FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4334, 344 aa 1>>>pF1KE4334 344 - 344 aa - 344 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.4128+/-0.000934; mu= 11.9818+/- 0.056 mean_var=144.1781+/-27.442, 0's: 0 Z-trim(111.1): 73 B-trim: 0 in 0/52 Lambda= 0.106813 statistics sampled from 12019 (12091) to 12019 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.371), width: 16 Scan time: 2.590 The best scores are: opt bits E(32554) CCDS3959.1 FST gene_id:10468|Hs108|chr5 ( 344) 2503 397.2 1e-110 CCDS43315.1 FST gene_id:10468|Hs108|chr5 ( 317) 2325 369.7 1.8e-102 CCDS12040.1 FSTL3 gene_id:10272|Hs108|chr19 ( 263) 817 137.3 1.4e-32 CCDS30551.1 AGRN gene_id:375790|Hs108|chr1 (2045) 428 78.3 6.3e-14 >>CCDS3959.1 FST gene_id:10468|Hs108|chr5 (344 aa) initn: 2503 init1: 2503 opt: 2503 Z-score: 2101.1 bits: 397.2 E(32554): 1e-110 Smith-Waterman score: 2503; 100.0% identity (100.0% similar) in 344 aa overlap (1-344:1-344) 10 20 30 40 50 60 pF1KE4 MVRARHQPGGLCLLLLLLCQFMEDRSAQAGNCWLRQAKNGRCQVLYKTELSKEECCSTGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS39 MVRARHQPGGLCLLLLLLCQFMEDRSAQAGNCWLRQAKNGRCQVLYKTELSKEECCSTGR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 LSTSWTEEDVNDNTLFKWMIFNGGAPNCIPCKETCENVDCGPGKKCRMNKKNKPRCVCAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS39 LSTSWTEEDVNDNTLFKWMIFNGGAPNCIPCKETCENVDCGPGKKCRMNKKNKPRCVCAP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 DCSNITWKGPVCGLDGKTYRNECALLKARCKEQPELEVQYQGRCKKTCRDVFCPGSSTCV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS39 DCSNITWKGPVCGLDGKTYRNECALLKARCKEQPELEVQYQGRCKKTCRDVFCPGSSTCV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 VDQTNNAYCVTCNRICPEPASSEQYLCGNDGVTYSSACHLRKATCLLGRSIGLAYEGKCI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS39 VDQTNNAYCVTCNRICPEPASSEQYLCGNDGVTYSSACHLRKATCLLGRSIGLAYEGKCI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 KAKSCEDIQCTGGKKCLWDFKVGRGRCSLCDELCPDSKSDEPVCASDNATYASECAMKEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS39 KAKSCEDIQCTGGKKCLWDFKVGRGRCSLCDELCPDSKSDEPVCASDNATYASECAMKEA 250 260 270 280 290 300 310 320 330 340 pF1KE4 ACSSGVLLEVKHSGSCNSISEDTEEEEEDEDQDYSFPISSILEW :::::::::::::::::::::::::::::::::::::::::::: CCDS39 ACSSGVLLEVKHSGSCNSISEDTEEEEEDEDQDYSFPISSILEW 310 320 330 340 >>CCDS43315.1 FST gene_id:10468|Hs108|chr5 (317 aa) initn: 2325 init1: 2325 opt: 2325 Z-score: 1953.3 bits: 369.7 E(32554): 1.8e-102 Smith-Waterman score: 2325; 100.0% identity (100.0% similar) in 317 aa overlap (1-317:1-317) 10 20 30 40 50 60 pF1KE4 MVRARHQPGGLCLLLLLLCQFMEDRSAQAGNCWLRQAKNGRCQVLYKTELSKEECCSTGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 MVRARHQPGGLCLLLLLLCQFMEDRSAQAGNCWLRQAKNGRCQVLYKTELSKEECCSTGR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 LSTSWTEEDVNDNTLFKWMIFNGGAPNCIPCKETCENVDCGPGKKCRMNKKNKPRCVCAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 LSTSWTEEDVNDNTLFKWMIFNGGAPNCIPCKETCENVDCGPGKKCRMNKKNKPRCVCAP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 DCSNITWKGPVCGLDGKTYRNECALLKARCKEQPELEVQYQGRCKKTCRDVFCPGSSTCV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 DCSNITWKGPVCGLDGKTYRNECALLKARCKEQPELEVQYQGRCKKTCRDVFCPGSSTCV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 VDQTNNAYCVTCNRICPEPASSEQYLCGNDGVTYSSACHLRKATCLLGRSIGLAYEGKCI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 VDQTNNAYCVTCNRICPEPASSEQYLCGNDGVTYSSACHLRKATCLLGRSIGLAYEGKCI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 KAKSCEDIQCTGGKKCLWDFKVGRGRCSLCDELCPDSKSDEPVCASDNATYASECAMKEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 KAKSCEDIQCTGGKKCLWDFKVGRGRCSLCDELCPDSKSDEPVCASDNATYASECAMKEA 250 260 270 280 290 300 310 320 330 340 pF1KE4 ACSSGVLLEVKHSGSCNSISEDTEEEEEDEDQDYSFPISSILEW ::::::::::::::::: CCDS43 ACSSGVLLEVKHSGSCN 310 >>CCDS12040.1 FSTL3 gene_id:10272|Hs108|chr19 (263 aa) initn: 693 init1: 373 opt: 817 Z-score: 698.4 bits: 137.3 E(32554): 1.4e-32 Smith-Waterman score: 817; 48.1% identity (77.1% similar) in 214 aa overlap (27-239:33-243) 10 20 30 40 50 pF1KE4 MVRARHQPGGLCLLLLLLCQFMEDRSAQAGNCWLRQAKNGRCQVLYKTELSKEECC : .: :::.:.... :... .:.... ::: CCDS12 PGAPGPLWPLPWGALAWAVGFVSSMGSGNPAPGGVCWLQQGQEATCSLVLQTDVTRAECC 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE4 STGRLSTSWTEEDVNDNTLFKWMIFNGGAPNCIPCKETCENVDCGPGKKCRMNKKNKPRC ..: ..:.:.. : . . . : : . .:.:::..:..:.::::: ::: ..::: CCDS12 ASGNIDTAWSNLTHPGNKI-NLLGFLGLV-HCLPCKDSCDGVECGPGKACRM-LGGRPRC 70 80 90 100 110 120 130 140 150 160 170 pF1KE4 VCAPDCSNITWKGPVCGLDGKTYRNECALLKARCKEQPELEVQYQGRCKKTCRDVFCPGS ::::::.. . ::: :: :::.:: : :::. .:.: :.:.:::.:.:. : :: CCDS12 ECAPDCSGLPARLQVCGSDGATYRDECELRAARCRGHPDLSVMYRGRCRKSCEHVVCPRP 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE4 STCVVDQTNNAYCVTCNRI-CPEPASSEQYLCGNDGVTYSSACHLRKATCLLGRSIGLAY ..::::::..:.::.: :: :.: : ::::..::: :.::.:.:::.::::::. . CCDS12 QSCVVDQTGSAHCVVCRAAPCPVPSSPGQELCGNNNVTYISSCHMRQATCFLGRSIGVRH 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE4 EGKCIKAKSCEDIQCTGGKKCLWDFKVGRGRCSLCDELCPDSKSDEPVCASDNATYASEC :.: CCDS12 AGSCAGTPEEPPGGESAEEEENFV 240 250 260 >>CCDS30551.1 AGRN gene_id:375790|Hs108|chr1 (2045 aa) initn: 419 init1: 172 opt: 428 Z-score: 363.5 bits: 78.3 E(32554): 6.3e-14 Smith-Waterman score: 461; 34.1% identity (59.5% similar) in 232 aa overlap (91-318:395-601) 70 80 90 100 110 pF1KE4 LSTSWTEEDVNDNTLFKWMIFNGGAPNCIPCKETCE-NVDCGPGKKCRMNKKNKPRCVCA : : :. :. : ......::: : CCDS30 ENDCVMGRSGAARGLLLQKVRSGQCQGRDQCPEPCRFNAVC-------LSRRGRPRCSCD 370 380 390 400 410 120 130 140 150 160 170 pF1KE4 PDCSNITWKGPVCGLDGKTYRNECALLKARCKEQPELEVQYQGRCKKT---CRDVFCPGS . ... :::. ::.:: ..: .:.:..: . ..:: : .. : : : . CCDS30 RVTCDGAYR-PVCAQDGRTYDSDCWRQQAECRQQRAIPSKHQGPCDQAPSPCLGVQCAFG 420 430 440 450 460 470 180 190 200 210 220 230 pF1KE4 STCVVDQTNNAYCVTCNRICPEPASSEQYLCGNDGVTYSSACHLRKATCLLGRSIGLAYE .::.: ....: : : . : .: . .::.:::::.:::.:. ..: ::: : .: . CCDS30 ATCAV-KNGQAAC-ECLQAC---SSLYDPVCGSDGVTYGSACELEATACTLGREIQVARK 480 490 500 510 520 530 240 250 260 270 280 290 pF1KE4 GKCIKAKSCEDIQCTGGKKCLWDFKVGRGRCSLCDELCPDSKSDEPVCASDNATYASECA : : . : :: : : .. ::: .: : .:::.::. :: ::: CCDS30 GPCDR---CG--QCRFGALC----EAETGRC-VCPSEC--VALAQPVCGSDGHTYPSECM 540 550 560 570 300 310 320 330 340 pF1KE4 MKEAACSSGVLLEVKHSGSCNSISEDTEEEEEDEDQDYSFPISSILEW .. ::. . :.: .: :.. CCDS30 LHVHACTHQISLHVASAGPCETCGDAVCAFGAVCSAGQCVCPRCEHPPPGPVCGSDGVTY 580 590 600 610 620 630 >-- initn: 419 init1: 172 opt: 428 Z-score: 363.5 bits: 78.3 E(32554): 6.3e-14 Smith-Waterman score: 428; 29.4% identity (61.5% similar) in 231 aa overlap (93-316:170-389) 70 80 90 100 110 120 pF1KE4 TSWTEEDVNDNTLFKWMIFNGGAPNCIPCKETCENVDCGPGKKCRMNKKNKPR--CVCAP ..:... :: : :. : .. : ::: CCDS30 RITLRNLEEVEFCVEDKPGTHFTPVPPTPPDACRGMLCGFGAVCEPNAEGPGRASCVCKK 140 150 160 170 180 190 130 140 150 160 170 pF1KE4 D-CSNITWKGPVCGLDGKTYRNECALLKARCKEQPELEVQYQGRC--KKTCRDVFCPGSS . : ... .:::: :..:: ::: : .:.:..: .... .: : . : .: : .: CCDS30 SPCPSVV--APVCGSDASTYSNECELQRAQCSQQRRIRLLSRGPCGSRDPCSNVTCSFGS 200 210 220 230 240 250 180 190 200 210 220 230 pF1KE4 TCVVDQTNNAYCVTCNRICPEP--ASSEQYLCGNDGVTYSSACHLRKATCLLGRSIGLAY ::. .. .. ..: .:: .. : .::.::. : . :.: . .: ... . CCDS30 TCA--RSADGLTASC--LCPATCRGAPEGTVCGSDGADYPGECQLLRRACARQENVFKKF 260 270 280 290 300 310 240 250 260 270 280 290 pF1KE4 EGKCIKAKSCEDIQCTGGKKCLWDFKVGRGRCSLCDELCPDSKSDEPVCASDNATYASEC .: : :. ...: . .. : . : : :: .. :::..:..:: ..: CCDS30 DGPC---DPCQGALPDPSRSCRVNPRTRRPEMLLRPESCPARQA--PVCGDDGVTYENDC 320 330 340 350 360 300 310 320 330 340 pF1KE4 AMKEAACSSGVLLEVKHSGSCNSISEDTEEEEEDEDQDYSFPISSILEW .: ... . :.::. .::.: CCDS30 VMGRSGAARGLLLQKVRSGQCQGRDQCPEPCRFNAVCLSRRGRPRCSCDRVTCDGAYRPV 370 380 390 400 410 420 344 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 02:14:25 2016 done: Sun Nov 6 02:14:26 2016 Total Scan time: 2.590 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]