FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5119, 154 aa 1>>>pF1KE5119 154 - 154 aa - 154 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3065+/-0.000331; mu= 11.2192+/- 0.020 mean_var=56.4459+/-11.199, 0's: 0 Z-trim(113.6): 21 B-trim: 0 in 0/51 Lambda= 0.170710 statistics sampled from 23081 (23090) to 23081 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.675), E-opt: 0.2 (0.271), width: 16 Scan time: 4.020 The best scores are: opt bits E(85289) NP_001137234 (OMIM: 600187) eukaryotic translation ( 154) 1017 258.4 3.4e-69 NP_001961 (OMIM: 600187) eukaryotic translation in ( 154) 1017 258.4 3.4e-69 NP_001137233 (OMIM: 600187) eukaryotic translation ( 154) 1017 258.4 3.4e-69 XP_005256566 (OMIM: 600187) PREDICTED: eukaryotic ( 154) 1017 258.4 3.4e-69 NP_001137232 (OMIM: 600187) eukaryotic translation ( 184) 1017 258.4 4e-69 NP_065123 (OMIM: 605782) eukaryotic translation in ( 153) 865 220.9 6.2e-58 >>NP_001137234 (OMIM: 600187) eukaryotic translation ini (154 aa) initn: 1017 init1: 1017 opt: 1017 Z-score: 1363.3 bits: 258.4 E(85289): 3.4e-69 Smith-Waterman score: 1017; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154) 10 20 30 40 50 60 pF1KE5 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG 70 80 90 100 110 120 130 140 150 pF1KE5 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK :::::::::::::::::::::::::::::::::: NP_001 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK 130 140 150 >>NP_001961 (OMIM: 600187) eukaryotic translation initia (154 aa) initn: 1017 init1: 1017 opt: 1017 Z-score: 1363.3 bits: 258.4 E(85289): 3.4e-69 Smith-Waterman score: 1017; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154) 10 20 30 40 50 60 pF1KE5 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG 70 80 90 100 110 120 130 140 150 pF1KE5 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK :::::::::::::::::::::::::::::::::: NP_001 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK 130 140 150 >>NP_001137233 (OMIM: 600187) eukaryotic translation ini (154 aa) initn: 1017 init1: 1017 opt: 1017 Z-score: 1363.3 bits: 258.4 E(85289): 3.4e-69 Smith-Waterman score: 1017; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154) 10 20 30 40 50 60 pF1KE5 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG 70 80 90 100 110 120 130 140 150 pF1KE5 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK :::::::::::::::::::::::::::::::::: NP_001 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK 130 140 150 >>XP_005256566 (OMIM: 600187) PREDICTED: eukaryotic tran (154 aa) initn: 1017 init1: 1017 opt: 1017 Z-score: 1363.3 bits: 258.4 E(85289): 3.4e-69 Smith-Waterman score: 1017; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154) 10 20 30 40 50 60 pF1KE5 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG 70 80 90 100 110 120 130 140 150 pF1KE5 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK :::::::::::::::::::::::::::::::::: XP_005 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK 130 140 150 >>NP_001137232 (OMIM: 600187) eukaryotic translation ini (184 aa) initn: 1017 init1: 1017 opt: 1017 Z-score: 1362.1 bits: 258.4 E(85289): 4e-69 Smith-Waterman score: 1017; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:31-184) 10 20 30 pF1KE5 MADDLDFETGDAGASATFPMQCSALRKNGF :::::::::::::::::::::::::::::: NP_001 MCGTGGTDSKTRRPPHRASFLKRLESKPLKMADDLDFETGDAGASATFPMQCSALRKNGF 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE5 VVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQ 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE5 LIGIQDGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LIGIQDGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 130 140 150 160 170 180 pF1KE5 AMAK :::: NP_001 AMAK >>NP_065123 (OMIM: 605782) eukaryotic translation initia (153 aa) initn: 865 init1: 865 opt: 865 Z-score: 1161.1 bits: 220.9 E(85289): 6.2e-58 Smith-Waterman score: 865; 84.0% identity (94.7% similar) in 150 aa overlap (1-150:1-150) 10 20 30 40 50 60 pF1KE5 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG :::..:: :::::::.:.:::::::::::::::::::::::::::::::::::::::::: NP_065 MADEIDFTTGDAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG ::::::::::::::::::::::::::::.::: ::::::::: ..:::::::.::::.:: NP_065 IDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICIQDGYLSLLTETGEVREDLKLPEGELG 70 80 90 100 110 120 130 140 150 pF1KE5 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK :::: ::. ::.. ..:. ::.:: ::::: NP_065 KEIEGKYNAGEDVQVSVMCAMSEEYAVAIKPCK 130 140 150 154 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 21:35:32 2016 done: Mon Nov 7 21:35:33 2016 Total Scan time: 4.020 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]