FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9659, 222 aa 1>>>pF1KE9659 222 - 222 aa - 222 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.9739+/-0.000878; mu= 7.4627+/- 0.053 mean_var=117.4765+/-22.969, 0's: 0 Z-trim(109.0): 29 B-trim: 0 in 0/53 Lambda= 0.118331 statistics sampled from 10574 (10589) to 10574 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.325), width: 16 Scan time: 1.710 The best scores are: opt bits E(32554) CCDS12986.1 CHMP2A gene_id:27243|Hs108|chr19 ( 222) 1379 245.8 1.7e-65 CCDS2918.1 CHMP2B gene_id:25978|Hs108|chr3 ( 213) 427 83.2 1.4e-16 CCDS58840.1 CHMP2B gene_id:25978|Hs108|chr3 ( 172) 346 69.3 1.7e-12 >>CCDS12986.1 CHMP2A gene_id:27243|Hs108|chr19 (222 aa) initn: 1379 init1: 1379 opt: 1379 Z-score: 1289.4 bits: 245.8 E(32554): 1.7e-65 Smith-Waterman score: 1379; 100.0% identity (100.0% similar) in 222 aa overlap (1-222:1-222) 10 20 30 40 50 60 pF1KE9 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELS 130 140 150 160 170 180 190 200 210 220 pF1KE9 NLPSTGGSLSVAAGGKKAEAAASALADADADLEERLKNLRRD :::::::::::::::::::::::::::::::::::::::::: CCDS12 NLPSTGGSLSVAAGGKKAEAAASALADADADLEERLKNLRRD 190 200 210 220 >>CCDS2918.1 CHMP2B gene_id:25978|Hs108|chr3 (213 aa) initn: 482 init1: 365 opt: 427 Z-score: 411.3 bits: 83.2 E(32554): 1.4e-16 Smith-Waterman score: 427; 33.3% identity (69.8% similar) in 222 aa overlap (1-222:1-213) 10 20 30 40 50 60 pF1KE9 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR : :: ..:: ........: : ..: . :.: :: :::.. .:::::: :. .: . CCDS29 MASLF-KKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACK 10 20 30 40 50 70 80 90 100 110 120 pF1KE9 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP ..::.::. :. . . ... ..: . ....:. .:: ::. ..:.: ..:... CCDS29 VLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQ 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE9 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELS . . :..:... :.: :::.::..:: . .:::::. .:.:::::.:. .. ... CCDS29 KTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMA 120 130 140 150 160 170 190 200 210 220 pF1KE9 NLPSTGGSLSVAAGGKKAEAAASALADADADLEERLKNLRRD . ::.. :: :. .: :. : : ..:..:: : : CCDS29 KAPSAARSLPSASTSK---ATIS-----DEEIERQLKALGVD 180 190 200 210 >>CCDS58840.1 CHMP2B gene_id:25978|Hs108|chr3 (172 aa) initn: 371 init1: 336 opt: 346 Z-score: 338.0 bits: 69.3 E(32554): 1.7e-12 Smith-Waterman score: 346; 33.3% identity (70.1% similar) in 177 aa overlap (46-222:4-172) 20 30 40 50 60 70 pF1KE9 RQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRK .:::::: :. .: ...::.::. :. . CCDS58 MELEIKKMAKIGNKEACKVLAKQLVHLRKQKTR 10 20 30 80 90 100 110 120 130 pF1KE9 FVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEI . ... ..: . ....:. .:: ::. ..:.: ..:... . . :..:... CCDS58 TFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMK 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE9 MDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLPSTGGSLSVAAGG :.: :::.::..:: . .:::::. .:.:::::.:. .. .... ::.. :: :. . CCDS58 MEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSASTS 100 110 120 130 140 150 200 210 220 pF1KE9 KKAEAAASALADADADLEERLKNLRRD : :. : : ..:..:: : : CCDS58 K---ATIS-----DEEIERQLKALGVD 160 170 222 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 18:54:20 2016 done: Mon Nov 7 18:54:21 2016 Total Scan time: 1.710 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]