FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1460, 333 aa 1>>>pF1KE1460 333 - 333 aa - 333 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.5074+/-0.000392; mu= 7.5715+/- 0.025 mean_var=167.4102+/-33.134, 0's: 0 Z-trim(117.3): 17 B-trim: 0 in 0/54 Lambda= 0.099125 statistics sampled from 29187 (29203) to 29187 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.342), width: 16 Scan time: 8.290 The best scores are: opt bits E(85289) NP_003899 (OMIM: 603908) eukaryotic translation in ( 333) 2199 326.3 5.7e-89 XP_016883607 (OMIM: 603908) PREDICTED: eukaryotic ( 328) 2165 321.4 1.6e-87 NP_001303292 (OMIM: 603908) eukaryotic translation ( 330) 2164 321.3 1.8e-87 NP_001303293 (OMIM: 603908) eukaryotic translation ( 314) 1500 226.3 6.7e-59 >>NP_003899 (OMIM: 603908) eukaryotic translation initia (333 aa) initn: 2199 init1: 2199 opt: 2199 Z-score: 1718.4 bits: 326.3 E(85289): 5.7e-89 Smith-Waterman score: 2199; 99.7% identity (100.0% similar) in 333 aa overlap (1-333:1-333) 10 20 30 40 50 60 pF1KE1 MSGDEMIFDPTMSKKKKKKKKPFMLDEEGDTQTEETQPSETKEVEPEPTEDKDLEADEED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MSGDEMIFDPTMSKKKKKKKKPFMLDEEGDTQTEETQPSETKEVEPEPTEDKDLEADEED 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 TRKKDASDDLDDLNFFNQKKKKKKTKKIFDIDEAEEGVKDLKIESDVQEPTEPEDDLDIM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 TRKKDASDDLDDLNFFNQKKKKKKTKKIFDIDEAEEGVKDLKIESDVQEPTEPEDDLDIM 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LGNKKKKKKNVKFPDEDEILEKDEALEDEDNKKDDGISFSNQTGPAWAGSERDYTYDELL ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: NP_003 LGNKKKKKKNVKFPDEDEILEKDEALEDEDNKKDDGISFSNQTGPAWAGSERDYTYEELL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL 250 260 270 280 290 300 310 320 330 pF1KE1 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN ::::::::::::::::::::::::::::::::: NP_003 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN 310 320 330 >>XP_016883607 (OMIM: 603908) PREDICTED: eukaryotic tran (328 aa) initn: 2165 init1: 2165 opt: 2165 Z-score: 1692.2 bits: 321.4 E(85289): 1.6e-87 Smith-Waterman score: 2165; 99.7% identity (100.0% similar) in 328 aa overlap (6-333:1-328) 10 20 30 40 50 60 pF1KE1 MSGDEMIFDPTMSKKKKKKKKPFMLDEEGDTQTEETQPSETKEVEPEPTEDKDLEADEED ::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MIFDPTMSKKKKKKKKPFMLDEEGDTQTEETQPSETKEVEPEPTEDKDLEADEED 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 TRKKDASDDLDDLNFFNQKKKKKKTKKIFDIDEAEEGVKDLKIESDVQEPTEPEDDLDIM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TRKKDASDDLDDLNFFNQKKKKKKTKKIFDIDEAEEGVKDLKIESDVQEPTEPEDDLDIM 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 LGNKKKKKKNVKFPDEDEILEKDEALEDEDNKKDDGISFSNQTGPAWAGSERDYTYDELL ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: XP_016 LGNKKKKKKNVKFPDEDEILEKDEALEDEDNKKDDGISFSNQTGPAWAGSERDYTYEELL 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE1 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL 180 190 200 210 220 230 250 260 270 280 290 300 pF1KE1 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL 240 250 260 270 280 290 310 320 330 pF1KE1 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN ::::::::::::::::::::::::::::::::: XP_016 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN 300 310 320 >>NP_001303292 (OMIM: 603908) eukaryotic translation ini (330 aa) initn: 1614 init1: 1614 opt: 2164 Z-score: 1691.4 bits: 321.3 E(85289): 1.8e-87 Smith-Waterman score: 2164; 98.8% identity (99.1% similar) in 333 aa overlap (1-333:1-330) 10 20 30 40 50 60 pF1KE1 MSGDEMIFDPTMSKKKKKKKKPFMLDEEGDTQTEETQPSETKEVEPEPTEDKDLEADEED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSGDEMIFDPTMSKKKKKKKKPFMLDEEGDTQTEETQPSETKEVEPEPTEDKDLEADEED 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 TRKKDASDDLDDLNFFNQKKKKKKTKKIFDIDEAEEGVKDLKIESDVQEPTEPEDDLDIM ::::::::::::::::::::::::::::::::::::::: :::::::::::::::::: NP_001 TRKKDASDDLDDLNFFNQKKKKKKTKKIFDIDEAEEGVK---IESDVQEPTEPEDDLDIM 70 80 90 100 110 130 140 150 160 170 180 pF1KE1 LGNKKKKKKNVKFPDEDEILEKDEALEDEDNKKDDGISFSNQTGPAWAGSERDYTYDELL ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: NP_001 LGNKKKKKKNVKFPDEDEILEKDEALEDEDNKKDDGISFSNQTGPAWAGSERDYTYEELL 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE1 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL 180 190 200 210 220 230 250 260 270 280 290 300 pF1KE1 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL 240 250 260 270 280 290 310 320 330 pF1KE1 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN ::::::::::::::::::::::::::::::::: NP_001 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN 300 310 320 330 >>NP_001303293 (OMIM: 603908) eukaryotic translation ini (314 aa) initn: 2063 init1: 1500 opt: 1500 Z-score: 1178.5 bits: 226.3 E(85289): 6.7e-59 Smith-Waterman score: 2029; 94.0% identity (94.3% similar) in 333 aa overlap (1-333:1-314) 10 20 30 40 50 60 pF1KE1 MSGDEMIFDPTMSKKKKKKKKPFMLDEEGDTQTEETQPSETKEVEPEPTEDKDLEADEED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSGDEMIFDPTMSKKKKKKKKPFMLDEEGDTQTEETQPSETKEVEPEPTEDKDLEADEED 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 TRKKDASDDLDDLNFFNQKKKKKKTKKIFDIDEAEEGVKDLKIESDVQEPTEPEDDLDIM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TRKKDASDDLDDLNFFNQKKKKKKTKKIFDIDEAEEGVKDLKIESDVQEPTEPEDDLDIM 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LGNKKKKKKNVKFPDEDEILEKDEALEDEDNKKDDGISFSNQTGPAWAGSERDYTYDELL ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: NP_001 LGNKKKKKKNVKFPDEDEILEKDEALEDEDNKKDDGISFSNQTGPAWAGSERDYTYEELL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFL :::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKL------------ 190 200 210 220 250 260 270 280 290 300 pF1KE1 LAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL ::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 -------GSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFL 230 240 250 260 270 280 310 320 330 pF1KE1 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN ::::::::::::::::::::::::::::::::: NP_001 QCETCHSRCSVASIKTGFQAVTGKRAQLRAKAN 290 300 310 333 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:58:51 2016 done: Mon Nov 7 02:58:52 2016 Total Scan time: 8.290 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]