FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6136, 103 aa 1>>>pF1KE6136 103 - 103 aa - 103 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2523+/-0.000669; mu= 9.4819+/- 0.040 mean_var=55.2464+/-10.916, 0's: 0 Z-trim(108.9): 13 B-trim: 2 in 1/51 Lambda= 0.172553 statistics sampled from 10481 (10488) to 10481 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.322), width: 16 Scan time: 1.070 The best scores are: opt bits E(32554) CCDS8669.1 MGP gene_id:4256|Hs108|chr12 ( 103) 682 177.2 1.6e-45 CCDS53752.1 MGP gene_id:4256|Hs108|chr12 ( 128) 568 148.8 6.7e-37 >>CCDS8669.1 MGP gene_id:4256|Hs108|chr12 (103 aa) initn: 723 init1: 682 opt: 682 Z-score: 930.9 bits: 177.2 E(32554): 1.6e-45 Smith-Waterman score: 682; 99.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103) 10 20 30 40 50 60 pF1KE6 MKSLILLAILAALAVVTLCYESHESMESYELNPFINRRNANTFISPQQRWRAKVQERIRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS86 MKSLILLAILAALAVVTLCYESHESMESYELNPFINRRNANTFISPQQRWRAKVQERIRE 10 20 30 40 50 60 70 80 90 100 pF1KE6 RSKPVHELNREACDDYRLCERYAMVYGYNAAYNRYFRKRRGAK :::::::::::::::::::::::::::::::::::::::::.: CCDS86 RSKPVHELNREACDDYRLCERYAMVYGYNAAYNRYFRKRRGTK 70 80 90 100 >>CCDS53752.1 MGP gene_id:4256|Hs108|chr12 (128 aa) initn: 693 init1: 568 opt: 568 Z-score: 776.0 bits: 148.8 E(32554): 6.7e-37 Smith-Waterman score: 622; 79.7% identity (80.5% similar) in 128 aa overlap (1-103:1-128) 10 20 30 pF1KE6 MKSLILLAILAALAVVTLCY-------------------------ESHESMESYELNPFI :::::::::::::::::::: ::::::::::::::: CCDS53 MKSLILLAILAALAVVTLCYGEWQKEENFGFDIVSVLSLNWHRAQESHESMESYELNPFI 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE6 NRRNANTFISPQQRWRAKVQERIRERSKPVHELNREACDDYRLCERYAMVYGYNAAYNRY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 NRRNANTFISPQQRWRAKVQERIRERSKPVHELNREACDDYRLCERYAMVYGYNAAYNRY 70 80 90 100 110 120 100 pF1KE6 FRKRRGAK ::::::.: CCDS53 FRKRRGTK 103 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 09:46:39 2016 done: Tue Nov 8 09:46:39 2016 Total Scan time: 1.070 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]