FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6136, 103 aa 1>>>pF1KE6136 103 - 103 aa - 103 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1755+/-0.000319; mu= 10.0843+/- 0.020 mean_var=56.3482+/-11.042, 0's: 0 Z-trim(115.4): 5 B-trim: 0 in 0/56 Lambda= 0.170858 statistics sampled from 25876 (25879) to 25876 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.303), width: 16 Scan time: 4.050 The best scores are: opt bits E(85289) NP_000891 (OMIM: 154870,245150) matrix Gla protein ( 103) 682 175.6 1.2e-44 NP_001177768 (OMIM: 154870,245150) matrix Gla prot ( 128) 568 147.6 4.2e-36 >>NP_000891 (OMIM: 154870,245150) matrix Gla protein iso (103 aa) initn: 723 init1: 682 opt: 682 Z-score: 922.5 bits: 175.6 E(85289): 1.2e-44 Smith-Waterman score: 682; 99.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103) 10 20 30 40 50 60 pF1KE6 MKSLILLAILAALAVVTLCYESHESMESYELNPFINRRNANTFISPQQRWRAKVQERIRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MKSLILLAILAALAVVTLCYESHESMESYELNPFINRRNANTFISPQQRWRAKVQERIRE 10 20 30 40 50 60 70 80 90 100 pF1KE6 RSKPVHELNREACDDYRLCERYAMVYGYNAAYNRYFRKRRGAK :::::::::::::::::::::::::::::::::::::::::.: NP_000 RSKPVHELNREACDDYRLCERYAMVYGYNAAYNRYFRKRRGTK 70 80 90 100 >>NP_001177768 (OMIM: 154870,245150) matrix Gla protein (128 aa) initn: 693 init1: 568 opt: 568 Z-score: 769.1 bits: 147.6 E(85289): 4.2e-36 Smith-Waterman score: 622; 79.7% identity (80.5% similar) in 128 aa overlap (1-103:1-128) 10 20 30 pF1KE6 MKSLILLAILAALAVVTLCY-------------------------ESHESMESYELNPFI :::::::::::::::::::: ::::::::::::::: NP_001 MKSLILLAILAALAVVTLCYGEWQKEENFGFDIVSVLSLNWHRAQESHESMESYELNPFI 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE6 NRRNANTFISPQQRWRAKVQERIRERSKPVHELNREACDDYRLCERYAMVYGYNAAYNRY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NRRNANTFISPQQRWRAKVQERIRERSKPVHELNREACDDYRLCERYAMVYGYNAAYNRY 70 80 90 100 110 120 100 pF1KE6 FRKRRGAK ::::::.: NP_001 FRKRRGTK 103 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 09:46:39 2016 done: Tue Nov 8 09:46:40 2016 Total Scan time: 4.050 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]