FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1509, 366 aa 1>>>pF1KE1509 366 - 366 aa - 366 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9146+/-0.000323; mu= 19.9100+/- 0.020 mean_var=88.3414+/-17.664, 0's: 0 Z-trim(117.0): 140 B-trim: 0 in 0/54 Lambda= 0.136456 statistics sampled from 28398 (28566) to 28398 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.335), width: 16 Scan time: 8.850 The best scores are: opt bits E(85289) NP_001229971 (OMIM: 142840,177900,609423) HLA clas ( 366) 2326 467.7 1.8e-131 NP_002108 (OMIM: 142840,177900,609423) HLA class I ( 366) 2322 466.9 3.1e-131 NP_005505 (OMIM: 106300,142830,608579) major histo ( 362) 2191 441.1 1.8e-123 NP_002107 (OMIM: 142800,608579) HLA class I histoc ( 365) 2096 422.4 7.8e-118 NP_001229687 (OMIM: 142800,608579) HLA class I his ( 365) 2062 415.7 8e-116 XP_016885777 (OMIM: 142800,608579) PREDICTED: HLA ( 362) 2051 413.6 3.6e-115 XP_005275388 (OMIM: 142800,608579) PREDICTED: HLA ( 391) 2051 413.6 3.8e-115 NP_002118 (OMIM: 142871,600807) HLA class I histoc ( 338) 1908 385.4 1e-106 XP_016866305 (OMIM: 142871,600807) PREDICTED: HLA ( 343) 1908 385.4 1e-106 NP_005507 (OMIM: 143010) HLA class I histocompatib ( 358) 1895 382.9 6.3e-106 XP_011512859 (OMIM: 106300,142830,608579) PREDICTE ( 323) 1873 378.5 1.2e-104 XP_016866298 (OMIM: 143010) PREDICTED: HLA class I ( 359) 1862 376.4 5.7e-104 XP_016866302 (OMIM: 143110) PREDICTED: HLA class I ( 388) 1855 375.0 1.5e-103 XP_016866301 (OMIM: 143110) PREDICTED: HLA class I ( 420) 1855 375.1 1.6e-103 XP_016866299 (OMIM: 143110) PREDICTED: HLA class I ( 435) 1855 375.1 1.7e-103 NP_001091949 (OMIM: 143110) HLA class I histocompa ( 442) 1855 375.1 1.7e-103 NP_061823 (OMIM: 143110) HLA class I histocompatib ( 346) 1848 373.6 3.7e-103 XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343) 1831 370.2 3.8e-102 XP_016866300 (OMIM: 143110) PREDICTED: HLA class I ( 431) 1823 368.8 1.3e-101 XP_016866296 (OMIM: 143010) PREDICTED: HLA class I ( 399) 1814 367.0 4.2e-101 XP_016866297 (OMIM: 143010) PREDICTED: HLA class I ( 399) 1814 367.0 4.2e-101 XP_016866303 (OMIM: 143110) PREDICTED: HLA class I ( 324) 1245 254.8 1.9e-67 XP_016866304 (OMIM: 143110) PREDICTED: HLA class I ( 228) 1238 253.3 4e-67 NP_001091948 (OMIM: 143110) HLA class I histocompa ( 254) 1074 221.1 2.2e-57 NP_001522 (OMIM: 600764) major histocompatibility ( 341) 784 164.1 4.2e-40 XP_016866307 (OMIM: 142871,600807) PREDICTED: HLA ( 246) 776 162.4 1e-39 XP_016866306 (OMIM: 142871,600807) PREDICTED: HLA ( 246) 776 162.4 1e-39 XP_011512845 (OMIM: 104300,176100,176200,235200,61 ( 348) 759 159.2 1.3e-38 NP_000401 (OMIM: 104300,176100,176200,235200,61263 ( 348) 759 159.2 1.3e-38 NP_001287678 (OMIM: 104300,176100,176200,235200,61 ( 337) 750 157.4 4.3e-38 NP_620578 (OMIM: 104300,176100,176200,235200,61263 ( 325) 711 149.7 8.6e-36 NP_001176 (OMIM: 194460) zinc-alpha-2-glycoprotein ( 298) 666 140.8 3.8e-33 NP_620576 (OMIM: 104300,176100,176200,235200,61263 ( 260) 600 127.8 2.8e-29 XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254) 553 118.5 1.7e-26 NP_001181929 (OMIM: 600764) major histocompatibili ( 249) 530 114.0 3.8e-25 NP_001181964 (OMIM: 600764) major histocompatibili ( 214) 529 113.7 4e-25 NP_000238 (OMIM: 600169) MHC class I polypeptide-r ( 383) 514 111.0 4.5e-24 NP_005922 (OMIM: 602436) MHC class I polypeptide-r ( 383) 506 109.4 1.4e-23 NP_001170990 (OMIM: 600169) MHC class I polypeptid ( 332) 499 108.0 3.2e-23 NP_001276089 (OMIM: 602436) MHC class I polypeptid ( 351) 476 103.5 7.6e-22 NP_001129491 (OMIM: 601437) IgG receptor FcRn larg ( 365) 432 94.9 3.2e-19 NP_004098 (OMIM: 601437) IgG receptor FcRn large s ( 365) 432 94.9 3.2e-19 NP_001181928 (OMIM: 600764) major histocompatibili ( 296) 427 93.8 5.5e-19 NP_620573 (OMIM: 104300,176100,176200,235200,61263 ( 256) 412 90.7 3.8e-18 NP_620579 (OMIM: 104300,176100,176200,235200,61263 ( 168) 399 88.0 1.7e-17 NP_620577 (OMIM: 104300,176100,176200,235200,61263 ( 246) 384 85.2 1.7e-16 NP_620575 (OMIM: 104300,176100,176200,235200,61263 ( 334) 384 85.4 2.1e-16 NP_001297142 (OMIM: 600764) major histocompatibili ( 178) 373 82.9 6.2e-16 NP_620572 (OMIM: 104300,176100,176200,235200,61263 ( 242) 371 82.7 9.9e-16 NP_001276082 (OMIM: 600169) MHC class I polypeptid ( 235) 360 80.5 4.4e-15 >>NP_001229971 (OMIM: 142840,177900,609423) HLA class I (366 aa) initn: 2326 init1: 2326 opt: 2326 Z-score: 2481.2 bits: 467.7 E(85289): 1.8e-131 Smith-Waterman score: 2326; 93.2% identity (97.3% similar) in 366 aa overlap (1-366:1-366) 10 20 30 40 50 60 pF1KE1 MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPRFIAVGYVDDTQFVRF :::::::.:.:::::.:::::::::::::::: ::::::::::::::.:::::::::::: NP_001 MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRNLRGYYNQSEAGSHTLQ :::::::::::::::::::::::::::::.::::::.:::::::::::::::: :::::: NP_001 DSDAASPRGEPRAPWVEQEGPEYWDRETQNYKRQAQADRVSLRNLRGYYNQSEDGSHTLQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 WMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAARAAEQQ ::::::::::::::::::::::::::::::::::::::::::::::::: :::::::: NP_001 RMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 RAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHLVSDHEATLRCWALGFYPAEITLT ::::::::::::::::::::::::::: :::::::: .:::::::::::::::::::::: NP_001 RAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRWEP ::::::::::::::::::::::::::::::::::::.:::::::.::::: ::::: ::: NP_001 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 SSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGGKGGSCSQAASSNSAQGSDES ::::::::.:::::::::.:::::::::...:::::::::::::::::: :::::::::: NP_001 SSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGGKGGSCSQAACSNSAQGSDES 310 320 330 340 350 360 pF1KE1 LIACKA ::.::: NP_001 LITCKA >>NP_002108 (OMIM: 142840,177900,609423) HLA class I his (366 aa) initn: 2322 init1: 2322 opt: 2322 Z-score: 2477.0 bits: 466.9 E(85289): 3.1e-131 Smith-Waterman score: 2322; 93.2% identity (97.0% similar) in 366 aa overlap (1-366:1-366) 10 20 30 40 50 60 pF1KE1 MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPRFIAVGYVDDTQFVRF :::::::.:.:::::.:::::::::::::::: ::::::::::::::.:::::::::::: NP_002 MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRNLRGYYNQSEAGSHTLQ ::::::::::::::::::::::::::::::::::::.:::::::::::::::: :::::: NP_002 DSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQADRVSLRNLRGYYNQSEDGSHTLQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 WMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAARAAEQQ : ::::::::::::::::::::::::::::::::::::::::::::::: :::::::: NP_002 RMSGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 RAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHLVSDHEATLRCWALGFYPAEITLT ::::::::::::::::::::::::::: :::::::: .:::::::::::::::::::::: NP_002 RAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRWEP ::::::::::::::::::::::::::::::::::::.:::::::.::::: ::::: ::: NP_002 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 SSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGGKGGSCSQAASSNSAQGSDES ::::::::.:::::::::.:::::::::...:::::::::::::::::: :::::::::: NP_002 SSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGGKGGSCSQAACSNSAQGSDES 310 320 330 340 350 360 pF1KE1 LIACKA ::.::: NP_002 LITCKA >>NP_005505 (OMIM: 106300,142830,608579) major histocomp (362 aa) initn: 2249 init1: 2008 opt: 2191 Z-score: 2337.6 bits: 441.1 E(85289): 1.8e-123 Smith-Waterman score: 2191; 89.0% identity (94.5% similar) in 363 aa overlap (1-363:1-362) 10 20 30 40 50 60 pF1KE1 MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPRFIAVGYVDDTQFVRF : ::::::..::::.::::::::: :::::::::.::::::::::::.:::::::::::: NP_005 MLVMAPRTVLLLLSAALALTETWAGSHSMRYFYTSVSRPGRGEPRFISVGYVDDTQFVRF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRNLRGYYNQSEAGSHTLQ :::::::: ::::::.::::::::::.:: :: :::::: :::::::::::::::::::: NP_005 DSDAASPREEPRAPWIEQEGPEYWDRNTQIYKAQAQTDRESLRNLRGYYNQSEAGSHTLQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 WMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAARAAEQQ :::::.:::::::::.:: ::::::::::::::::::::::::::::::::::: :::. NP_005 SMYGCDVGPDGRLLRGHDQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 RAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHLVSDHEATLRCWALGFYPAEITLT :::::: :::::::::::::. :.::. :::::::: .:::::::::::::::::::::: NP_005 RAYLEGECVEWLRRYLENGKDKLERADPPKTHVTHHPISDHEATLRCWALGFYPAEITLT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRWEP :::::::::::::::::::::: ::::::::::::::::::::::::::::.:::::::: NP_005 WQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 SSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGGKGGSCSQAASSNSAQGSDES ::: :.::::::::::::::. :.:::::.:::::::::::::: :::: :.:::::: : NP_005 SSQSTVPIVGIVAGLAVLAVV-VIGAVVAAVMCRRKSSGGKGGSYSQAACSDSAQGSDVS 310 320 330 340 350 pF1KE1 LIACKA : : NP_005 LTA 360 >>NP_002107 (OMIM: 142800,608579) HLA class I histocompa (365 aa) initn: 1953 init1: 1927 opt: 2096 Z-score: 2236.5 bits: 422.4 E(85289): 7.8e-118 Smith-Waterman score: 2096; 84.4% identity (93.4% similar) in 365 aa overlap (1-365:1-364) 10 20 30 40 50 60 pF1KE1 MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPRFIAVGYVDDTQFVRF : :::::::.::::::::::.::: :::::::.:.::::::::::::::::::::::::: NP_002 MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRNLRGYYNQSEAGSHTLQ :::::: : ::::::.:::::::::.::.. : :.:::::.: .::::::::::::::.: NP_002 DSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 WMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAARAAEQQ :::::.: :::.:::: :.::::::::::::::::::::: :::::.::::::. ::: NP_002 IMYGCDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 RAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHLVSDHEATLRCWALGFYPAEITLT ::::.::::::::::::::::::::.. ::::.::: .:::::::::::::::::::::: NP_002 RAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRWEP :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::: NP_002 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 SSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGGKGGSCSQAASSNSAQGSDES :::::::::::.:::..:... . :::::.:: ::::: :::: .:::::.:::::: : NP_002 SSQPTIPIVGIIAGLVLLGAV-ITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVS 310 320 330 340 350 pF1KE1 LIACKA : ::: NP_002 LTACKV 360 >>NP_001229687 (OMIM: 142800,608579) HLA class I histoco (365 aa) initn: 1948 init1: 1893 opt: 2062 Z-score: 2200.3 bits: 415.7 E(85289): 8e-116 Smith-Waterman score: 2062; 82.7% identity (93.7% similar) in 365 aa overlap (1-365:1-364) 10 20 30 40 50 60 pF1KE1 MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPRFIAVGYVDDTQFVRF : :::::::.::::::::::.::: :::::::.:.::::::::::::::::::::::::: NP_001 MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRNLRGYYNQSEAGSHTLQ :::::: . ::::::.:::::::::.::...: ..::::..: .::::::::: ::::.: NP_001 DSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 WMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAARAAEQQ :::::.:::::.:::: :.::::::::::::::::::::: :::::.:::::..::::. NP_001 IMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 RAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHLVSDHEATLRCWALGFYPAEITLT :.:::: ::. ::::::::::::::.. ::::.::: .:::::::::::::::::::::: NP_001 RVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRWEP :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::: NP_001 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 SSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGGKGGSCSQAASSNSAQGSDES :::::::::::.:::..:... . :::::.:: ::::: :::: .:::::.:::::: : NP_001 SSQPTIPIVGIIAGLVLLGAV-ITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVS 310 320 330 340 350 pF1KE1 LIACKA : ::: NP_001 LTACKV 360 >>XP_016885777 (OMIM: 142800,608579) PREDICTED: HLA clas (362 aa) initn: 1910 init1: 1884 opt: 2051 Z-score: 2188.7 bits: 413.6 E(85289): 3.6e-115 Smith-Waterman score: 2051; 83.4% identity (92.8% similar) in 362 aa overlap (4-365:1-361) 10 20 30 40 50 60 pF1KE1 MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPRFIAVGYVDDTQFVRF ::::::.::::::::::.::: :::::::.:.::::::::::::::::::::::::: XP_016 MAPRTLVLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 DSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRNLRGYYNQSEAGSHTLQ :::::: : ::::::.::::::::: ::.: : ..:: ::.: .::::::::::::::.: XP_016 DSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQ 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 WMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAARAAEQQ :::::.: : :.:::: : ::::::::::.:::::::::: ::: :..:::::..::: XP_016 RMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQL 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE1 RAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHLVSDHEATLRCWALGFYPAEITLT :::::::::::::::::::::::::.. ::::.::: :::::::::::::.::::::::: XP_016 RAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLT 180 190 200 210 220 230 250 260 270 280 290 300 pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRWEP ::::::::::::::::::::::::::::::::::::.::::::::::::::.:::::::: XP_016 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP 240 250 260 270 280 290 310 320 330 340 350 360 pF1KE1 SSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGGKGGSCSQAASSNSAQGSDES :::::::::::.:::...... . :::::.:: ::::: :::: ::::::.:::::: : XP_016 SSQPTIPIVGIIAGLVLFGAV-ITGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQGSDVS 300 310 320 330 340 350 pF1KE1 LIACKA : ::: XP_016 LTACKV 360 >>XP_005275388 (OMIM: 142800,608579) PREDICTED: HLA clas (391 aa) initn: 1910 init1: 1884 opt: 2051 Z-score: 2188.3 bits: 413.6 E(85289): 3.8e-115 Smith-Waterman score: 2051; 83.4% identity (92.8% similar) in 362 aa overlap (4-365:1-361) 10 20 30 40 50 60 pF1KE1 MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPRFIAVGYVDDTQFVRF ::::::.::::::::::.::: :::::::.:.::::::::::::::::::::::::: XP_005 MAPRTLVLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 DSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRNLRGYYNQSEAGSHTLQ :::::: : ::::::.::::::::: ::.: : ..:: ::.: .::::::::::::::.: XP_005 DSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQ 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 WMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAARAAEQQ :::::.: : :.:::: : ::::::::::.:::::::::: ::: :..:::::..::: XP_005 RMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQL 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE1 RAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHLVSDHEATLRCWALGFYPAEITLT :::::::::::::::::::::::::.. ::::.::: :::::::::::::.::::::::: XP_005 RAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLT 180 190 200 210 220 230 250 260 270 280 290 300 pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRWEP ::::::::::::::::::::::::::::::::::::.::::::::::::::.:::::::: XP_005 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP 240 250 260 270 280 290 310 320 330 340 350 360 pF1KE1 SSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGGKGGSCSQAASSNSAQGSDES :::::::::::.:::...... . :::::.:: ::::: :::: ::::::.:::::: : XP_005 SSQPTIPIVGIIAGLVLFGAV-ITGAVVAAVMWRRKSSDRKGGSYSQAASSDSAQGSDVS 300 310 320 330 340 350 pF1KE1 LIACKA : ::: XP_005 LTACKGESLEGLMCVGCWAEQWTQLCYGVSFHWMY 360 370 380 390 >>NP_002118 (OMIM: 142871,600807) HLA class I histocompa (338 aa) initn: 1926 init1: 1877 opt: 1908 Z-score: 2036.9 bits: 385.4 E(85289): 1e-106 Smith-Waterman score: 1908; 83.1% identity (93.2% similar) in 338 aa overlap (1-338:1-337) 10 20 30 40 50 60 pF1KE1 MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPRFIAVGYVDDTQFVRF : :::::::.:::::::.:::::: ::::::: .::::::::::::::.::::::::::: NP_002 MVVMAPRTLFLLLSGALTLTETWAGSHSMRYFSAAVSRPGRGEPRFIAMGYVDDTQFVRF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRNLRGYYNQSEAGSHTLQ :::.: :: :::::::::::::::..::.. : .:::::..:..::::::::::.::::: NP_002 DSDSACPRMEPRAPWVEQEGPEYWEEETRNTKAHAQTDRMNLQTLRGYYNQSEASSHTLQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 WMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAARAAEQQ :: ::::: ::::::::.: :::::::.::::::::::::::::::..:: ::: .:::. NP_002 WMIGCDLGSDGRLLRGYEQYAYDGKDYLALNEDLRSWTAADTAAQISKRKCEAANVAEQR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 RAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHLVSDHEATLRCWALGFYPAEITLT ::::::::::::.:::::::: ::::. :::::::: : :.:::::::::::::::: :: NP_002 RAYLEGTCVEWLHRYLENGKEMLQRADPPKTHVTHHPVFDYEATLRCWALGFYPAEIILT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRWEP :::::::::::.:::::::::::::::::::::::::::::::::::::::::: :::. NP_002 WQRDGEDQTQDVELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLMLRWKQ 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 SSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGGKGGSCSQAASSNSAQGSDES :: :::::.::::::.:::.. : ::.::.:. :.::: NP_002 SSLPTIPIMGIVAGLVVLAAV-VTGAAVAAVLWRKKSSD 310 320 330 pF1KE1 LIACKA >>XP_016866305 (OMIM: 142871,600807) PREDICTED: HLA clas (343 aa) initn: 1926 init1: 1877 opt: 1908 Z-score: 2036.8 bits: 385.4 E(85289): 1e-106 Smith-Waterman score: 1908; 83.1% identity (93.2% similar) in 338 aa overlap (1-338:6-342) 10 20 30 40 50 pF1KE1 MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPRFIAVGYVDDT : :::::::.:::::::.:::::: ::::::: .::::::::::::::.:::::: XP_016 MKTPRMVVMAPRTLFLLLSGALTLTETWAGSHSMRYFSAAVSRPGRGEPRFIAMGYVDDT 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 QFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRNLRGYYNQSEAG ::::::::.: :: :::::::::::::::..::.. : .:::::..:..::::::::::. XP_016 QFVRFDSDSACPRMEPRAPWVEQEGPEYWEEETRNTKAHAQTDRMNLQTLRGYYNQSEAS 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 SHTLQWMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAR ::::::: ::::: ::::::::.: :::::::.::::::::::::::::::..:: ::: XP_016 SHTLQWMIGCDLGSDGRLLRGYEQYAYDGKDYLALNEDLRSWTAADTAAQISKRKCEAAN 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE1 AAEQQRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHLVSDHEATLRCWALGFYPA .:::.::::::::::::.:::::::: ::::. :::::::: : :.:::::::::::::: XP_016 VAEQRRAYLEGTCVEWLHRYLENGKEMLQRADPPKTHVTHHPVFDYEATLRCWALGFYPA 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE1 EITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLT :: :::::::::::::.:::::::::::::::::::::::::::::::::::::::::: XP_016 EIILTWQRDGEDQTQDVELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLM 250 260 270 280 290 300 300 310 320 330 340 350 pF1KE1 LRWEPSSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGGKGGSCSQAASSNSAQ :::. :: :::::.::::::.:::.. : ::.::.:. :.::: XP_016 LRWKQSSLPTIPIMGIVAGLVVLAAV-VTGAAVAAVLWRKKSSD 310 320 330 340 360 pF1KE1 GSDESLIACKA >>NP_005507 (OMIM: 143010) HLA class I histocompatibilit (358 aa) initn: 1799 init1: 1799 opt: 1895 Z-score: 2022.8 bits: 382.9 E(85289): 6.3e-106 Smith-Waterman score: 1895; 78.0% identity (91.5% similar) in 355 aa overlap (4-358:1-354) 10 20 30 40 50 60 pF1KE1 MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPRFIAVGYVDDTQFVRF :. ::.:::: :::::.::: :::..::.:.::::::::::::.:::::::::::: NP_005 MVDGTLLLLLSEALALTQTWAGSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRF 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 DSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRNLRGYYNQSEAGSHTLQ :.:::::: :::::.:::: :::::::.. . :: ::.::.:::::::::::::::: NP_005 DNDAASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQ 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 WMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAARAAEQQ ::.::.::::::.::::.: :::::::..::::::::::.::::::...: . : ::.: NP_005 WMHGCELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQ 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE1 RAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHLVSDHEATLRCWALGFYPAEITLT ::::: ::::::..:::.::::: . : :::::::: .:::::::::::::::::::::: NP_005 RAYLEDTCVEWLHKYLEKGKETLLHLEPPKTHVTHHPISDHEATLRCWALGFYPAEITLT 180 190 200 210 220 230 250 260 270 280 290 300 pF1KE1 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRWEP ::.::: .:::::::::::::::::::::::::::::::::::::::::::::.::::.: NP_005 WQQDGEGHTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKP 240 250 260 270 280 290 310 320 330 340 350 360 pF1KE1 SSQPTIPIVGIVAGLAVLAVLAVLGAVVAVVMCRRKSSGGKGGSCSQAASSNSAQGSDES .::::::::::.:::..:. . : :::::.:. :.::::::::: :.: :.:::::. NP_005 ASQPTIPIVGIIAGLVLLGSV-VSGAVVAAVIWRKKSSGGKGGSYSKAEWSDSAQGSESH 300 310 320 330 340 350 pF1KE1 LIACKA NP_005 SL 366 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:44:02 2016 done: Mon Nov 7 02:44:04 2016 Total Scan time: 8.850 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]