVFRGTKDLTAKQIQDMLGLTKPAMPMQQARPAQPQEHPFASSRFLQPVHKIDM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 NLTDLLGELQRDPWPVTQGKRPLRSTGVALSIAVGLLEGTFPNTGARIMLFTGGPPTQGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NLTDLLGELQRDPWPVTQGKRPLRSTGVALSIAVGLLEGTFPNTGARIMLFTGGPPTQGP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 GMVVGDELKIPIRSWHDIEKDNARFMKKATKHYEMLANRTAANGHCIDIYACALDQTGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GMVVGDELKIPIRSWHDIEKDNARFMKKATKHYEMLANRTAANGHCIDIYACALDQTGLL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 EMKCCANLTGGYVVMGDSFNTSLFKQTFQRIFTKDFNGDFRMAFGATLDVKTSRELKIAG
::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EMKCCANLTGGYMVMGDSFNTSLFKQTFQRIFTKDFNGDFRMAFGATLDVKTSRELKIAG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE6 AIGPCVSLNVKGLCVSENELGVGGTSQWKICGLDPTSTLGIYFEVVNQHNTPIPQGGRGA
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AIGPCVSLNVKGPCVSENELGVGGTSQWKICGLDPTSTLGIYFEVVNQHNTPIPQGGRGA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE6 IQFVTHYQHSSTQRRIRVTTIARNWADVQSQLRHIEAAFDQEAAAVLMARLGVFRAESEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IQFVTHYQHSSTQRRIRVTTIARNWADVQSQLRHIEAAFDQEAAAVLMARLGVFRAESEE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE6 GPDVLRWLDRQLIRLCQKFGQYNKEDPTSFRLSDSFSLYPQFMFHLRRSPFLQVFNNSPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GPDVLRWLDRQLIRLCQKFGQYNKEDPTSFRLSDSFSLYPQFMFHLRRSPFLQVFNNSPD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE6 ESSYYRHHFARQDLTQSLIMIQPILYSYSFHGPPEPVLLDSSSILADRILLMDTFFQIVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ESSYYRHHFARQDLTQSLIMIQPILYSYSFHGPPEPVLLDSSSILADRILLMDTFFQIVI
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE6 YLGETIAQWRKAGYQDMPEYENFKHLLQAPLDDAQEILQARFPMPRYINTEHGGSQARFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YLGETIAQWRKAGYQDMPEYENFKHLLQAPLDDAQEILQARFPMPRYINTEHGGSQARFL
670 680 690 700 710 720
730 740 750 760
pF1KE6 LSKVNPSQTHNNLYAWGQETGAPILTDDVSLQVFMDHLKKLAVSSAC
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LSKVNPSQTHNNLYAWGQETGAPILTDDVSLQVFMDHLKKLAVSSAC
730 740 750 760
>>CCDS9668.1 SEC23A gene_id:10484|Hs108|chr14 (765 aa)
initn: 3252 init1: 3252 opt: 4523 Z-score: 5258.6 bits: 983.8 E(32554): 0
Smith-Waterman score: 4523; 84.7% identity (95.7% similar) in 767 aa overlap (1-766:1-764)
10 20 30 40 50 60
pF1KE6 MATYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPLACLLTPLKERPDLPPVQYEPVL
:.:::::::::::::::::::::::::::::::::::.: :.:::::::::::.::::::
CCDS96 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 CSRPTCKAVLNPLCQVDYRAKLWACNFCFQRNQFPPAYGGISEVNQPAELMPQFSTIEYV
::: ::.:::::::::::::::::::::.:::::::.:.::::.::::::.::::.::::
CCDS96 CSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 IQRGAQSPLIFLYVVDTCLEEDDLQALKESLQMSLSLLPPDALVGLITFGRMVQVHELSC
. :: : :::::::::::.:..::::::::.::::::::: :::::::::::::::::.:
CCDS96 VLRGPQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGC
130 140 150 160 170 180
190 200 210 220 230
pF1KE6 EGISKSYVFRGTKDLTAKQIQDMLGLTKPAMPMQQA-RPAQPQEHPFASSRFLQPVHKID
:::::::::::::::.:::.:.::::.: .:. :: : : :. : :.::::::.:::
CCDS96 EGISKSYVFRGTKDLSAKQLQEMLGLSK--VPLTQATRGPQVQQPP-PSNRFLQPVQKID
190 200 210 220 230
240 250 260 270 280 290
pF1KE6 MNLTDLLGELQRDPWPVTQGKRPLRSTGVALSIAVGLLEGTFPNTGARIMLFTGGPPTQG
::::::::::::::::: ::::::::.:::::::::::: ::::::::::.: ::: :::
CCDS96 MNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQG
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE6 PGMVVGDELKIPIRSWHDIEKDNARFMKKATKHYEMLANRTAANGHCIDIYACALDQTGL
:::::::::: ::::::::.::::...::.:::.: ::::.:..:: :::::::::::::
CCDS96 PGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGL
300 310 320 330 340 350
360 370 380 390 400 410
pF1KE6 LEMKCCANLTGGYVVMGDSFNTSLFKQTFQRIFTKDFNGDFRMAFGATLDVKTSRELKIA
:::::: ::::::.:::::::::::::::::.::::..:.:.:.::.::..:::::.::.
CCDS96 LEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKIS
360 370 380 390 400 410
420 430 440 450 460 470
pF1KE6 GAIGPCVSLNVKGLCVSENELGVGGTSQWKICGLDPTSTLGIYFEVVNQHNTPIPQGGRG
:::::::::: :: ::::::.:.::: :::::::.::.::.::::::::::.::::::::
CCDS96 GAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQGGRG
420 430 440 450 460 470
480 490 500 510 520 530
pF1KE6 AIQFVTHYQHSSTQRRIRVTTIARNWADVQSQLRHIEAAFDQEAAAVLMARLGVFRAESE
::::::.::::: :::::::::::::::.:.:...: :.:::::::.:::::...:::.:
CCDS96 AIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETE
480 490 500 510 520 530
540 550 560 570 580 590
pF1KE6 EGPDVLRWLDRQLIRLCQKFGQYNKEDPTSFRLSDSFSLYPQFMFHLRRSPFLQVFNNSP
:::::::::::::::::::::.:.:.::.:::.:..:::::::::::::: :::::::::
CCDS96 EGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQVFNNSP
540 550 560 570 580 590
600 610 620 630 640 650
pF1KE6 DESSYYRHHFARQDLTQSLIMIQPILYSYSFHGPPEPVLLDSSSILADRILLMDTFFQIV
:::::::::: ::::::::::::::::.::: :::::::::::::::::::::::::::.
CCDS96 DESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADRILLMDTFFQIL
600 610 620 630 640 650
660 670 680 690 700 710
pF1KE6 IYLGETIAQWRKAGYQDMPEYENFKHLLQAPLDDAQEILQARFPMPRYINTEHGGSQARF
:: :::::::::.:::::::::::.::::::.:::::::..::::::::.::::::::::
CCDS96 IYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPRYIDTEHGGSQARF
660 670 680 690 700 710
720 730 740 750 760
pF1KE6 LLSKVNPSQTHNNLYAWGQETGAPILTDDVSLQVFMDHLKKLAVSSAC
:::::::::::::.::::::.::::::::::::::::::::::::::
CCDS96 LLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVSSAA
720 730 740 750 760
767 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 15:32:26 2016 done: Tue Nov 8 15:32:26 2016
Total Scan time: 2.950 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]