FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5512, 360 aa 1>>>pF1KE5512 360 - 360 aa - 360 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6589+/-0.000318; mu= 15.5251+/- 0.020 mean_var=83.1423+/-16.778, 0's: 0 Z-trim(117.5): 3 B-trim: 958 in 2/53 Lambda= 0.140658 statistics sampled from 29542 (29545) to 29542 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.346), width: 16 Scan time: 7.180 The best scores are: opt bits E(85289) NP_001036046 (OMIM: 607902) snurportin-1 [Homo sap ( 360) 2472 511.1 1.6e-144 NP_005692 (OMIM: 607902) snurportin-1 [Homo sapien ( 360) 2472 511.1 1.6e-144 NP_001036053 (OMIM: 607902) snurportin-1 [Homo sap ( 360) 2472 511.1 1.6e-144 >>NP_001036046 (OMIM: 607902) snurportin-1 [Homo sapiens (360 aa) initn: 2472 init1: 2472 opt: 2472 Z-score: 2715.8 bits: 511.1 E(85289): 1.6e-144 Smith-Waterman score: 2472; 100.0% identity (100.0% similar) in 360 aa overlap (1-360:1-360) 10 20 30 40 50 60 pF1KE5 MEELSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MEELSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 HARRLAEDDWTGMESEEENKKDDEEMDIDTVKKLPKHYANQLMLSEWLIDVPSDLGQEWI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 HARRLAEDDWTGMESEEENKKDDEEMDIDTVKKLPKHYANQLMLSEWLIDVPSDLGQEWI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 VVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRNSTAKDYTILDCIYNEVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRNSTAKDYTILDCIYNEVN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCTPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCTPE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 SLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVLGVAVPAGPLTTKPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVLGVAVPAGPLTTKPD 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 YAGHQLQQIMEHKKSQKEGMKEKLTHKASENGHYELEHLSTPKLKGSSHSPDHPGCLMEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YAGHQLQQIMEHKKSQKEGMKEKLTHKASENGHYELEHLSTPKLKGSSHSPDHPGCLMEN 310 320 330 340 350 360 >>NP_005692 (OMIM: 607902) snurportin-1 [Homo sapiens] (360 aa) initn: 2472 init1: 2472 opt: 2472 Z-score: 2715.8 bits: 511.1 E(85289): 1.6e-144 Smith-Waterman score: 2472; 100.0% identity (100.0% similar) in 360 aa overlap (1-360:1-360) 10 20 30 40 50 60 pF1KE5 MEELSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MEELSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 HARRLAEDDWTGMESEEENKKDDEEMDIDTVKKLPKHYANQLMLSEWLIDVPSDLGQEWI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 HARRLAEDDWTGMESEEENKKDDEEMDIDTVKKLPKHYANQLMLSEWLIDVPSDLGQEWI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 VVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRNSTAKDYTILDCIYNEVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 VVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRNSTAKDYTILDCIYNEVN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCTPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCTPE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 SLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVLGVAVPAGPLTTKPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 SLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVLGVAVPAGPLTTKPD 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 YAGHQLQQIMEHKKSQKEGMKEKLTHKASENGHYELEHLSTPKLKGSSHSPDHPGCLMEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 YAGHQLQQIMEHKKSQKEGMKEKLTHKASENGHYELEHLSTPKLKGSSHSPDHPGCLMEN 310 320 330 340 350 360 >>NP_001036053 (OMIM: 607902) snurportin-1 [Homo sapiens (360 aa) initn: 2472 init1: 2472 opt: 2472 Z-score: 2715.8 bits: 511.1 E(85289): 1.6e-144 Smith-Waterman score: 2472; 100.0% identity (100.0% similar) in 360 aa overlap (1-360:1-360) 10 20 30 40 50 60 pF1KE5 MEELSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MEELSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 HARRLAEDDWTGMESEEENKKDDEEMDIDTVKKLPKHYANQLMLSEWLIDVPSDLGQEWI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 HARRLAEDDWTGMESEEENKKDDEEMDIDTVKKLPKHYANQLMLSEWLIDVPSDLGQEWI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 VVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRNSTAKDYTILDCIYNEVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRNSTAKDYTILDCIYNEVN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCTPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCTPE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 SLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVLGVAVPAGPLTTKPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVLGVAVPAGPLTTKPD 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 YAGHQLQQIMEHKKSQKEGMKEKLTHKASENGHYELEHLSTPKLKGSSHSPDHPGCLMEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YAGHQLQQIMEHKKSQKEGMKEKLTHKASENGHYELEHLSTPKLKGSSHSPDHPGCLMEN 310 320 330 340 350 360 360 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 01:21:58 2016 done: Tue Nov 8 01:21:59 2016 Total Scan time: 7.180 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]