FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6337, 385 aa 1>>>pF1KE6337 385 - 385 aa - 385 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5753+/-0.000987; mu= 15.3147+/- 0.059 mean_var=65.3076+/-12.899, 0's: 0 Z-trim(103.6): 18 B-trim: 16 in 1/48 Lambda= 0.158706 statistics sampled from 7476 (7487) to 7476 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.601), E-opt: 0.2 (0.23), width: 16 Scan time: 2.140 The best scores are: opt bits E(32554) CCDS13032.1 IDH3B gene_id:3420|Hs108|chr20 ( 385) 2494 580.1 1.2e-165 CCDS82594.1 IDH3B gene_id:3420|Hs108|chr20 ( 387) 2494 580.1 1.2e-165 CCDS13031.1 IDH3B gene_id:3420|Hs108|chr20 ( 383) 2403 559.2 2.2e-159 CCDS74696.1 IDH3B gene_id:3420|Hs108|chr20 ( 376) 2319 540.0 1.3e-153 CCDS14730.1 IDH3G gene_id:3421|Hs108|chrX ( 393) 1169 276.7 2.5e-74 CCDS44019.1 IDH3G gene_id:3421|Hs108|chrX ( 380) 1115 264.3 1.3e-70 CCDS10297.1 IDH3A gene_id:3419|Hs108|chr15 ( 366) 941 224.5 1.2e-58 >>CCDS13032.1 IDH3B gene_id:3420|Hs108|chr20 (385 aa) initn: 2494 init1: 2494 opt: 2494 Z-score: 3087.6 bits: 580.1 E(32554): 1.2e-165 Smith-Waterman score: 2494; 100.0% identity (100.0% similar) in 385 aa overlap (1-385:1-385) 10 20 30 40 50 60 pF1KE6 MAALSGVRWLTRALVSAGNPGAWRGLSTSAAAHAASRSQAEDVRVEGSFPVTMLPGDGVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MAALSGVRWLTRALVSAGNPGAWRGLSTSAAAHAASRSQAEDVRVEGSFPVTMLPGDGVG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 PELMHAVKEVFKAAAVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 PELMHAVKEVFKAAAVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 YKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 YKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESAR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 GVIECLKIVTRAKSQRIAKFAFDYATKKGRGKVTAVHKANIMKLGDGLFLQCCEEVAELY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 GVIECLKIVTRAKSQRIAKFAFDYATKKGRGKVTAVHKANIMKLGDGLFLQCCEEVAELY 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 PKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 PKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEY 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 AVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSSMIADAVKKVIKVGKVRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 AVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSSMIADAVKKVIKVGKVRT 310 320 330 340 350 360 370 380 pF1KE6 RDMGGYSTTTDFIKSVIGHLQTKGS ::::::::::::::::::::::::: CCDS13 RDMGGYSTTTDFIKSVIGHLQTKGS 370 380 >>CCDS82594.1 IDH3B gene_id:3420|Hs108|chr20 (387 aa) initn: 2494 init1: 2494 opt: 2494 Z-score: 3087.5 bits: 580.1 E(32554): 1.2e-165 Smith-Waterman score: 2494; 100.0% identity (100.0% similar) in 385 aa overlap (1-385:1-385) 10 20 30 40 50 60 pF1KE6 MAALSGVRWLTRALVSAGNPGAWRGLSTSAAAHAASRSQAEDVRVEGSFPVTMLPGDGVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 MAALSGVRWLTRALVSAGNPGAWRGLSTSAAAHAASRSQAEDVRVEGSFPVTMLPGDGVG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 PELMHAVKEVFKAAAVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 PELMHAVKEVFKAAAVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 YKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 YKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESAR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 GVIECLKIVTRAKSQRIAKFAFDYATKKGRGKVTAVHKANIMKLGDGLFLQCCEEVAELY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 GVIECLKIVTRAKSQRIAKFAFDYATKKGRGKVTAVHKANIMKLGDGLFLQCCEEVAELY 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 PKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 PKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEY 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 AVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSSMIADAVKKVIKVGKVRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 AVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSSMIADAVKKVIKVGKVRT 310 320 330 340 350 360 370 380 pF1KE6 RDMGGYSTTTDFIKSVIGHLQTKGS ::::::::::::::::::::::::: CCDS82 RDMGGYSTTTDFIKSVIGHLQTKGSNL 370 380 >>CCDS13031.1 IDH3B gene_id:3420|Hs108|chr20 (383 aa) initn: 2427 init1: 2403 opt: 2403 Z-score: 2975.0 bits: 559.2 E(32554): 2.2e-159 Smith-Waterman score: 2403; 97.6% identity (98.7% similar) in 380 aa overlap (1-380:1-380) 10 20 30 40 50 60 pF1KE6 MAALSGVRWLTRALVSAGNPGAWRGLSTSAAAHAASRSQAEDVRVEGSFPVTMLPGDGVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MAALSGVRWLTRALVSAGNPGAWRGLSTSAAAHAASRSQAEDVRVEGSFPVTMLPGDGVG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 PELMHAVKEVFKAAAVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 PELMHAVKEVFKAAAVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 YKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 YKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESAR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 GVIECLKIVTRAKSQRIAKFAFDYATKKGRGKVTAVHKANIMKLGDGLFLQCCEEVAELY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 GVIECLKIVTRAKSQRIAKFAFDYATKKGRGKVTAVHKANIMKLGDGLFLQCCEEVAELY 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 PKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 PKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEY 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 AVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSSMIADAVKKVIKVGKVRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 AVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSSMIADAVKKVIKVGKVRT 310 320 330 340 350 360 370 380 pF1KE6 RDMGGYSTTTDFIKSVIGHLQTKGS :::::.: :: ..::. : CCDS13 SDMGGYATCHDFTEAVIAALPHP 370 380 >>CCDS74696.1 IDH3B gene_id:3420|Hs108|chr20 (376 aa) initn: 2319 init1: 2319 opt: 2319 Z-score: 2871.2 bits: 540.0 E(32554): 1.3e-153 Smith-Waterman score: 2319; 99.7% identity (100.0% similar) in 358 aa overlap (1-358:1-358) 10 20 30 40 50 60 pF1KE6 MAALSGVRWLTRALVSAGNPGAWRGLSTSAAAHAASRSQAEDVRVEGSFPVTMLPGDGVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 MAALSGVRWLTRALVSAGNPGAWRGLSTSAAAHAASRSQAEDVRVEGSFPVTMLPGDGVG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 PELMHAVKEVFKAAAVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 PELMHAVKEVFKAAAVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 YKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 YKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESAR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 GVIECLKIVTRAKSQRIAKFAFDYATKKGRGKVTAVHKANIMKLGDGLFLQCCEEVAELY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 GVIECLKIVTRAKSQRIAKFAFDYATKKGRGKVTAVHKANIMKLGDGLFLQCCEEVAELY 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 PKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 PKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEY 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 AVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSSMIADAVKKVIKVGKVRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::. CCDS74 AVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSSMIADAVKKVIKVGKIPS 310 320 330 340 350 360 370 380 pF1KE6 RDMGGYSTTTDFIKSVIGHLQTKGS CCDS74 AVPSFLLHPLPFSWAI 370 >>CCDS14730.1 IDH3G gene_id:3421|Hs108|chrX (393 aa) initn: 1190 init1: 1010 opt: 1169 Z-score: 1447.8 bits: 276.7 E(32554): 2.5e-74 Smith-Waterman score: 1169; 54.6% identity (78.5% similar) in 335 aa overlap (47-381:53-384) 20 30 40 50 60 70 pF1KE6 AGNPGAWRGLSTSAAAHAASRSQAEDVRVEGSFPVTMLPGDGVGPELMHAVKEVFKAAAV : :::.::::.::::: :: ::. : : CCDS14 CRPWEVLGAHEVPSRNIFSEQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFRHACV 30 40 50 60 70 80 80 90 100 110 120 130 pF1KE6 PVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPMEYKGELASYDMRLRRKL ::.:.: :.: . :.:: ..... ....:.::. :.:.: . : . :: .: CCDS14 PVDFEEVHVS---SNADEEDIRNAIMAIRRNRVALKGNIETNHNLPPSHKSRNNILRTSL 90 100 110 120 130 140 150 160 170 180 190 pF1KE6 DLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESARGVIECLKIVTRAKSQR ::.:::.: ::::: .:::...:..:.::.::::::::::::. ::.: :::.:.::: : CCDS14 DLYANVIHCKSLPGVVTRHKDIDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSLR 140 150 160 170 180 190 200 210 220 230 240 250 pF1KE6 IAKFAFDYATKKGRGKVTAVHKANIMKLGDGLFLQCCEEVAELYPKIKFETMIIDNCCMQ ::..:: : ..:: ::::::::::::::::::::::.::: ::.: ::.::.:: :: CCDS14 IAEYAFKLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVAARYPQITFENMIVDNTTMQ 200 210 220 230 240 250 260 270 280 290 300 310 pF1KE6 LVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEYAVFETGARHPFAQAVG ::. : ::::.:::::::::..:. :::::: :.: : .:. ::::::..:. . .. CCDS14 LVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYGHVYAVFETATRNTGKSIAN 260 270 280 290 300 310 320 330 340 350 360 370 pF1KE6 RNIANPTAMLLSASNMLRHLNLEYHSSMIADAVKKVIKVGKVRTRDMGGYSTTTDFIKSV .::::::: ::.. :: ::.:. ... : :: . ...: :.:: .::.. :..: CCDS14 KNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNENMHTPDIGGQGTTSEAIQDV 320 330 340 350 360 370 380 pF1KE6 IGHLQTKGS : :.. CCDS14 IRHIRVINGRAVEA 380 390 >>CCDS44019.1 IDH3G gene_id:3421|Hs108|chrX (380 aa) initn: 993 init1: 965 opt: 1115 Z-score: 1381.3 bits: 264.3 E(32554): 1.3e-70 Smith-Waterman score: 1115; 55.9% identity (78.3% similar) in 313 aa overlap (47-359:53-362) 20 30 40 50 60 70 pF1KE6 AGNPGAWRGLSTSAAAHAASRSQAEDVRVEGSFPVTMLPGDGVGPELMHAVKEVFKAAAV : :::.::::.::::: :: ::. : : CCDS44 CRPWEVLGAHEVPSRNIFSEQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFRHACV 30 40 50 60 70 80 80 90 100 110 120 130 pF1KE6 PVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPMEYKGELASYDMRLRRKL ::.:.: :.: . :.:: ..... ....:.::. :.:.: . : . :: .: CCDS44 PVDFEEVHVS---SNADEEDIRNAIMAIRRNRVALKGNIETNHNLPPSHKSRNNILRTSL 90 100 110 120 130 140 150 160 170 180 190 pF1KE6 DLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESARGVIECLKIVTRAKSQR ::.:::.: ::::: .:::...:..:.::.::::::::::::. ::.: :::.:.::: : CCDS44 DLYANVIHCKSLPGVVTRHKDIDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSLR 140 150 160 170 180 190 200 210 220 230 240 250 pF1KE6 IAKFAFDYATKKGRGKVTAVHKANIMKLGDGLFLQCCEEVAELYPKIKFETMIIDNCCMQ ::..:: : ..:: ::::::::::::::::::::::.::: ::.: ::.::.:: :: CCDS44 IAEYAFKLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVAARYPQITFENMIVDNTTMQ 200 210 220 230 240 250 260 270 280 290 300 310 pF1KE6 LVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEYAVFETGARHPFAQAVG ::. : ::::.:::::::::..:. :::::: :.: : .:. ::::::..:. . .. CCDS44 LVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYGHVYAVFETATRNTGKSIAN 260 270 280 290 300 310 320 330 340 350 360 370 pF1KE6 RNIANPTAMLLSASNMLRHLNLEYHSSMIADAVKKVIKVGKVRTRDMGGYSTTTDFIKSV .::::::: ::.. :: ::.:. ... : :: . .:: CCDS44 KNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNENVRFPSHPTLLPRPVSPCSL 320 330 340 350 360 370 380 pF1KE6 IGHLQTKGS CCDS44 L 380 >>CCDS10297.1 IDH3A gene_id:3419|Hs108|chr15 (366 aa) initn: 935 init1: 768 opt: 941 Z-score: 1166.2 bits: 224.5 E(32554): 1.2e-58 Smith-Waterman score: 941; 45.0% identity (75.4% similar) in 333 aa overlap (47-376:30-358) 20 30 40 50 60 70 pF1KE6 AGNPGAWRGLSTSAAAHAASRSQAEDVRVEGSFPVTMLPGDGVGPELMHAVKEVFKAAAV : ::..::::.:::. :: ..: :: . CCDS10 MAGPAWISKVSRLLGAFHNPKQVTRGFTGGVQTVTLIPGDGIGPEISAAVMKIFDAAKA 10 20 30 40 50 80 90 100 110 120 130 pF1KE6 PVEFQEHHLSEVQNMASEEKLE-QVLSSMKENKVAIIGKIHTPMEYKGELASYDMRLRRK :....:.... .:. ... . .. :: .::... : ..::. :. :... ::. CCDS10 PIQWEERNVTAIQGPGGKWMIPSEAKESMDKNKMGLKGPLKTPIA-AGH-PSMNLLLRKT 60 70 80 90 100 110 140 150 160 170 180 190 pF1KE6 LDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESARGVIECLKIVTRAKSQ .::.::: :. :: : ......: :::.::::::..:: . ::.. .:..:.. :. CCDS10 FDLYANVRPCVSIEGYKTPYTDVNIVTIRENTEGEYSGIEHVIVDGVVQSIKLITEGASK 120 130 140 150 160 170 200 210 220 230 240 250 pF1KE6 RIAKFAFDYATKKGRGKVTAVHKANIMKLGDGLFLQCCEEVAELYPKIKFETMIIDNCCM :::.:::.:: .. :..::::::::::...:::::: :.:::: :::. : .:. :. CCDS10 RIAEFAFEYARNNHRSNVTAVHKANIMRMSDGLFLQKCREVAESCKDIKFNEMYLDTVCL 180 190 200 210 220 230 260 270 280 290 300 310 pF1KE6 QLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAE-YAVFETGARHPFAQA ..::.: ::::::::::::.:...: :::.:: ::.:. . .:. :.::. : : CCDS10 NMVQDPSQFDVLVMPNLYGDILSDLCAGLIGGLGVTPSGNIGANGVAIFES--VHGTAPD 240 250 260 270 280 290 320 330 340 350 360 370 pF1KE6 V-GRNIANPTAMLLSASNMLRHLNLEYHSSMIADAVKKVIKVGKVRTRDMGGYSTTTDFI . :...:::::.:::: ::::..: :.. : : .:: :: :.:.:: . .:: CCDS10 IAGKDMANPTALLLSAVMMLRHMGLFDHAARIEAACFATIKDGKSLTKDLGGNAKCSDFT 300 310 320 330 340 350 380 pF1KE6 KSVIGHLQTKGS . . CCDS10 EEICRRVKDLD 360 385 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 12:14:20 2016 done: Tue Nov 8 12:14:20 2016 Total Scan time: 2.140 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]