FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1519, 464 aa 1>>>pF1KE1519 464 - 464 aa - 464 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 13.9001+/-0.00135; mu= -14.8564+/- 0.082 mean_var=848.6325+/-178.243, 0's: 0 Z-trim(117.1): 157 B-trim: 550 in 2/54 Lambda= 0.044027 statistics sampled from 17703 (17852) to 17703 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.548), width: 16 Scan time: 2.980 The best scores are: opt bits E(32554) CCDS12084.1 SF3A2 gene_id:8175|Hs108|chr19 ( 464) 3479 235.9 6.7e-62 >>CCDS12084.1 SF3A2 gene_id:8175|Hs108|chr19 (464 aa) initn: 3479 init1: 3479 opt: 3479 Z-score: 1224.7 bits: 235.9 E(32554): 6.7e-62 Smith-Waterman score: 3479; 100.0% identity (100.0% similar) in 464 aa overlap (1-464:1-464) 10 20 30 40 50 60 pF1KE1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 KQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 KQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 FKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKMEKPPAPPSLPAGPPGVKRPPPPLMNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 FKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKMEKPPAPPSLPAGPPGVKRPPPPLMNG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 LPPRPPLPESLPPPPPGGLPLPPMPPTGPAPSGPPGPPQLPPPAPGVHPPAPVVHPPASG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 LPPRPPLPESLPPPPPGGLPLPPMPPTGPAPSGPPGPPQLPPPAPGVHPPAPVVHPPASG 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 VHPPAPGVHPPAPGVHPPAPGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 VHPPAPGVHPPAPGVHPPAPGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPP 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 APGVHPPPSAGVHPQAPGVHPAAPAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHPSAPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 APGVHPPPSAGVHPQAPGVHPAAPAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHPSAPG 370 380 390 400 410 420 430 440 450 460 pF1KE1 VHPQPPGVHPSNPGVHPPTPMPPMLRPPLPSEGPGNIPPPPPTN :::::::::::::::::::::::::::::::::::::::::::: CCDS12 VHPQPPGVHPSNPGVHPPTPMPPMLRPPLPSEGPGNIPPPPPTN 430 440 450 460 464 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:26:11 2016 done: Mon Nov 7 02:26:11 2016 Total Scan time: 2.980 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]