FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6321, 337 aa 1>>>pF1KE6321 337 - 337 aa - 337 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2434+/-0.000358; mu= 18.0015+/- 0.022 mean_var=82.4064+/-16.712, 0's: 0 Z-trim(115.3): 63 B-trim: 0 in 0/55 Lambda= 0.141284 statistics sampled from 25567 (25630) to 25567 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.673), E-opt: 0.2 (0.301), width: 16 Scan time: 5.130 The best scores are: opt bits E(85289) XP_011528376 (OMIM: 181500,607252) PREDICTED: apol ( 337) 2163 450.4 2.6e-126 XP_011528377 (OMIM: 181500,607252) PREDICTED: apol ( 337) 2163 450.4 2.6e-126 XP_011528380 (OMIM: 181500,607252) PREDICTED: apol ( 337) 2163 450.4 2.6e-126 XP_011528378 (OMIM: 181500,607252) PREDICTED: apol ( 337) 2163 450.4 2.6e-126 XP_011528379 (OMIM: 181500,607252) PREDICTED: apol ( 337) 2163 450.4 2.6e-126 NP_112092 (OMIM: 181500,607252) apolipoprotein L2 ( 337) 2163 450.4 2.6e-126 NP_663612 (OMIM: 181500,607252) apolipoprotein L2 ( 337) 2163 450.4 2.6e-126 XP_016884213 (OMIM: 181500,607252) PREDICTED: apol ( 449) 2163 450.5 3.2e-126 NP_001130013 (OMIM: 603743,612551) apolipoprotein ( 380) 1262 266.7 5.5e-71 XP_005261853 (OMIM: 603743,612551) PREDICTED: apol ( 380) 1262 266.7 5.5e-71 NP_001130012 (OMIM: 603743,612551) apolipoprotein ( 398) 1262 266.8 5.7e-71 NP_003652 (OMIM: 603743,612551) apolipoprotein L1 ( 398) 1262 266.8 5.7e-71 NP_663318 (OMIM: 603743,612551) apolipoprotein L1 ( 414) 1262 266.8 5.8e-71 XP_006724388 (OMIM: 607253) PREDICTED: apolipoprot ( 331) 1041 221.7 1.8e-57 NP_663614 (OMIM: 607253) apolipoprotein L3 isoform ( 331) 1041 221.7 1.8e-57 XP_006724387 (OMIM: 607253) PREDICTED: apolipoprot ( 331) 1041 221.7 1.8e-57 NP_055164 (OMIM: 607253) apolipoprotein L3 isoform ( 331) 1041 221.7 1.8e-57 NP_085147 (OMIM: 607253) apolipoprotein L3 isoform ( 331) 1041 221.7 1.8e-57 XP_016884438 (OMIM: 607253) PREDICTED: apolipoprot ( 332) 1033 220.0 5.6e-57 XP_016884440 (OMIM: 607253) PREDICTED: apolipoprot ( 332) 1033 220.0 5.6e-57 XP_016884436 (OMIM: 607253) PREDICTED: apolipoprot ( 332) 1033 220.0 5.6e-57 XP_016884437 (OMIM: 607253) PREDICTED: apolipoprot ( 332) 1033 220.0 5.6e-57 XP_016884439 (OMIM: 607253) PREDICTED: apolipoprot ( 332) 1033 220.0 5.6e-57 XP_016884435 (OMIM: 607253) PREDICTED: apolipoprot ( 332) 1033 220.0 5.6e-57 NP_663615 (OMIM: 607253) apolipoprotein L3 isoform ( 402) 1033 220.1 6.4e-57 XP_011528780 (OMIM: 603743,612551) PREDICTED: apol ( 277) 952 203.4 4.6e-52 NP_085146 (OMIM: 181500,607254) apolipoprotein L4 ( 348) 653 142.6 1.2e-33 NP_663693 (OMIM: 181500,607254) apolipoprotein L4 ( 351) 653 142.6 1.2e-33 NP_663617 (OMIM: 607253) apolipoprotein L3 isoform ( 202) 583 128.1 1.6e-29 NP_663616 (OMIM: 607253) apolipoprotein L3 isoform ( 202) 583 128.1 1.6e-29 XP_016884441 (OMIM: 607253) PREDICTED: apolipoprot ( 202) 583 128.1 1.6e-29 NP_085144 (OMIM: 607256) apolipoprotein L6 [Homo s ( 343) 502 111.8 2.2e-24 XP_011528694 (OMIM: 607256) PREDICTED: apolipoprot ( 343) 502 111.8 2.2e-24 XP_006724384 (OMIM: 607255) PREDICTED: apolipoprot ( 417) 493 110.0 9e-24 XP_016884434 (OMIM: 607255) PREDICTED: apolipoprot ( 361) 460 103.3 8.6e-22 NP_085145 (OMIM: 607255) apolipoprotein L5 [Homo s ( 433) 460 103.3 9.8e-22 NP_110444 (OMIM: 612456) apolipoprotein L domain-c ( 248) 150 39.9 0.0068 NP_001123887 (OMIM: 612456) apolipoprotein L domai ( 279) 150 40.0 0.0074 >>XP_011528376 (OMIM: 181500,607252) PREDICTED: apolipop (337 aa) initn: 2163 init1: 2163 opt: 2163 Z-score: 2388.7 bits: 450.4 E(85289): 2.6e-126 Smith-Waterman score: 2163; 100.0% identity (100.0% similar) in 337 aa overlap (1-337:1-337) 10 20 30 40 50 60 pF1KE6 MNPESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MNPESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 SHMVMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SHMVMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 NSVGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NSVGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 ARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 PPPHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PPPHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLE 250 260 270 280 290 300 310 320 330 pF1KE6 GAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ ::::::::::::::::::::::::::::::::::::: XP_011 GAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ 310 320 330 >>XP_011528377 (OMIM: 181500,607252) PREDICTED: apolipop (337 aa) initn: 2163 init1: 2163 opt: 2163 Z-score: 2388.7 bits: 450.4 E(85289): 2.6e-126 Smith-Waterman score: 2163; 100.0% identity (100.0% similar) in 337 aa overlap (1-337:1-337) 10 20 30 40 50 60 pF1KE6 MNPESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MNPESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 SHMVMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SHMVMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 NSVGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NSVGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 ARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 PPPHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PPPHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLE 250 260 270 280 290 300 310 320 330 pF1KE6 GAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ ::::::::::::::::::::::::::::::::::::: XP_011 GAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ 310 320 330 >>XP_011528380 (OMIM: 181500,607252) PREDICTED: apolipop (337 aa) initn: 2163 init1: 2163 opt: 2163 Z-score: 2388.7 bits: 450.4 E(85289): 2.6e-126 Smith-Waterman score: 2163; 100.0% identity (100.0% similar) in 337 aa overlap (1-337:1-337) 10 20 30 40 50 60 pF1KE6 MNPESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MNPESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 SHMVMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SHMVMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 NSVGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NSVGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 ARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 PPPHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PPPHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLE 250 260 270 280 290 300 310 320 330 pF1KE6 GAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ ::::::::::::::::::::::::::::::::::::: XP_011 GAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ 310 320 330 >>XP_011528378 (OMIM: 181500,607252) PREDICTED: apolipop (337 aa) initn: 2163 init1: 2163 opt: 2163 Z-score: 2388.7 bits: 450.4 E(85289): 2.6e-126 Smith-Waterman score: 2163; 100.0% identity (100.0% similar) in 337 aa overlap (1-337:1-337) 10 20 30 40 50 60 pF1KE6 MNPESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MNPESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 SHMVMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SHMVMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 NSVGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NSVGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 ARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 PPPHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PPPHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLE 250 260 270 280 290 300 310 320 330 pF1KE6 GAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ ::::::::::::::::::::::::::::::::::::: XP_011 GAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ 310 320 330 >>XP_011528379 (OMIM: 181500,607252) PREDICTED: apolipop (337 aa) initn: 2163 init1: 2163 opt: 2163 Z-score: 2388.7 bits: 450.4 E(85289): 2.6e-126 Smith-Waterman score: 2163; 100.0% identity (100.0% similar) in 337 aa overlap (1-337:1-337) 10 20 30 40 50 60 pF1KE6 MNPESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MNPESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 SHMVMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SHMVMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 NSVGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NSVGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 ARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 PPPHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PPPHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLE 250 260 270 280 290 300 310 320 330 pF1KE6 GAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ ::::::::::::::::::::::::::::::::::::: XP_011 GAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ 310 320 330 >>NP_112092 (OMIM: 181500,607252) apolipoprotein L2 [Hom (337 aa) initn: 2163 init1: 2163 opt: 2163 Z-score: 2388.7 bits: 450.4 E(85289): 2.6e-126 Smith-Waterman score: 2163; 100.0% identity (100.0% similar) in 337 aa overlap (1-337:1-337) 10 20 30 40 50 60 pF1KE6 MNPESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_112 MNPESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 SHMVMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_112 SHMVMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 NSVGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_112 NSVGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 ARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_112 ARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 PPPHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_112 PPPHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLE 250 260 270 280 290 300 310 320 330 pF1KE6 GAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ ::::::::::::::::::::::::::::::::::::: NP_112 GAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ 310 320 330 >>NP_663612 (OMIM: 181500,607252) apolipoprotein L2 [Hom (337 aa) initn: 2163 init1: 2163 opt: 2163 Z-score: 2388.7 bits: 450.4 E(85289): 2.6e-126 Smith-Waterman score: 2163; 100.0% identity (100.0% similar) in 337 aa overlap (1-337:1-337) 10 20 30 40 50 60 pF1KE6 MNPESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_663 MNPESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 SHMVMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_663 SHMVMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 NSVGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_663 NSVGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 ARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_663 ARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 PPPHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_663 PPPHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLE 250 260 270 280 290 300 310 320 330 pF1KE6 GAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ ::::::::::::::::::::::::::::::::::::: NP_663 GAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ 310 320 330 >>XP_016884213 (OMIM: 181500,607252) PREDICTED: apolipop (449 aa) initn: 2163 init1: 2163 opt: 2163 Z-score: 2387.0 bits: 450.5 E(85289): 3.2e-126 Smith-Waterman score: 2163; 100.0% identity (100.0% similar) in 337 aa overlap (1-337:113-449) 10 20 30 pF1KE6 MNPESSIFIEDYLKYFQDQVSRENLLQLLT :::::::::::::::::::::::::::::: XP_016 AGTRVKENLPVWTVTGELQGKPLGNPAAGTMNPESSIFIEDYLKYFQDQVSRENLLQLLT 90 100 110 120 130 140 40 50 60 70 80 90 pF1KE6 DDEAWNGFVAAAELPRDEADELRKALNKLASHMVMKDKNRHDKDQQHRQWFLKEFPRLKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DDEAWNGFVAAAELPRDEADELRKALNKLASHMVMKDKNRHDKDQQHRQWFLKEFPRLKR 150 160 170 180 190 200 100 110 120 130 140 150 pF1KE6 ELEDHIRKLRALAEEVEQVHRGTTIANVVSNSVGTTSGILTLLGLGLAPFTEGISFVLLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ELEDHIRKLRALAEEVEQVHRGTTIANVVSNSVGTTSGILTLLGLGLAPFTEGISFVLLD 210 220 230 240 250 260 160 170 180 190 200 210 pF1KE6 TGMGLGAAAAVAGITCSVVELVNKLRARAQARNLDQSGTNVAKVMKEFVGGNTPNVLTLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TGMGLGAAAAVAGITCSVVELVNKLRARAQARNLDQSGTNVAKVMKEFVGGNTPNVLTLV 270 280 290 300 310 320 220 230 240 250 260 270 pF1KE6 DNWYQVTQGIGRNIRAIRRARANPQLGAYAPPPHVIGRISAEGGEQVERVVEGPAQAMSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DNWYQVTQGIGRNIRAIRRARANPQLGAYAPPPHVIGRISAEGGEQVERVVEGPAQAMSR 330 340 350 360 370 380 280 290 300 310 320 330 pF1KE6 GTMIVGAATGGILLLLDVVSLAYESKHLLEGAKSESAEELKKRAQELEGKLNFLTKIHEM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GTMIVGAATGGILLLLDVVSLAYESKHLLEGAKSESAEELKKRAQELEGKLNFLTKIHEM 390 400 410 420 430 440 pF1KE6 LQPGQDQ ::::::: XP_016 LQPGQDQ >>NP_001130013 (OMIM: 603743,612551) apolipoprotein L1 i (380 aa) initn: 1267 init1: 973 opt: 1262 Z-score: 1395.4 bits: 266.7 E(85289): 5.5e-71 Smith-Waterman score: 1262; 61.8% identity (82.8% similar) in 338 aa overlap (1-336:42-379) 10 20 30 pF1KE6 MNPESSIFIEDYLKYFQDQVSRENLLQLLT :.::::::::: .:::...:: .::: ::: NP_001 LCIWVQQNVPSGTDTGDPQSKPLGDWAAGTMDPESSIFIEDAIKYFKEKVSTQNLLLLLT 20 30 40 50 60 70 40 50 60 70 80 90 pF1KE6 DDEAWNGFVAAAELPRDEADELRKALNKLASHMVMKDKNRHDKDQQHRQWFLKEFPRLKR :.::::::::::::::.:::::::::..:: .:.::::: ::: ::.:.:::::::::: NP_001 DNEAWNGFVAAAELPRNEADELRKALDNLARQMIMKDKNWHDKGQQYRNWFLKEFPRLKS 80 90 100 110 120 130 100 110 120 130 140 150 pF1KE6 ELEDHIRKLRALAEEVEQVHRGTTIANVVSNSVGTTSGILTLLGLGLAPFTEGISFVLLD ::::.::.:::::. :..::.:::::::::.:.. .::::::.:.:::::::: :.:::. NP_001 ELEDNIRRLRALADGVQKVHKGTTIANVVSGSLSISSGILTLVGMGLAPFTEGGSLVLLE 140 150 160 170 180 190 160 170 180 190 200 210 pF1KE6 TGMGLGAAAAVAGITCSVVELVNKLRARAQARNLDQSGTNVAKVMKEFVGGNTPNVLTLV :: :: .::..::: :... .: ..:::..: .. . : ..::.: : : :.:. NP_001 PGMELGITAALTGITSSTMDYGKKWWTQAQAHDLVIKSLDKLKEVREFLGENISNFLSLA 200 210 220 230 240 250 220 230 240 250 260 pF1KE6 DNWYQVTQGIGRNIRAIRRARANPQL--GAYAPPPHVIGRISAEGGEQVERVVEGPAQAM : ::.:.:::..:::.:::::: : : : :.: ::::.::::::: : : NP_001 GNTYQLTRGIGKDIRALRRARANLQSVPHASASRPRVTEPISAESGEQVERVNEPSILEM 260 270 280 290 300 310 270 280 290 300 310 320 pF1KE6 SRGTMIVGAATGGILLLLDVVSLAYESKHLLEGAKSESAEELKKRAQELEGKLNFLTKIH :::. .. .: ...:.:::: :.:::::: ::::::.:::::: ::::: :::.:.. . NP_001 SRGVKLTDVAPVSFFLVLDVVYLVYESKHLHEGAKSETAEELKKVAQELEEKLNILNNNY 320 330 340 350 360 370 330 pF1KE6 EMLQPGQDQ ..:: :. NP_001 KILQADQEL 380 >>XP_005261853 (OMIM: 603743,612551) PREDICTED: apolipop (380 aa) initn: 1267 init1: 973 opt: 1262 Z-score: 1395.4 bits: 266.7 E(85289): 5.5e-71 Smith-Waterman score: 1262; 61.8% identity (82.8% similar) in 338 aa overlap (1-336:42-379) 10 20 30 pF1KE6 MNPESSIFIEDYLKYFQDQVSRENLLQLLT :.::::::::: .:::...:: .::: ::: XP_005 LCIWVQQNVPSGTDTGDPQSKPLGDWAAGTMDPESSIFIEDAIKYFKEKVSTQNLLLLLT 20 30 40 50 60 70 40 50 60 70 80 90 pF1KE6 DDEAWNGFVAAAELPRDEADELRKALNKLASHMVMKDKNRHDKDQQHRQWFLKEFPRLKR :.::::::::::::::.:::::::::..:: .:.::::: ::: ::.:.:::::::::: XP_005 DNEAWNGFVAAAELPRNEADELRKALDNLARQMIMKDKNWHDKGQQYRNWFLKEFPRLKS 80 90 100 110 120 130 100 110 120 130 140 150 pF1KE6 ELEDHIRKLRALAEEVEQVHRGTTIANVVSNSVGTTSGILTLLGLGLAPFTEGISFVLLD ::::.::.:::::. :..::.:::::::::.:.. .::::::.:.:::::::: :.:::. XP_005 ELEDNIRRLRALADGVQKVHKGTTIANVVSGSLSISSGILTLVGMGLAPFTEGGSLVLLE 140 150 160 170 180 190 160 170 180 190 200 210 pF1KE6 TGMGLGAAAAVAGITCSVVELVNKLRARAQARNLDQSGTNVAKVMKEFVGGNTPNVLTLV :: :: .::..::: :... .: ..:::..: .. . : ..::.: : : :.:. XP_005 PGMELGITAALTGITSSTMDYGKKWWTQAQAHDLVIKSLDKLKEVREFLGENISNFLSLA 200 210 220 230 240 250 220 230 240 250 260 pF1KE6 DNWYQVTQGIGRNIRAIRRARANPQL--GAYAPPPHVIGRISAEGGEQVERVVEGPAQAM : ::.:.:::..:::.:::::: : : : :.: ::::.::::::: : : XP_005 GNTYQLTRGIGKDIRALRRARANLQSVPHASASRPRVTEPISAESGEQVERVNEPSILEM 260 270 280 290 300 310 270 280 290 300 310 320 pF1KE6 SRGTMIVGAATGGILLLLDVVSLAYESKHLLEGAKSESAEELKKRAQELEGKLNFLTKIH :::. .. .: ...:.:::: :.:::::: ::::::.:::::: ::::: :::.:.. . XP_005 SRGVKLTDVAPVSFFLVLDVVYLVYESKHLHEGAKSETAEELKKVAQELEEKLNILNNNY 320 330 340 350 360 370 330 pF1KE6 EMLQPGQDQ ..:: :. XP_005 KILQADQEL 380 337 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 12:04:52 2016 done: Tue Nov 8 12:04:53 2016 Total Scan time: 5.130 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]