FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4346, 361 aa 1>>>pF1KE4346 361 - 361 aa - 361 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.8172+/-0.000997; mu= -0.6020+/- 0.061 mean_var=328.3945+/-68.179, 0's: 0 Z-trim(115.8): 3 B-trim: 467 in 1/52 Lambda= 0.070774 statistics sampled from 16346 (16349) to 16346 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.502), width: 16 Scan time: 3.360 The best scores are: opt bits E(32554) CCDS12646.1 TOMM40 gene_id:10452|Hs108|chr19 ( 361) 2439 262.0 5.7e-70 CCDS1227.1 TOMM40L gene_id:84134|Hs108|chr1 ( 308) 1319 147.6 1.4e-35 CCDS65700.1 TOMM40L gene_id:84134|Hs108|chr1 ( 274) 890 103.7 1.9e-22 >>CCDS12646.1 TOMM40 gene_id:10452|Hs108|chr19 (361 aa) initn: 2439 init1: 2439 opt: 2439 Z-score: 1369.7 bits: 262.0 E(32554): 5.7e-70 Smith-Waterman score: 2439; 100.0% identity (100.0% similar) in 361 aa overlap (1-361:1-361) 10 20 30 40 50 60 pF1KE4 MGNVLAASSPPAGPPPPPAPALVGLPPPPPSPPGFTLPPLGGSLGAGTSTSRSSERTPGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MGNVLAASSPPAGPPPPPAPALVGLPPPPPSPPGFTLPPLGGSLGAGTSTSRSSERTPGA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 ATASASGAAEDGACGCLPNPGTFEECHRKCKELFPIQMEGVKLTVNKGLSNHFQVNHTVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 ATASASGAAEDGACGCLPNPGTFEECHRKCKELFPIQMEGVKLTVNKGLSNHFQVNHTVA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 LSTIGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLRSKMAIQT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 LSTIGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLRSKMAIQT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 QQSKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVYHRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 QQSKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVYHRR 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 PGEEGTVMSLAGKYTLNNWLATVTLGQAGMHATYYHKASDQLQVGVEFEASTRMQDTSVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 PGEEGTVMSLAGKYTLNNWLATVTLGQAGMHATYYHKASDQLQVGVEFEASTRMQDTSVS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 FGYQLDLPKANLLFKGSVDSNWIVGATLEKKLPPLPLTLALGAFLNHRKNKFQCGFGLTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 FGYQLDLPKANLLFKGSVDSNWIVGATLEKKLPPLPLTLALGAFLNHRKNKFQCGFGLTI 310 320 330 340 350 360 pF1KE4 G : CCDS12 G >>CCDS1227.1 TOMM40L gene_id:84134|Hs108|chr1 (308 aa) initn: 1340 init1: 1319 opt: 1319 Z-score: 752.5 bits: 147.6 E(32554): 1.4e-35 Smith-Waterman score: 1319; 64.6% identity (89.5% similar) in 285 aa overlap (77-361:24-308) 50 60 70 80 90 100 pF1KE4 GTSTSRSSERTPGAATASASGAAEDGACGCLPNPGTFEECHRKCKELFPIQMEGVKLTVN :::::.:.: :: ::..:: :::::::.:: CCDS12 MGNTLGLAPMGTLPRRSPRREEPLPNPGSFDELHRLCKDVFPAQMEGVKLVVN 10 20 30 40 50 110 120 130 140 150 160 pF1KE4 KGLSNHFQVNHTVALSTIGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIH : ::.:::: ::. .:..: .::. ..:.: ::::::.::..:::::.::::::::. CCDS12 KVLSSHFQVAHTIHMSALGLPGYHLHAAYAGDWQLSPTEVFPTVVGDMDSSGSLNAQVLL 60 70 80 90 100 110 170 180 190 200 210 220 pF1KE4 QLGPGLRSKMAIQTQQSKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSIT :. ::.: ..::::.::..:: ::::::.:.::..::::::.. : :.:::.:::.: CCDS12 LLAERLRAKAVFQTQQAKFLTWQFDGEYRGDDYTATLTLGNPDLIGESVIMVAHFLQSLT 120 130 140 150 160 170 230 240 250 260 270 280 pF1KE4 PCLALGGELVYHRRPGEEGTVMSLAGKYTLNNWLATVTLGQAGMHATYYHKASDQLQVGV :.:::::::::::::::....:::::. .:.::...:..: ::.:::.:..:.:::: CCDS12 HRLVLGGELVYHRRPGEEGAILTLAGKYSAVHWVATLNVGSGGAHASYYHRANEQVQVGV 180 190 200 210 220 230 290 300 310 320 330 340 pF1KE4 EFEASTRMQDTSVSFGYQLDLPKANLLFKGSVDSNWIVGATLEKKLPPLPLTLALGAFLN ::::.::.:::. ::::.: ::.::..:.: ::::: :::.::::.::::.::::::::: CCDS12 EFEANTRLQDTTFSFGYHLTLPQANMVFRGLVDSNWCVGAVLEKKMPPLPVTLALGAFLN 240 250 260 270 280 290 350 360 pF1KE4 HRKNKFQCGFGLTIG : .:.:.:::..:.: CCDS12 HWRNRFHCGFSITVG 300 >>CCDS65700.1 TOMM40L gene_id:84134|Hs108|chr1 (274 aa) initn: 1200 init1: 888 opt: 890 Z-score: 516.4 bits: 103.7 E(32554): 1.9e-22 Smith-Waterman score: 1115; 57.5% identity (79.3% similar) in 285 aa overlap (77-361:24-274) 50 60 70 80 90 100 pF1KE4 GTSTSRSSERTPGAATASASGAAEDGACGCLPNPGTFEECHRKCKELFPIQMEGVKLTVN :::::.:.: :: ::..:: :::::::.:: CCDS65 MGNTLGLAPMGTLPRRSPRREEPLPNPGSFDELHRLCKDVFPAQMEGVKLVVN 10 20 30 40 50 110 120 130 140 150 160 pF1KE4 KGLSNHFQVNHTVALSTIGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIH : ::.:::: ::. .:..: .::. ..:.: :::::: CCDS65 KVLSSHFQVAHTIHMSALGLPGYHLHAAYAGDWQLSPTE--------------------- 60 70 80 90 170 180 190 200 210 220 pF1KE4 QLGPGLRSKMAIQTQQSKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSIT :::.::..:: ::::::.:.::..::::::.. : :.:::.:::.: CCDS65 -------------TQQAKFLTWQFDGEYRGDDYTATLTLGNPDLIGESVIMVAHFLQSLT 100 110 120 130 230 240 250 260 270 280 pF1KE4 PCLALGGELVYHRRPGEEGTVMSLAGKYTLNNWLATVTLGQAGMHATYYHKASDQLQVGV :.:::::::::::::::....:::::. .:.::...:..: ::.:::.:..:.:::: CCDS65 HRLVLGGELVYHRRPGEEGAILTLAGKYSAVHWVATLNVGSGGAHASYYHRANEQVQVGV 140 150 160 170 180 190 290 300 310 320 330 340 pF1KE4 EFEASTRMQDTSVSFGYQLDLPKANLLFKGSVDSNWIVGATLEKKLPPLPLTLALGAFLN ::::.::.:::. ::::.: ::.::..:.: ::::: :::.::::.::::.::::::::: CCDS65 EFEANTRLQDTTFSFGYHLTLPQANMVFRGLVDSNWCVGAVLEKKMPPLPVTLALGAFLN 200 210 220 230 240 250 350 360 pF1KE4 HRKNKFQCGFGLTIG : .:.:.:::..:.: CCDS65 HWRNRFHCGFSITVG 260 270 361 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 02:10:20 2016 done: Sun Nov 6 02:10:20 2016 Total Scan time: 3.360 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]