FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7768, 410 aa 1>>>pF1KB7768 410 - 410 aa - 410 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9225+/-0.000754; mu= 14.4420+/- 0.045 mean_var=85.9935+/-16.853, 0's: 0 Z-trim(110.1): 28 B-trim: 2 in 1/53 Lambda= 0.138306 statistics sampled from 11335 (11361) to 11335 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.349), width: 16 Scan time: 3.280 The best scores are: opt bits E(32554) CCDS31325.1 SIGIRR gene_id:59307|Hs108|chr11 ( 410) 2772 562.8 2e-160 CCDS3298.1 IL1RAP gene_id:3556|Hs108|chr3 ( 570) 319 73.5 5.9e-13 CCDS54696.1 IL1RAP gene_id:3556|Hs108|chr3 ( 687) 309 71.5 2.7e-12 >>CCDS31325.1 SIGIRR gene_id:59307|Hs108|chr11 (410 aa) initn: 2772 init1: 2772 opt: 2772 Z-score: 2993.4 bits: 562.8 E(32554): 2e-160 Smith-Waterman score: 2772; 99.8% identity (100.0% similar) in 410 aa overlap (1-410:1-410) 10 20 30 40 50 60 pF1KB7 MPGVCDRAPDFLSPSEDQVLRPALGSSVALNCTAWVVSGPHCSLPSVQWLKDGLPLGIGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MPGVCDRAPDFLSPSEDQVLRPALGSSVALNCTAWVVSGPHCSLPSVQWLKDGLPLGIGG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 HYSLHEYSWVKANLSEVLVSSVLGVNVTSTEVYGAFTCSIQNISFSSFTLQRAGPTSHVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 HYSLHEYSWVKANLSEVLVSSVLGVNVTSTEVYGAFTCSIQNISFSSFTLQRAGPTSHVA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 AVLASLLVLLALLLAALLYVKCRLNVLLWYQDAYGEVEINDGKLYDAYVSYSDCPEDRKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 AVLASLLVLLALLLAALLYVKCRLNVLLWYQDAYGEVEINDGKLYDAYVSYSDCPEDRKF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 VNFILKPQLERRRGYKLFLDDRDLLPRAEPSADLLVNLSRCRRLIVVLSDAFLSRAWCSH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 VNFILKPQLERRRGYKLFLDDRDLLPRAEPSADLLVNLSRCRRLIVVLSDAFLSRAWCSH 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB7 SFREGLCRLLELTRRPIFITFEGQRRDPAHPALRLLRQHRHLVTLLLWRPGSVTPSSDFW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 SFREGLCRLLELTRRPIFITFEGQRRDPAHPALRLLRQHRHLVTLLLWRPGSVTPSSDFW 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB7 KEVQLALPRKVRYRPVEGDPQTQLQDDKDPMLILRGRVPEGRALDSEVDPDPEGDLGVRG :::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 KEVQLALPRKVQYRPVEGDPQTQLQDDKDPMLILRGRVPEGRALDSEVDPDPEGDLGVRG 310 320 330 340 350 360 370 380 390 400 410 pF1KB7 PVFGEPSAPPHTSGVSLGESRSSEVDVSDLGSRNYSARTDFYCLVSKDDM :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 PVFGEPSAPPHTSGVSLGESRSSEVDVSDLGSRNYSARTDFYCLVSKDDM 370 380 390 400 410 >>CCDS3298.1 IL1RAP gene_id:3556|Hs108|chr3 (570 aa) initn: 241 init1: 194 opt: 319 Z-score: 346.1 bits: 73.5 E(32554): 5.9e-13 Smith-Waterman score: 319; 27.2% identity (57.3% similar) in 323 aa overlap (9-321:243-560) 10 20 30 pF1KB7 MPGVCDRAPDFLSPSEDQVLRPALGSSVALNCTAWVVS : . ::.. : . : . . ::.. : CCDS32 VVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYF-S 220 230 240 250 260 270 40 50 60 70 80 90 pF1KB7 GPHCSLPSVQWLKDGL-PLGIGGHYSLHEYSWVKANLSEVLVSSVLGVN-VTSTEVYGAF : : : :: : : ...: : .. . ...:... ::: .. .. CCDS32 FLMDSRNEVWWTIDGKKPDDITIDVTINE-SISHSRTEDETRTQILSIKKVTSEDLKRSY 280 290 300 310 320 330 100 110 120 130 140 150 pF1KB7 TC---SIQNISFSSFTLQRAGPTSHVAAVLA---SLLVLLALLLAALLYVKCRLNVLLWY .: : .. .. ... :. . .. :: . :::...: .. .: :...:.: CCDS32 VCHARSAKGEVAKAAKVKQKVPAPRYTVELACGFGATVLLVVILIVVYHVY-WLEMVLFY 340 350 360 370 380 160 170 180 190 200 pF1KB7 QDAYGEVE-INDGKLYDAYVSYSDCPEDRKFVNFILKPQLERRRGYKLFLDDRDLLPRAE . .: : : ::: :: ::::. :...:: . :. :: . :::: . ::: :: . CCDS32 RAHFGTDETILDGKEYDIYVSYARNAEEEEFVLLTLRGVLENEFGYKLCIFDRDSLPGGI 390 400 410 420 430 440 210 220 230 240 250 260 pF1KB7 PSADLLVNLSRCRRLIVVLSDAFLSRAWCSHSFREGLCRLLELTRRPIFITFEGQRRDPA . . : ... :::.:::: .. .. .... : : ... : . .. : . CCDS32 VTDETLSFIQKSRRLLVVLSPNYVLQG--TQALLELKAGLENMASRGNINVILVQYKAVK 450 460 470 480 490 500 270 280 290 300 310 320 pF1KB7 HPALRLLRQHRHLVTLLLWR-PGSVTPSSDFWKEVQLALPRKVRYRPVEGDPQTQLQDDK . .. :.. . ..:.. :. : :.. :::..:.:.: : : .: : CCDS32 ETKVKELKRAKTVLTVIKWKGEKSKYPQGRFWKQLQVAMPVKKSPRRSSSDEQGLSYSSL 510 520 530 540 550 560 330 340 350 360 370 380 pF1KB7 DPMLILRGRVPEGRALDSEVDPDPEGDLGVRGPVFGEPSAPPHTSGVSLGESRSSEVDVS CCDS32 KNV 570 >>CCDS54696.1 IL1RAP gene_id:3556|Hs108|chr3 (687 aa) initn: 240 init1: 195 opt: 309 Z-score: 334.1 bits: 71.5 E(32554): 2.7e-12 Smith-Waterman score: 309; 28.8% identity (56.7% similar) in 312 aa overlap (9-308:243-545) 10 20 30 pF1KB7 MPGVCDRAPDFLSPSEDQVLRPALGSSVALNCTAWVVS : . ::.. : . : . . ::.. : CCDS54 VVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYF-S 220 230 240 250 260 270 40 50 60 70 80 90 pF1KB7 GPHCSLPSVQWLKDGL-PLGIGGHYSLHEYSWVKANLSEVLVSSVLGVN-VTSTEVYGAF : : : :: : : ...: : .. . ...:... ::: .. .. CCDS54 FLMDSRNEVWWTIDGKKPDDITIDVTINE-SISHSRTEDETRTQILSIKKVTSEDLKRSY 280 290 300 310 320 330 100 110 120 130 140 150 pF1KB7 TC---SIQNISFSSFTLQRAGPTSHVAAVLA---SLLVLLALLLAALLYVKCRLNVLLWY .: : .. .. ... :. . .. :: . :::...: .. .: :...:.: CCDS54 VCHARSAKGEVAKAAKVKQKVPAPRYTVELACGFGATVLLVVILIVVYHVY-WLEMVLFY 340 350 360 370 380 160 170 180 190 200 pF1KB7 QDAYGEVE-INDGKLYDAYVSYSDCPEDRKFVNFILKPQLERRRGYKLFLDDRDLLPRAE . .: : : ::: :: ::::. :...:: . :. :: . :::: . ::: :: .. CCDS54 RAHFGTDETILDGKEYDIYVSYARNAEEEEFVLLTLRGVLENEFGYKLCIFDRDSLPGGN 390 400 410 420 430 440 210 220 230 240 250 260 pF1KB7 PSADLLVNLSRCRRLIVVLSDAFLSRAWCSH-SFREG-LCRLLELTRRPIFITFEGQRRD .. ..: ::.::::: .... : :. : .:. :. .:. : . . CCDS54 TVEAVFDFIQRSRRMIVVLSPDYVTEKSISMLEFKLGVMCQNSIATK---LIVVEYRPLE 450 460 470 480 490 500 270 280 290 300 310 320 pF1KB7 PAHPALRLLRQHRHLVTLLLWR-PGSVTPSSDFWKEVQLALPRKVRYRPVEGDPQTQLQD ::.. :.. :... :. : .: ::: ..:::: CCDS54 HPHPGILQLKES---VSFVSWKGEKSKHSGSKFWKALRLALPLRSLSASSGWNESCSSQS 510 520 530 540 550 560 330 340 350 360 370 380 pF1KB7 DKDPMLILRGRVPEGRALDSEVDPDPEGDLGVRGPVFGEPSAPPHTSGVSLGESRSSEVD CCDS54 DISLDHVQRRRSRLKEPPELQSSERAAGSPPAPGTMSKHRGKSSATCRCCVTYCEGENHL 570 580 590 600 610 620 410 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:31:39 2016 done: Mon Nov 7 02:31:39 2016 Total Scan time: 3.280 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]