FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5125, 98 aa 1>>>pF1KE5125 98 - 98 aa - 98 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8989+/-0.000574; mu= 10.7921+/- 0.035 mean_var=49.5316+/- 9.689, 0's: 0 Z-trim(110.4): 17 B-trim: 0 in 0/50 Lambda= 0.182235 statistics sampled from 11612 (11618) to 11612 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.357), width: 16 Scan time: 1.120 The best scores are: opt bits E(32554) CCDS13701.1 CSTB gene_id:1476|Hs108|chr21 ( 98) 647 176.9 1.7e-45 CCDS3011.1 CSTA gene_id:1475|Hs108|chr3 ( 98) 345 97.5 1.4e-21 >>CCDS13701.1 CSTB gene_id:1476|Hs108|chr21 (98 aa) initn: 647 init1: 647 opt: 647 Z-score: 930.1 bits: 176.9 E(32554): 1.7e-45 Smith-Waterman score: 647; 100.0% identity (100.0% similar) in 98 aa overlap (1-98:1-98) 10 20 30 40 50 60 pF1KE5 MMCGAPSATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MMCGAPSATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVG 10 20 30 40 50 60 70 80 90 pF1KE5 DEDFVHLRVFQSLPHENKPLTLSNYQTNKAKHDELTYF :::::::::::::::::::::::::::::::::::::: CCDS13 DEDFVHLRVFQSLPHENKPLTLSNYQTNKAKHDELTYF 70 80 90 >>CCDS3011.1 CSTA gene_id:1475|Hs108|chr3 (98 aa) initn: 350 init1: 330 opt: 345 Z-score: 501.0 bits: 97.5 E(32554): 1.4e-21 Smith-Waterman score: 345; 53.1% identity (83.7% similar) in 98 aa overlap (1-98:1-98) 10 20 30 40 50 60 pF1KE5 MMCGAPSATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVG :. :. : ..::: : :.:.:.:. ::::: :. . ..::..:.::::::::.:::..: CCDS30 MIPGGLSEAKPATPEIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQVVAGTNYYIKVRAG 10 20 30 40 50 60 70 80 90 pF1KE5 DEDFVHLRVFQSLPHENKPLTLSNYQTNKAKHDELTYF :. ..::.::.::: .:. :.:..::..: : :::: : CCDS30 DNKYMHLKVFKSLPGQNEDLVLTGYQVDKNKDDELTGF 70 80 90 98 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 21:38:23 2016 done: Mon Nov 7 21:38:23 2016 Total Scan time: 1.120 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]