FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9982, 709 aa 1>>>pF1KB9982 709 - 709 aa - 709 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.9518+/-0.000531; mu= -2.1638+/- 0.033 mean_var=293.7686+/-61.402, 0's: 0 Z-trim(117.0): 57 B-trim: 1919 in 2/52 Lambda= 0.074829 statistics sampled from 28510 (28576) to 28510 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.335), width: 16 Scan time: 12.380 The best scores are: opt bits E(85289) NP_003137 (OMIM: 604328) FACT complex subunit SSRP ( 709) 4672 518.9 2.7e-146 XP_016873669 (OMIM: 604328) PREDICTED: FACT comple ( 843) 4672 519.0 3e-146 XP_016873670 (OMIM: 604328) PREDICTED: FACT comple ( 609) 2882 325.6 3.5e-88 NP_001124161 (OMIM: 163906) high mobility group pr ( 209) 294 45.8 0.0002 NP_002120 (OMIM: 163906) high mobility group prote ( 209) 294 45.8 0.0002 NP_001124160 (OMIM: 163906) high mobility group pr ( 209) 294 45.8 0.0002 NP_001300821 (OMIM: 163905) high mobility group pr ( 215) 294 45.8 0.00021 NP_002119 (OMIM: 163905) high mobility group prote ( 215) 294 45.8 0.00021 NP_001300822 (OMIM: 163905) high mobility group pr ( 215) 294 45.8 0.00021 NP_005333 (OMIM: 300193,300915) high mobility grou ( 200) 274 43.6 0.00088 NP_001288158 (OMIM: 300193,300915) high mobility g ( 200) 274 43.6 0.00088 NP_001288157 (OMIM: 300193,300915) high mobility g ( 200) 274 43.6 0.00088 NP_001288160 (OMIM: 300193,300915) high mobility g ( 220) 274 43.7 0.00094 XP_011519460 (OMIM: 605534) PREDICTED: high mobili ( 347) 251 41.4 0.0074 NP_060670 (OMIM: 605534) high mobility group prote ( 347) 251 41.4 0.0074 NP_001291433 (OMIM: 605534) high mobility group pr ( 347) 251 41.4 0.0074 XP_011521304 (OMIM: 611416) PREDICTED: TOX high mo ( 553) 253 41.8 0.009 NP_001139660 (OMIM: 611416) TOX high mobility grou ( 571) 253 41.8 0.0092 XP_016878631 (OMIM: 611416) PREDICTED: TOX high mo ( 572) 253 41.8 0.0093 XP_005255949 (OMIM: 611416) PREDICTED: TOX high mo ( 575) 253 41.8 0.0093 NP_001073899 (OMIM: 611416) TOX high mobility grou ( 576) 253 41.8 0.0093 NP_003104 (OMIM: 604585) nuclear autoantigen Sp-10 ( 879) 257 42.4 0.0094 >>NP_003137 (OMIM: 604328) FACT complex subunit SSRP1 [H (709 aa) initn: 4672 init1: 4672 opt: 4672 Z-score: 2747.5 bits: 518.9 E(85289): 2.7e-146 Smith-Waterman score: 4672; 100.0% identity (100.0% similar) in 709 aa overlap (1-709:1-709) 10 20 30 40 50 60 pF1KB9 MAETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MAETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 FDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDGVDPVEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 FDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDGVDPVEA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 FAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 FAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTVL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 RLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 RLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFEG 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 RLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 RLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGFI 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 YVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 YVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVNA 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 KKLNIKNRGLKEGMNPSYDEYADSDEDQHDAYLERMKEEGKIREENANDSSDDSGEETDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 KKLNIKNRGLKEGMNPSYDEYADSDEDQHDAYLERMKEEGKIREENANDSSDDSGEETDE 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB9 SFNPGEEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 SFNPGEEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKK 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB9 GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKA 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB9 EDARRDYEKAMKEYEGGRGESSKRDKSKKKKKVKVKMEKKSTPSRGSSSKSSSRQLSESF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 EDARRDYEKAMKEYEGGRGESSKRDKSKKKKKVKVKMEKKSTPSRGSSSKSSSRQLSESF 610 620 630 640 650 660 670 680 690 700 pF1KB9 KSKEFVSSDESSSGENKSKKKRRRSEDSEEEELASTPPSSEDSASGSDE ::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 KSKEFVSSDESSSGENKSKKKRRRSEDSEEEELASTPPSSEDSASGSDE 670 680 690 700 >>XP_016873669 (OMIM: 604328) PREDICTED: FACT complex su (843 aa) initn: 4672 init1: 4672 opt: 4672 Z-score: 2746.5 bits: 519.0 E(85289): 3e-146 Smith-Waterman score: 4672; 100.0% identity (100.0% similar) in 709 aa overlap (1-709:135-843) 10 20 30 pF1KB9 MAETLEFNDVYQEVKGSMNDGRLRLSRQGI :::::::::::::::::::::::::::::: XP_016 HSGVGAQLPVYLVSLVQPGALPRPPQAGVDMAETLEFNDVYQEVKGSMNDGRLRLSRQGI 110 120 130 140 150 160 40 50 60 70 80 90 pF1KB9 IFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 IFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFK 170 180 190 200 210 220 100 110 120 130 140 150 pF1KB9 THYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 THYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEF 230 240 250 260 270 280 160 170 180 190 200 210 pF1KB9 HQNDDAEVSLMEVRFYVPPTQEDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 HQNDDAEVSLMEVRFYVPPTQEDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTP 290 300 310 320 330 340 220 230 240 250 260 270 pF1KB9 RGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRY 350 360 370 380 390 400 280 290 300 310 320 330 pF1KB9 HFLILLFSKDEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 HFLILLFSKDEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPG 410 420 430 440 450 460 340 350 360 370 380 390 pF1KB9 NFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFARGTTTTRSFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 NFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFARGTTTTRSFD 470 480 490 500 510 520 400 410 420 430 440 450 pF1KB9 FEIETKQGTQYTFSSIEREEYGKLFDFVNAKKLNIKNRGLKEGMNPSYDEYADSDEDQHD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 FEIETKQGTQYTFSSIEREEYGKLFDFVNAKKLNIKNRGLKEGMNPSYDEYADSDEDQHD 530 540 550 560 570 580 460 470 480 490 500 510 pF1KB9 AYLERMKEEGKIREENANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEGDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 AYLERMKEEGKIREENANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEGDS 590 600 610 620 630 640 520 530 540 550 560 570 pF1KB9 DRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP 650 660 670 680 690 700 580 590 600 610 620 630 pF1KB9 GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEGGRGESSKRDKSKKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEGGRGESSKRDKSKKK 710 720 730 740 750 760 640 650 660 670 680 690 pF1KB9 KKVKVKMEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESSSGENKSKKKRRRSEDSEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KKVKVKMEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESSSGENKSKKKRRRSEDSEE 770 780 790 800 810 820 700 pF1KB9 EELASTPPSSEDSASGSDE ::::::::::::::::::: XP_016 EELASTPPSSEDSASGSDE 830 840 >>XP_016873670 (OMIM: 604328) PREDICTED: FACT complex su (609 aa) initn: 2882 init1: 2882 opt: 2882 Z-score: 1704.0 bits: 325.6 E(85289): 3.5e-88 Smith-Waterman score: 2882; 100.0% identity (100.0% similar) in 432 aa overlap (1-432:135-566) 10 20 30 pF1KB9 MAETLEFNDVYQEVKGSMNDGRLRLSRQGI :::::::::::::::::::::::::::::: XP_016 HSGVGAQLPVYLVSLVQPGALPRPPQAGVDMAETLEFNDVYQEVKGSMNDGRLRLSRQGI 110 120 130 140 150 160 40 50 60 70 80 90 pF1KB9 IFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 IFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFK 170 180 190 200 210 220 100 110 120 130 140 150 pF1KB9 THYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 THYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEF 230 240 250 260 270 280 160 170 180 190 200 210 pF1KB9 HQNDDAEVSLMEVRFYVPPTQEDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 HQNDDAEVSLMEVRFYVPPTQEDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTP 290 300 310 320 330 340 220 230 240 250 260 270 pF1KB9 RGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RGRYDIRIYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRY 350 360 370 380 390 400 280 290 300 310 320 330 pF1KB9 HFLILLFSKDEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 HFLILLFSKDEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPG 410 420 430 440 450 460 340 350 360 370 380 390 pF1KB9 NFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFARGTTTTRSFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 NFQGHSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFARGTTTTRSFD 470 480 490 500 510 520 400 410 420 430 440 450 pF1KB9 FEIETKQGTQYTFSSIEREEYGKLFDFVNAKKLNIKNRGLKEGMNPSYDEYADSDEDQHD :::::::::::::::::::::::::::::::::::::::::: XP_016 FEIETKQGTQYTFSSIEREEYGKLFDFVNAKKLNIKNRGLKEKKEVRVTLSPSWCRFPLH 530 540 550 560 570 580 460 470 480 490 500 510 pF1KB9 AYLERMKEEGKIREENANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEGDS XP_016 DLRPVYAAPQEPPVGLGEGGAWGLD 590 600 >>NP_001124161 (OMIM: 163906) high mobility group protei (209 aa) initn: 370 init1: 248 opt: 294 Z-score: 200.3 bits: 45.8 E(85289): 0.0002 Smith-Waterman score: 294; 35.6% identity (63.1% similar) in 160 aa overlap (479-632:33-184) 450 460 470 480 490 500 pF1KB9 HDAYLERMKEEGKIREENANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEG : : : .: . .:.. . .. .:. : NP_001 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 10 20 30 40 50 60 510 520 530 540 550 560 pF1KB9 DSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGK--DPNAPKRPMSAYMLWLNASREKIK . : ::.. .. :. : :::: :::::::: ::..:. . : ::: NP_001 MAKSD--------KARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIK 70 80 90 100 110 570 580 590 600 610 620 pF1KB9 SDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEG-GRGESSKRD :.:::.:: : .:: ::.:. .: . :. ...:: .. ::: . :.. :..:..:. NP_001 SEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKG 120 130 140 150 160 170 630 640 650 660 670 680 pF1KB9 KSK---KKKKVKVKMEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESSSGENKSKKKR .. .::: NP_001 PGRPTGSKKKNEPEDEEEEEEEEDEDEEEEDEDEE 180 190 200 >>NP_002120 (OMIM: 163906) high mobility group protein B (209 aa) initn: 370 init1: 248 opt: 294 Z-score: 200.3 bits: 45.8 E(85289): 0.0002 Smith-Waterman score: 294; 35.6% identity (63.1% similar) in 160 aa overlap (479-632:33-184) 450 460 470 480 490 500 pF1KB9 HDAYLERMKEEGKIREENANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEG : : : .: . .:.. . .. .:. : NP_002 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 10 20 30 40 50 60 510 520 530 540 550 560 pF1KB9 DSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGK--DPNAPKRPMSAYMLWLNASREKIK . : ::.. .. :. : :::: :::::::: ::..:. . : ::: NP_002 MAKSD--------KARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIK 70 80 90 100 110 570 580 590 600 610 620 pF1KB9 SDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEG-GRGESSKRD :.:::.:: : .:: ::.:. .: . :. ...:: .. ::: . :.. :..:..:. NP_002 SEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKG 120 130 140 150 160 170 630 640 650 660 670 680 pF1KB9 KSK---KKKKVKVKMEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESSSGENKSKKKR .. .::: NP_002 PGRPTGSKKKNEPEDEEEEEEEEDEDEEEEDEDEE 180 190 200 >>NP_001124160 (OMIM: 163906) high mobility group protei (209 aa) initn: 370 init1: 248 opt: 294 Z-score: 200.3 bits: 45.8 E(85289): 0.0002 Smith-Waterman score: 294; 35.6% identity (63.1% similar) in 160 aa overlap (479-632:33-184) 450 460 470 480 490 500 pF1KB9 HDAYLERMKEEGKIREENANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEG : : : .: . .:.. . .. .:. : NP_001 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 10 20 30 40 50 60 510 520 530 540 550 560 pF1KB9 DSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGK--DPNAPKRPMSAYMLWLNASREKIK . : ::.. .. :. : :::: :::::::: ::..:. . : ::: NP_001 MAKSD--------KARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIK 70 80 90 100 110 570 580 590 600 610 620 pF1KB9 SDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEG-GRGESSKRD :.:::.:: : .:: ::.:. .: . :. ...:: .. ::: . :.. :..:..:. NP_001 SEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKG 120 130 140 150 160 170 630 640 650 660 670 680 pF1KB9 KSK---KKKKVKVKMEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESSSGENKSKKKR .. .::: NP_001 PGRPTGSKKKNEPEDEEEEEEEEDEDEEEEDEDEE 180 190 200 >>NP_001300821 (OMIM: 163905) high mobility group protei (215 aa) initn: 383 init1: 253 opt: 294 Z-score: 200.1 bits: 45.8 E(85289): 0.00021 Smith-Waterman score: 294; 35.6% identity (65.0% similar) in 160 aa overlap (479-632:33-186) 450 460 470 480 490 500 pF1KB9 HDAYLERMKEEGKIREENANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEG : : : .: . .:.. . ::. ... NP_001 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKT-MSAKEKGKFE 10 20 30 40 50 60 510 520 530 540 550 560 pF1KB9 DSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSD : . .: : . .. : :.. : :: ::::::::: ::..:. . : :::.. NP_001 DMAKADKARYE-REMKTYIPPKGETK----KKFKDPNAPKRPPSAFFLFCSEYRPKIKGE 70 80 90 100 110 570 580 590 600 610 620 pF1KB9 HPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEG-GRGESSKR--- :::.:: :..:: ::.:.. . . :. ...:: .. ::: . :.. :. ...:. NP_001 HPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVV 120 130 140 150 160 170 630 640 650 660 670 680 pF1KB9 --DKSKKKKKVKVKMEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESSSGENKSKKKR .::::::. NP_001 KAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE 180 190 200 210 >>NP_002119 (OMIM: 163905) high mobility group protein B (215 aa) initn: 383 init1: 253 opt: 294 Z-score: 200.1 bits: 45.8 E(85289): 0.00021 Smith-Waterman score: 294; 35.6% identity (65.0% similar) in 160 aa overlap (479-632:33-186) 450 460 470 480 490 500 pF1KB9 HDAYLERMKEEGKIREENANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEG : : : .: . .:.. . ::. ... NP_002 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKT-MSAKEKGKFE 10 20 30 40 50 60 510 520 530 540 550 560 pF1KB9 DSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSD : . .: : . .. : :.. : :: ::::::::: ::..:. . : :::.. NP_002 DMAKADKARYE-REMKTYIPPKGETK----KKFKDPNAPKRPPSAFFLFCSEYRPKIKGE 70 80 90 100 110 570 580 590 600 610 620 pF1KB9 HPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEG-GRGESSKR--- :::.:: :..:: ::.:.. . . :. ...:: .. ::: . :.. :. ...:. NP_002 HPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVV 120 130 140 150 160 170 630 640 650 660 670 680 pF1KB9 --DKSKKKKKVKVKMEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESSSGENKSKKKR .::::::. NP_002 KAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE 180 190 200 210 >>NP_001300822 (OMIM: 163905) high mobility group protei (215 aa) initn: 383 init1: 253 opt: 294 Z-score: 200.1 bits: 45.8 E(85289): 0.00021 Smith-Waterman score: 294; 35.6% identity (65.0% similar) in 160 aa overlap (479-632:33-186) 450 460 470 480 490 500 pF1KB9 HDAYLERMKEEGKIREENANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEG : : : .: . .:.. . ::. ... NP_001 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKT-MSAKEKGKFE 10 20 30 40 50 60 510 520 530 540 550 560 pF1KB9 DSDRDEKKRKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSD : . .: : . .. : :.. : :: ::::::::: ::..:. . : :::.. NP_001 DMAKADKARYE-REMKTYIPPKGETK----KKFKDPNAPKRPPSAFFLFCSEYRPKIKGE 70 80 90 100 110 570 580 590 600 610 620 pF1KB9 HPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEG-GRGESSKR--- :::.:: :..:: ::.:.. . . :. ...:: .. ::: . :.. :. ...:. NP_001 HPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVV 120 130 140 150 160 170 630 640 650 660 670 680 pF1KB9 --DKSKKKKKVKVKMEKKSTPSRGSSSKSSSRQLSESFKSKEFVSSDESSSGENKSKKKR .::::::. NP_001 KAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE 180 190 200 210 >>NP_005333 (OMIM: 300193,300915) high mobility group pr (200 aa) initn: 442 init1: 241 opt: 274 Z-score: 188.9 bits: 43.6 E(85289): 0.00088 Smith-Waterman score: 274; 37.0% identity (68.9% similar) in 135 aa overlap (510-640:53-187) 480 490 500 510 520 530 pF1KB9 ESFNPGEEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKA-KMAKDRKSRKK-PVE : ....: .. :: :. ::. . :.. NP_005 CREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYGPAK 30 40 50 60 70 80 540 550 560 570 580 590 pF1KB9 V-KKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEW :: ::::::::: :...:. . : :::: .::::: :..:: ::.:.... .:. . NP_005 GGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPY 90 100 110 120 130 140 600 610 620 630 640 650 pF1KB9 DRKAEDARRDYEKAMKEYEG-GRGESSKRDKSKKKKKVKVKMEKKSTPSRGSSSKSSSRQ :: .. ::: . .:.. :. ...: . .:::. . :.. NP_005 ITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEDEEEEEEEEEEEEEEDE 150 160 170 180 190 200 660 670 680 690 700 pF1KB9 LSESFKSKEFVSSDESSSGENKSKKKRRRSEDSEEEELASTPPSSEDSASGSDE 709 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:23:41 2016 done: Mon Nov 7 02:23:43 2016 Total Scan time: 12.380 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]