Restriction map for
pFN21AB6876
(Circular) (Six-base) MAPSORT of: pFN21AB6876.seq Check: 2901 from: 1 to: 5305
pFN21AB6876 5305 bp
With 182 enzymes: SgfI *
August 27, 2010 15:51 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3115 278
Size: 53 83 186 936 1579 2468
Fragments arranged by size:
2468 1579 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2648 1937
Size: 711 4594
Acc65I G'GTAC_C
Cuts at: 2097 2626 2097
Size: 529 4776
AclI AA'CG_TT
Cuts at: 1563 3432 3805 1563
Size: 1869 373 3063
Fragments arranged by size:
3063 1869 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2132 3368 4752 5020 1632
Size: 500 1236 1384 268 1917
Fragments arranged by size:
1917 1384 1236 500 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5108
AflIII A'CryG_T
Cuts at: 1203 4204 5181 1203
Size: 3001 977 1327
Fragments arranged by size:
3001 1327 977
AgeI A'CCGG_T
Cuts at: 4136 4136
Size: 5305
AhdI GACnn_n'nnGTC
Cuts at: 4034 4034
Size: 5305
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5305
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5305
AlwNI CAG_nnn'CTG
Cuts at: 2308 3048 4620 2308
Size: 740 1572 2993
Fragments arranged by size:
2993 1572 740
ApaI G_GGCC'C
Cuts at: 2029 2029
Size: 5305
ApaLI G'TGCA_C
Cuts at: 3362 4518 3362
Size: 1156 4149
ApoI r'AATT_y
Cuts at: 1493 2516 2547 2614 2840 2992 5101 1493
Size: 1023 31 67 226 152 2109 1697
Fragments arranged by size:
2109 1697 1023 226 152 67 31
AseI AT'TA_AT
Cuts at: 160 1032 3859 160
Size: 872 2827 1606
Fragments arranged by size:
2827 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5305
AvaI C'yCGr_G
Cuts at: 1870 1943 2408 2630 1870
Size: 73 465 222 4545
Fragments arranged by size:
4545 465 222 73
BamHI G'GATC_C
Cuts at: 2635 3002 2635
Size: 367 4938
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2097 2240 2626 4081 618
Size: 325 217 627 310 143 386 1455 1842
Fragments arranged by size:
1842 1455 627 386 325 310 217 143
BanII G_rGCy'C
Cuts at: 1391 2029 2624 1391
Size: 638 595 4072
Fragments arranged by size:
4072 638 595
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4334
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3496 3530 1903
Size: 34 1559 34 3678
Fragments arranged by size:
3678 1559 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3197 4407 3197
Size: 1210 4095
BclI T'GATC_A
Cuts at: 1548 2400 1548
Size: 852 4453
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3916 136
Size: 107 122 71 631 605 2244 1525
Fragments arranged by size:
2244 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 2466 5300 2466
Size: 2834 2471
BlpI GC'TnA_GC
Cuts at: 2722 2722
Size: 5305
Bme1580I G_kGCm'C
Cuts at: 1790 2029 3366 4522 1790
Size: 239 1337 1156 2573
Fragments arranged by size:
2573 1337 1156 239
BmgBI CAC'GTC
Cuts at: 1318 2335 2416 1318
Size: 1017 81 4207
Fragments arranged by size:
4207 1017 81
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3036 3994 442
Size: 416 53 83 399 24 1619 958 1753
Fragments arranged by size:
1753 1619 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5305
BplI GAGnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2107 2107
Size: 5305
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2066 2330 2393 3965 1239
Size: 827 264 63 1572 2579
Fragments arranged by size:
2579 1572 827 264 63
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3430 4295 4593 3430
Size: 865 298 4142
Fragments arranged by size:
4142 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3968 882
Size: 617 2469 2219
Fragments arranged by size:
2469 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3096 493
Size: 711 1892 2702
Fragments arranged by size:
2702 1892 711
BsaBI GATnn'nnATC
Cuts at: 5299 5299
Size: 5305
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3112 3494 4129 275
Size: 53 83 186 936 1579 382 635 1451
Fragments arranged by size:
1579 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3738 4136 4410 4557 4968 3738
Size: 398 274 147 411 4075
Fragments arranged by size:
4075 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2072 2102 1178
Size: 30 165 30 669 30 4381
Fragments arranged by size:
4381 669 165 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2063 2093 2096 1186
Size: 877 30 3 4395
Fragments arranged by size:
4395 877 30 3
BseYI C'CCAG_C
Cuts at: 2139 2202 4508 5004 2139
Size: 63 2306 496 2440
Fragments arranged by size:
2440 2306 496 63
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2258 1163
Size: 573 522 4210
Fragments arranged by size:
4210 573 522
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2131 2755 3516 4544 1540
Size: 275 186 130 624 761 1028 2301
Fragments arranged by size:
2301 1028 761 624 275 186 130
BsiHKAI G_wGCw'C
Cuts at: 2093 3366 3451 4522 2093
Size: 1273 85 1071 2876
Fragments arranged by size:
2876 1273 1071 85
BsmI GAATG_Cn'
Cuts at: 2816 2909 2816
Size: 93 5212
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2029 2093 2624 3366 3451 4522 1391
Size: 399 239 64 531 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 531 399 239 85 64
BspEI T'CCGG_A
Cuts at: 4968 4968
Size: 5305
BspHI T'CATG_A
Cuts at: 3194 4924 3194
Size: 1730 3575
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2660 844
Size: 1816 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3192 1394
Size: 429 1369 3507
Fragments arranged by size:
3507 1369 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3800 3974 65
Size: 1183 2552 174 1396
Fragments arranged by size:
2552 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 2126 3949 4136 1700
Size: 110 316 1823 187 2869
Fragments arranged by size:
2869 1823 316 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5305
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5305
BssSI C'ACGA_G
Cuts at: 3365 4377 3365
Size: 1012 4293
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5305
BstBI TT'CG_AA
Cuts at: 4109 4109
Size: 5305
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5305
BstYI r'GATC_y
Cuts at: 1972 2040 2466 2635 3002 3387 3404 4856 4942
Size: 68 426 169 367 385 17 1452 86
Cuts at: 4942 4954 5300 1972
Size: 12 346 1977
Fragments arranged by size:
1977 1452 426 385 367 346 169 86
68 17 12
BtgI C'CryG_G
Cuts at: 513 1065 2004 2286 513
Size: 552 939 282 3532
Fragments arranged by size:
3532 939 552 282
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 2251 487
Size: 683 56 1025 3541
Fragments arranged by size:
3541 1025 683 56
BtsI GCAGTG_nn'
Cuts at: 2821 3615 3635 2821
Size: 794 20 4491
Fragments arranged by size:
4491 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5305
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5270
DraI TTT'AAA
Cuts at: 2609 2609
Size: 5305
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4312 809
Size: 507 2996 1802
Fragments arranged by size:
2996 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2128 2535 2752
Size: 54 1425 50 275 18 298 407 217
Cuts at: 2752 3641 5270 8
Size: 889 1629 43
Fragments arranged by size:
1629 1425 889 407 298 275 217 54
50 43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2128 2752 1537
Size: 275 316 624 4090
Fragments arranged by size:
4090 624 316 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3235 1353
Size: 1882 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3892 4266 4412 387
Size: 1064 138 2303 374 146 1280
Fragments arranged by size:
2303 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2066 2132 2330 2393 3368 3965 4752
Size: 393 434 66 198 63 975 597 787
Cuts at: 4752 5020 1239
Size: 268 1524
Fragments arranged by size:
1524 975 787 597 434 393 268 198
66 63
EcoNI CCTnn'n_nnAGG
Cuts at: 2033 2033
Size: 5305
EcoO109I rG'GnC_Cy
Cuts at: 2025 2026 2025
Size: 1 5304
EcoRI G'AATT_C
Cuts at: 2516 2614 2992 2516
Size: 98 378 4829
Fragments arranged by size:
4829 378 98
FspI TGC'GCA
Cuts at: 3811 3811
Size: 5305
HaeII r_GCGC'y
Cuts at: 1678 4452 1678
Size: 2774 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 3946 3978 4020 4052 1373
Size: 32 135 32 2374 32 42 32 2626
Fragments arranged by size:
2626 2374 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2649 2895 669
Size: 988 281 711 246 3079
Fragments arranged by size:
3079 988 711 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5305
HpaI GTT'AAC
Cuts at: 2895 2895
Size: 5305
KpnI G_GTAC'C
Cuts at: 2101 2630 2101
Size: 529 4776
MfeI C'AATT_G
Cuts at: 2904 2904
Size: 5305
MluI A'CGCG_T
Cuts at: 5181 5181
Size: 5305
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2253 4419 4603 1305
Size: 948 2166 184 2007
Fragments arranged by size:
2166 2007 948 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2537 10
Size: 54 1425 343 705 2778
Fragments arranged by size:
2778 1425 705 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3263 3622 3781 518
Size: 648 2097 359 159 2042
Fragments arranged by size:
2097 2042 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2059 2288 2721 3398 4546 4791 1606
Size: 453 229 433 677 1148 245 2120
Fragments arranged by size:
2120 1148 677 453 433 245 229
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3814
Fragments arranged by size:
3814 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5305
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5305
NotI GC'GGCC_GC
Cuts at: 2752 2752
Size: 5305
NspI r_CATG'y
Cuts at: 1132 1229 2210 2663 4208 1132
Size: 97 981 453 1545 2229
Fragments arranged by size:
2229 1545 981 453 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5305
PciI A'CATG_T
Cuts at: 4204 4204
Size: 5305
PflMI CCAn_nnn'nTGG
Cuts at: 1108 2308 1108
Size: 1200 4105
PfoI T'CCnGG_A
Cuts at: 2043 2043
Size: 5305
PmeI GTTT'AAAC
Cuts at: 2609 2609
Size: 5305
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3374 3406 4887 4919 3374
Size: 32 1481 32 3760
Fragments arranged by size:
3760 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5305
PsiI TTA'TAA
Cuts at: 2875 2875
Size: 5305
PspOMI G'GGCC_C
Cuts at: 2025 2025
Size: 5305
PstI C_TGCA'G
Cuts at: 830 2058 2657 830
Size: 1228 599 3478
Fragments arranged by size:
3478 1228 599
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5305
PvuII CAG'CTG
Cuts at: 2059 2059
Size: 5305
SacII CC_GC'GG
Cuts at: 2289 2289
Size: 5305
SalI G'TCGA_C
Cuts at: 1936 2647 1936
Size: 711 4594
SbfI CC_TGCA'GG
Cuts at: 2657 2657
Size: 5305
ScaI AGT'ACT
Cuts at: 2477 3553 5265 2477
Size: 1076 1712 2517
Fragments arranged by size:
2517 1712 1076
SfcI C'TryA_G
Cuts at: 826 1045 2054 2653 3788 4469 4660 826
Size: 219 1009 599 1135 681 191 1471
Fragments arranged by size:
1471 1135 1009 681 599 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5305
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5305
SmaI CCC'GGG
Cuts at: 1872 2632 1872
Size: 760 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3409 4310 4572 820
Size: 197 926 1466 901 262 1553
Fragments arranged by size:
1553 1466 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3096 493
Size: 2603 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5305
SphI G_CATG'C
Cuts at: 1132 2663 1132
Size: 1531 3774
SspI AAT'ATT
Cuts at: 5 52 3229 5
Size: 47 3177 2081
Fragments arranged by size:
3177 2081 47
StuI AGG'CCT
Cuts at: 1517 2195 1517
Size: 678 4627
StyI C'CwwG_G
Cuts at: 513 1065 2004 2034 2190 2744 513
Size: 552 939 30 156 554 3074
Fragments arranged by size:
3074 939 554 552 156 30
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2153 3332 3349 3502 3687 4132 325
Size: 1255 573 1179 17 153 185 445 1498
Fragments arranged by size:
1498 1255 1179 573 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2475 3551 5263
Size: 274 80 33 51 1443 498 1076 1712
Cuts at: 5263 96
Size: 138
Fragments arranged by size:
1712 1443 1076 498 274 138 80 51
33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2072 2104 5265 5297 2072
Size: 32 3161 32 2080
Fragments arranged by size:
3161 2080 32 32
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5305
XbaI T'CTAG_A
Cuts at: 2641 2641
Size: 5305
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2041 2305 2041
Size: 264 5041
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5305
XmaI C'CCGG_G
Cuts at: 1870 2630 1870
Size: 760 4545
XmnI GAAnn'nnTTC
Cuts at: 2516 3434 2516
Size: 918 4387
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3113 276
Size: 53 83 186 936 1579 2468
Fragments arranged by size:
2468 1579 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI
AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI
BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BplI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI
BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I
BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII
BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI
ClaI CspCI DraI DrdI EaeI EagI EarI EciI
Eco57MI EcoNI EcoO109I EcoRI FspI HaeII Hin4I HincII
HindIII HpaI KpnI MfeI MluI MmeI MscI MslI
MspA1I NcoI NdeI NheI NotI NspI PasI PciI
PflMI PfoI PmeI PpiI PshAI PsiI PspOMI PstI
PvuI PvuII SacII SalI SbfI ScaI SfcI SgfI
SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI
StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI
XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI AscI AvrII BaeI BbeI BbvCI
BfrBI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII
EcoICRI EcoRV FalI FseI FspAI KasI NaeI NarI
NgoMIV NruI NsiI PacI PmlI PpuMI PspXI PsrI
RsrII SacI SanDI SapI SexAI SfiI SfoI SrfI
SwaI