FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3582, 558 aa 1>>>pF1KE3582 558 - 558 aa - 558 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5808+/-0.00104; mu= 16.7680+/- 0.063 mean_var=62.0899+/-12.680, 0's: 0 Z-trim(102.8): 26 B-trim: 2 in 1/49 Lambda= 0.162766 statistics sampled from 7087 (7097) to 7087 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.582), E-opt: 0.2 (0.218), width: 16 Scan time: 3.180 The best scores are: opt bits E(32554) CCDS12437.1 GPI gene_id:2821|Hs108|chr19 ( 558) 3752 890.1 0 CCDS54246.1 GPI gene_id:2821|Hs108|chr19 ( 569) 2680 638.4 7e-183 >>CCDS12437.1 GPI gene_id:2821|Hs108|chr19 (558 aa) initn: 3752 init1: 3752 opt: 3752 Z-score: 4757.4 bits: 890.1 E(32554): 0 Smith-Waterman score: 3752; 100.0% identity (100.0% similar) in 558 aa overlap (1-558:1-558) 10 20 30 40 50 60 pF1KE3 MAALTRDPQFQKLQQWYREHRSELNLRRLFDANKDRFNHFSLTLNTNHGHILVDYSKNLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MAALTRDPQFQKLQQWYREHRSELNLRRLFDANKDRFNHFSLTLNTNHGHILVDYSKNLV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 TEDVMRMLVDLAKSRGVEAARERMFNGEKINYTEGRAVLHVALRNRSNTPILVDGKDVMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 TEDVMRMLVDLAKSRGVEAARERMFNGEKINYTEGRAVLHVALRNRSNTPILVDGKDVMP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 EVNKVLDKMKSFCQRVRSGDWKGYTGKTITDVINIGIGGSDLGPLMVTEALKPYSSGGPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 EVNKVLDKMKSFCQRVRSGDWKGYTGKTITDVINIGIGGSDLGPLMVTEALKPYSSGGPR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 VWYVSNIDGTHIAKTLAQLNPESSLFIIASKTFTTQETITNAETAKEWFLQAAKDPSAVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 VWYVSNIDGTHIAKTLAQLNPESSLFIIASKTFTTQETITNAETAKEWFLQAAKDPSAVA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 KHFVALSTNTTKVKEFGIDPQNMFEFWDWVGGRYSLWSAIGLSIALHVGFDNFEQLLSGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 KHFVALSTNTTKVKEFGIDPQNMFEFWDWVGGRYSLWSAIGLSIALHVGFDNFEQLLSGA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 HWMDQHFRTTPLEKNAPVLLALLGIWYINCFGCETHAMLPYDQYLHRFAAYFQQGDMESN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 HWMDQHFRTTPLEKNAPVLLALLGIWYINCFGCETHAMLPYDQYLHRFAAYFQQGDMESN 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 GKYITKSGTRVDHQTGPIVWGEPGTNGQHAFYQLIHQGTKMIPCDFLIPVQTQHPIRKGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 GKYITKSGTRVDHQTGPIVWGEPGTNGQHAFYQLIHQGTKMIPCDFLIPVQTQHPIRKGL 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 HHKILLANFLAQTEALMRGKSTEEARKELQAAGKSPEDLERLLPHKVFEGNRPTNSIVFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 HHKILLANFLAQTEALMRGKSTEEARKELQAAGKSPEDLERLLPHKVFEGNRPTNSIVFT 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 KLTPFMLGALVAMYEHKIFVQGIIWDINSFDQWGVELGKQLAKKIEPELDGSAQVTSHDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 KLTPFMLGALVAMYEHKIFVQGIIWDINSFDQWGVELGKQLAKKIEPELDGSAQVTSHDA 490 500 510 520 530 540 550 pF1KE3 STNGLINFIKQQREARVQ :::::::::::::::::: CCDS12 STNGLINFIKQQREARVQ 550 >>CCDS54246.1 GPI gene_id:2821|Hs108|chr19 (569 aa) initn: 3550 init1: 2680 opt: 2680 Z-score: 3396.8 bits: 638.4 E(32554): 7e-183 Smith-Waterman score: 3498; 95.0% identity (95.0% similar) in 558 aa overlap (1-558:40-569) 10 20 30 pF1KE3 MAALTRDPQFQKLQQWYREHRSELNLRRLF :::::::::::::::::::::::::::::: CCDS54 LGSSDPRALPTLPTATSGQRPAKRRRKSPAMAALTRDPQFQKLQQWYREHRSELNLRRLF 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE3 DANKDRFNHFSLTLNTNHGHILVDYSKNLVTEDVMRMLVDLAKSRGVEAARERMFNGEKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 DANKDRFNHFSLTLNTNHGHILVDYSKNLVTEDVMRMLVDLAKSRGVEAARERMFNGEKI 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE3 NYTEGRAVLHVALRNRSNTPILVDGKDVMPEVNKVLDKMKSFCQRVRSGDWKGYTGKTIT :::::::::::::::::::::::::::::::::::::::::::: CCDS54 NYTEGRAVLHVALRNRSNTPILVDGKDVMPEVNKVLDKMKSFCQ---------------- 130 140 150 160 170 160 170 180 190 200 210 pF1KE3 DVINIGIGGSDLGPLMVTEALKPYSSGGPRVWYVSNIDGTHIAKTLAQLNPESSLFIIAS :::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 ------------GPLMVTEALKPYSSGGPRVWYVSNIDGTHIAKTLAQLNPESSLFIIAS 180 190 200 210 220 220 230 240 250 260 270 pF1KE3 KTFTTQETITNAETAKEWFLQAAKDPSAVAKHFVALSTNTTKVKEFGIDPQNMFEFWDWV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 KTFTTQETITNAETAKEWFLQAAKDPSAVAKHFVALSTNTTKVKEFGIDPQNMFEFWDWV 230 240 250 260 270 280 280 290 300 310 320 330 pF1KE3 GGRYSLWSAIGLSIALHVGFDNFEQLLSGAHWMDQHFRTTPLEKNAPVLLALLGIWYINC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 GGRYSLWSAIGLSIALHVGFDNFEQLLSGAHWMDQHFRTTPLEKNAPVLLALLGIWYINC 290 300 310 320 330 340 340 350 360 370 380 390 pF1KE3 FGCETHAMLPYDQYLHRFAAYFQQGDMESNGKYITKSGTRVDHQTGPIVWGEPGTNGQHA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 FGCETHAMLPYDQYLHRFAAYFQQGDMESNGKYITKSGTRVDHQTGPIVWGEPGTNGQHA 350 360 370 380 390 400 400 410 420 430 440 450 pF1KE3 FYQLIHQGTKMIPCDFLIPVQTQHPIRKGLHHKILLANFLAQTEALMRGKSTEEARKELQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 FYQLIHQGTKMIPCDFLIPVQTQHPIRKGLHHKILLANFLAQTEALMRGKSTEEARKELQ 410 420 430 440 450 460 460 470 480 490 500 510 pF1KE3 AAGKSPEDLERLLPHKVFEGNRPTNSIVFTKLTPFMLGALVAMYEHKIFVQGIIWDINSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 AAGKSPEDLERLLPHKVFEGNRPTNSIVFTKLTPFMLGALVAMYEHKIFVQGIIWDINSF 470 480 490 500 510 520 520 530 540 550 pF1KE3 DQWGVELGKQLAKKIEPELDGSAQVTSHDASTNGLINFIKQQREARVQ :::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 DQWGVELGKQLAKKIEPELDGSAQVTSHDASTNGLINFIKQQREARVQ 530 540 550 560 558 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:25:05 2016 done: Mon Nov 7 02:25:06 2016 Total Scan time: 3.180 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]